Wall clock time and date at job start Tue Mar 31 2020 14:23:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46503 * 109.46997 * 2 1 4 4 C 1.46501 * 119.99937 * 269.99804 * 3 2 1 5 5 C 1.50702 * 109.47174 * 270.00198 * 4 3 2 6 6 H 1.07998 * 119.99681 * 359.97438 * 5 4 3 7 7 C 1.37871 * 119.99552 * 179.97438 * 5 4 3 8 8 N 1.31515 * 119.99857 * 179.97438 * 7 5 4 9 9 Si 1.86803 * 120.00418 * 0.02562 * 7 5 4 10 10 H 1.48502 * 109.47087 * 89.99810 * 9 7 5 11 11 H 1.48505 * 109.47058 * 209.99740 * 9 7 5 12 12 H 1.48500 * 109.47053 * 329.99686 * 9 7 5 13 13 C 1.34776 * 119.99601 * 90.00178 * 3 2 1 14 14 O 1.21589 * 119.99330 * 179.97438 * 13 3 2 15 15 N 1.34770 * 120.00355 * 0.02562 * 13 3 2 16 16 C 1.40012 * 119.99757 * 185.69572 * 15 13 3 17 17 C 1.39217 * 120.49339 * 24.52438 * 16 15 13 18 18 C 1.38552 * 118.37250 * 180.24117 * 17 16 15 19 19 C 1.38240 * 119.25275 * 359.46071 * 18 17 16 20 20 N 1.31875 * 120.92865 * 0.29343 * 19 18 17 21 21 C 1.31882 * 121.78154 * 359.97438 * 20 19 18 22 22 Br 1.89109 * 119.67597 * 179.97438 * 21 20 19 23 23 H 1.08998 * 109.47684 * 60.00124 * 1 2 3 24 24 H 1.09002 * 109.47166 * 180.02562 * 1 2 3 25 25 H 1.09003 * 109.47176 * 299.99471 * 1 2 3 26 26 H 1.08998 * 109.47031 * 239.99803 * 2 1 3 27 27 H 1.09001 * 109.47441 * 120.00340 * 2 1 3 28 28 H 1.08997 * 109.46595 * 30.00148 * 4 3 2 29 29 H 1.08992 * 109.46777 * 150.00138 * 4 3 2 30 30 H 0.97001 * 120.00658 * 179.97438 * 8 7 5 31 31 H 0.97003 * 120.00434 * 5.69029 * 15 13 3 32 32 H 1.08000 * 120.81198 * 359.97438 * 17 16 15 33 33 H 1.07992 * 120.37157 * 179.73371 * 18 17 16 34 34 H 1.08003 * 119.53098 * 180.27502 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.2625 2.0718 -1.2687 5 6 3.6857 1.8350 -1.7038 6 1 4.3428 1.2309 -1.0957 7 6 4.1489 2.3896 -2.8780 8 7 5.3912 2.1834 -3.2574 9 14 3.0126 3.4351 -3.9292 10 1 3.1161 4.8554 -3.5082 11 1 3.4056 3.3119 -5.3561 12 1 1.6129 2.9691 -3.7593 13 6 2.2429 2.0165 1.1672 14 8 2.6486 3.1627 1.1672 15 7 2.0188 1.3810 2.3344 16 6 2.1370 2.0762 3.5439 17 6 1.9779 3.4587 3.5826 18 6 2.1091 4.1028 4.8023 19 6 2.3804 3.3570 5.9342 20 7 2.5205 2.0475 5.8657 21 6 2.4088 1.3958 4.7246 22 35 2.6219 -0.4830 4.6947 23 1 -0.3634 0.5138 -0.8899 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3634 0.5138 0.8900 26 1 1.8933 -0.5139 -0.8900 27 1 1.8933 -0.5139 0.8899 28 1 1.5816 1.6877 -2.0283 29 1 2.0955 3.1410 -1.1384 30 1 5.7171 2.5733 -4.0837 31 1 1.7756 0.4420 2.3365 32 1 1.7618 4.0161 2.6831 33 1 1.9964 5.1747 4.8686 34 1 2.4792 3.8539 6.8881 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000119844571.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:23:17 Heat of formation + Delta-G solvation = 24.511114 kcal Electronic energy + Delta-G solvation = -19926.482967 eV Core-core repulsion = 16713.477493 eV Total energy + Delta-G solvation = -3213.005474 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 327.032 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.88552 -39.37346 -35.91095 -35.01326 -32.75561 -32.73870 -31.06873 -30.49220 -29.40545 -27.51818 -24.10638 -23.26512 -23.15162 -22.09510 -19.60331 -18.35560 -17.15069 -16.96224 -16.74212 -16.17749 -15.18067 -15.08398 -14.39430 -14.15418 -13.94201 -13.85391 -13.54800 -13.07164 -12.70710 -12.43471 -12.25232 -12.03101 -11.57571 -11.16925 -11.11435 -11.07269 -10.78372 -10.58435 -10.56443 -10.23110 -9.96959 -9.63361 -9.55892 -9.27781 -8.64010 -8.30655 -7.83118 -6.13259 -4.12992 0.81043 1.18765 1.27889 2.78849 3.25093 3.30738 3.32951 3.38314 3.77179 4.08106 4.34428 4.44672 4.70234 4.95883 5.01273 5.10349 5.18823 5.27888 5.38011 5.50878 5.81394 5.83937 6.01442 6.09625 6.21546 6.26515 6.42837 6.69521 6.75534 7.07193 7.27931 7.53700 7.62846 8.21886 8.40705 8.86504 8.92431 9.45818 11.00070 Molecular weight = 327.03amu Principal moments of inertia in cm(-1) A = 0.018008 B = 0.004226 C = 0.003853 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1554.508699 B = 6624.663123 C = 7264.559807 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.103 3.897 3 N -0.596 5.596 4 C 0.231 3.769 5 C -0.533 4.533 6 H 0.075 0.925 7 C 0.074 3.926 8 N -0.895 5.895 9 Si 0.876 3.124 10 H -0.273 1.273 11 H -0.284 1.284 12 H -0.266 1.266 13 C 0.702 3.298 14 O -0.564 6.564 15 N -0.683 5.683 16 C 0.176 3.824 17 C -0.087 4.087 18 C -0.131 4.131 19 C 0.071 3.929 20 N -0.439 5.439 21 C 0.073 3.927 22 Br -0.014 7.014 23 H 0.063 0.937 24 H 0.065 0.935 25 H 0.051 0.949 26 H 0.093 0.907 27 H 0.061 0.939 28 H 0.034 0.966 29 H 0.039 0.961 30 H 0.265 0.735 31 H 0.408 0.592 32 H 0.170 0.830 33 H 0.144 0.856 34 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.145 -3.933 16.114 19.983 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C -0.021 4.021 3 N -0.329 5.329 4 C 0.110 3.890 5 C -0.571 4.571 6 H 0.093 0.907 7 C -0.129 4.129 8 N -0.534 5.534 9 Si 0.703 3.297 10 H -0.199 1.199 11 H -0.210 1.210 12 H -0.190 1.190 13 C 0.404 3.596 14 O -0.440 6.440 15 N -0.332 5.332 16 C 0.072 3.928 17 C -0.116 4.116 18 C -0.152 4.152 19 C -0.090 4.090 20 N -0.149 5.149 21 C -0.146 4.146 22 Br 0.070 6.930 23 H 0.082 0.918 24 H 0.084 0.916 25 H 0.070 0.930 26 H 0.112 0.888 27 H 0.079 0.921 28 H 0.052 0.948 29 H 0.057 0.943 30 H 0.075 0.925 31 H 0.248 0.752 32 H 0.187 0.813 33 H 0.162 0.838 34 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges -10.472 -4.286 16.515 20.019 hybrid contribution -0.626 0.837 -1.345 1.703 sum -11.097 -3.449 15.170 19.109 Atomic orbital electron populations 1.22257 0.96310 1.01953 1.02509 1.21475 0.93738 0.83725 1.03180 1.47301 1.66544 1.13577 1.05502 1.19659 0.97511 0.93208 0.78613 1.21328 0.95303 1.33230 1.07248 0.90703 1.24841 0.94991 0.95752 0.97301 1.69894 1.15118 1.44826 1.23514 0.86861 0.81382 0.81618 0.79859 1.19868 1.21024 1.19049 1.15841 0.78884 0.84905 0.79969 1.90858 1.51041 1.16717 1.85410 1.43150 1.72174 1.14484 1.03355 1.18224 0.96922 0.92631 0.85053 1.22058 0.97180 0.92236 1.00141 1.22226 0.98589 1.01853 0.92530 1.22637 0.98908 0.88387 0.99087 1.67292 1.11554 1.10500 1.25532 1.22337 1.08649 0.92882 0.90765 1.96726 1.96578 1.01179 1.98551 0.91785 0.91608 0.93004 0.88846 0.92087 0.94766 0.94304 0.92487 0.75235 0.81315 0.83808 0.81988 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.03 10.24 37.16 0.38 -1.65 16 2 C 0.10 1.52 5.94 -4.04 -0.02 1.50 16 3 N -0.60 -11.69 2.46 -180.81 -0.44 -12.13 16 4 C 0.23 5.37 4.23 -5.19 -0.02 5.35 16 5 C -0.53 -14.88 9.94 -34.44 -0.34 -15.22 16 6 H 0.07 2.32 8.06 -52.49 -0.42 1.90 16 7 C 0.07 2.10 5.47 -17.82 -0.10 2.01 16 8 N -0.90 -27.21 13.96 55.43 0.77 -26.43 16 9 Si 0.88 20.92 27.47 -169.99 -4.67 16.25 16 10 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 11 H -0.28 -6.71 7.11 56.52 0.40 -6.30 16 12 H -0.27 -5.90 6.54 56.52 0.37 -5.53 16 13 C 0.70 13.97 8.10 -86.92 -0.70 13.27 16 14 O -0.56 -13.09 13.13 5.29 0.07 -13.02 16 15 N -0.68 -10.93 5.05 -14.10 -0.07 -11.00 16 16 C 0.18 2.73 6.45 -83.49 -0.54 2.19 16 17 C -0.09 -1.29 8.83 -39.10 -0.35 -1.63 16 18 C -0.13 -1.50 10.10 -39.46 -0.40 -1.90 16 19 C 0.07 0.81 11.17 -17.53 -0.20 0.61 16 20 N -0.44 -6.14 10.32 -11.49 -0.12 -6.26 16 21 C 0.07 1.07 7.19 -17.26 -0.12 0.94 16 22 Br -0.01 -0.18 32.48 -68.01 -2.21 -2.39 16 23 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 24 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 25 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 26 H 0.09 1.43 8.07 -51.93 -0.42 1.01 16 27 H 0.06 0.78 6.29 -51.93 -0.33 0.45 16 28 H 0.03 0.75 7.13 -51.93 -0.37 0.38 16 29 H 0.04 0.96 6.85 -51.93 -0.36 0.60 16 30 H 0.27 7.52 8.31 -40.82 -0.34 7.19 16 31 H 0.41 5.60 5.21 -40.82 -0.21 5.39 16 32 H 0.17 2.76 5.89 -52.49 -0.31 2.45 16 33 H 0.14 1.19 8.06 -52.49 -0.42 0.76 16 34 H 0.16 1.26 8.06 -52.48 -0.42 0.84 16 LS Contribution 309.61 15.07 4.67 4.67 Total: -1.00 -33.04 309.61 -8.11 -41.15 By element: Atomic # 1 Polarization: 7.41 SS G_CDS: -3.70 Total: 3.71 kcal Atomic # 6 Polarization: 7.87 SS G_CDS: -2.41 Total: 5.46 kcal Atomic # 7 Polarization: -55.97 SS G_CDS: 0.14 Total: -55.83 kcal Atomic # 8 Polarization: -13.09 SS G_CDS: 0.07 Total: -13.02 kcal Atomic # 14 Polarization: 20.92 SS G_CDS: -4.67 Total: 16.25 kcal Atomic # 35 Polarization: -0.18 SS G_CDS: -2.21 Total: -2.39 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -33.04 -8.11 -41.15 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000119844571.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.664 kcal (2) G-P(sol) polarization free energy of solvation -33.041 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.623 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.112 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.153 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.511 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds