Wall clock time and date at job start Tue Mar 31 2020 14:23:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46503 * 109.46997 * 2 1 4 4 C 1.46501 * 119.99937 * 269.99804 * 3 2 1 5 5 C 1.50702 * 109.47174 * 270.00198 * 4 3 2 6 6 H 1.07998 * 119.99681 * 359.97438 * 5 4 3 7 7 C 1.37871 * 119.99552 * 179.97438 * 5 4 3 8 8 N 1.31515 * 119.99857 * 179.97438 * 7 5 4 9 9 Si 1.86803 * 120.00418 * 0.02562 * 7 5 4 10 10 H 1.48502 * 109.47087 * 89.99810 * 9 7 5 11 11 H 1.48505 * 109.47058 * 209.99740 * 9 7 5 12 12 H 1.48500 * 109.47053 * 329.99686 * 9 7 5 13 13 C 1.34776 * 119.99601 * 90.00178 * 3 2 1 14 14 O 1.21589 * 119.99330 * 179.97438 * 13 3 2 15 15 N 1.34770 * 120.00355 * 0.02562 * 13 3 2 16 16 C 1.40012 * 119.99757 * 185.69572 * 15 13 3 17 17 C 1.39217 * 120.49339 * 24.52438 * 16 15 13 18 18 C 1.38552 * 118.37250 * 180.24117 * 17 16 15 19 19 C 1.38240 * 119.25275 * 359.46071 * 18 17 16 20 20 N 1.31875 * 120.92865 * 0.29343 * 19 18 17 21 21 C 1.31882 * 121.78154 * 359.97438 * 20 19 18 22 22 Br 1.89109 * 119.67597 * 179.97438 * 21 20 19 23 23 H 1.08998 * 109.47684 * 60.00124 * 1 2 3 24 24 H 1.09002 * 109.47166 * 180.02562 * 1 2 3 25 25 H 1.09003 * 109.47176 * 299.99471 * 1 2 3 26 26 H 1.08998 * 109.47031 * 239.99803 * 2 1 3 27 27 H 1.09001 * 109.47441 * 120.00340 * 2 1 3 28 28 H 1.08997 * 109.46595 * 30.00148 * 4 3 2 29 29 H 1.08992 * 109.46777 * 150.00138 * 4 3 2 30 30 H 0.97001 * 120.00658 * 179.97438 * 8 7 5 31 31 H 0.97003 * 120.00434 * 5.69029 * 15 13 3 32 32 H 1.08000 * 120.81198 * 359.97438 * 17 16 15 33 33 H 1.07992 * 120.37157 * 179.73371 * 18 17 16 34 34 H 1.08003 * 119.53098 * 180.27502 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.2625 2.0718 -1.2687 5 6 3.6857 1.8350 -1.7038 6 1 4.3428 1.2309 -1.0957 7 6 4.1489 2.3896 -2.8780 8 7 5.3912 2.1834 -3.2574 9 14 3.0126 3.4351 -3.9292 10 1 3.1161 4.8554 -3.5082 11 1 3.4056 3.3119 -5.3561 12 1 1.6129 2.9691 -3.7593 13 6 2.2429 2.0165 1.1672 14 8 2.6486 3.1627 1.1672 15 7 2.0188 1.3810 2.3344 16 6 2.1370 2.0762 3.5439 17 6 1.9779 3.4587 3.5826 18 6 2.1091 4.1028 4.8023 19 6 2.3804 3.3570 5.9342 20 7 2.5205 2.0475 5.8657 21 6 2.4088 1.3958 4.7246 22 35 2.6219 -0.4830 4.6947 23 1 -0.3634 0.5138 -0.8899 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3634 0.5138 0.8900 26 1 1.8933 -0.5139 -0.8900 27 1 1.8933 -0.5139 0.8899 28 1 1.5816 1.6877 -2.0283 29 1 2.0955 3.1410 -1.1384 30 1 5.7171 2.5733 -4.0837 31 1 1.7756 0.4420 2.3365 32 1 1.7618 4.0161 2.6831 33 1 1.9964 5.1747 4.8686 34 1 2.4792 3.8539 6.8881 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000119844571.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:23:17 Heat of formation + Delta-G solvation = 2.192493 kcal Electronic energy + Delta-G solvation = -19927.450775 eV Core-core repulsion = 16713.477493 eV Total energy + Delta-G solvation = -3213.973282 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 327.032 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -42.14742 -40.63883 -37.36710 -36.40645 -34.79306 -33.78732 -32.24722 -31.89780 -30.57594 -29.19230 -25.43708 -24.56245 -24.36495 -23.57058 -21.01494 -19.69461 -19.10875 -18.42262 -17.82264 -17.33801 -16.73699 -16.56606 -15.98515 -15.34604 -15.29614 -15.03772 -14.81766 -14.53374 -14.17995 -13.94994 -13.51589 -13.25078 -13.20056 -12.65387 -12.46035 -12.30357 -12.13671 -12.02867 -11.99864 -11.73852 -11.62560 -11.31512 -10.81745 -10.74097 -10.44311 -9.69437 -9.22986 -8.32528 -6.38419 -0.23240 0.11069 0.22439 1.33744 1.39290 1.43045 1.48680 1.99345 2.32457 2.64530 2.74988 3.02580 3.45454 3.67361 3.89745 3.99889 4.04787 4.28954 4.34813 4.45204 4.70471 4.81409 4.82328 4.91698 4.94878 5.10162 5.14324 5.31365 5.44918 5.49713 5.58785 5.77470 6.24687 6.62125 6.63321 6.78499 7.21876 7.39845 8.84603 Molecular weight = 327.03amu Principal moments of inertia in cm(-1) A = 0.018008 B = 0.004226 C = 0.003853 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1554.508699 B = 6624.663123 C = 7264.559807 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.094 3.906 3 N -0.604 5.604 4 C 0.241 3.759 5 C -0.538 4.538 6 H 0.026 0.974 7 C 0.012 3.988 8 N -0.947 5.947 9 Si 0.949 3.051 10 H -0.275 1.275 11 H -0.278 1.278 12 H -0.234 1.234 13 C 0.699 3.301 14 O -0.606 6.606 15 N -0.669 5.669 16 C 0.148 3.852 17 C -0.106 4.106 18 C -0.118 4.118 19 C 0.081 3.919 20 N -0.455 5.455 21 C 0.064 3.936 22 Br -0.003 7.003 23 H 0.057 0.943 24 H 0.097 0.903 25 H 0.054 0.946 26 H 0.086 0.914 27 H 0.079 0.921 28 H 0.058 0.942 29 H 0.026 0.974 30 H 0.268 0.732 31 H 0.417 0.583 32 H 0.149 0.851 33 H 0.180 0.820 34 H 0.205 0.795 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.333 -3.571 17.262 22.102 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.028 4.028 3 N -0.337 5.337 4 C 0.119 3.881 5 C -0.577 4.577 6 H 0.044 0.956 7 C -0.186 4.186 8 N -0.587 5.587 9 Si 0.771 3.229 10 H -0.201 1.201 11 H -0.203 1.203 12 H -0.156 1.156 13 C 0.401 3.599 14 O -0.485 6.485 15 N -0.319 5.319 16 C 0.046 3.954 17 C -0.135 4.135 18 C -0.138 4.138 19 C -0.080 4.080 20 N -0.165 5.165 21 C -0.154 4.154 22 Br 0.081 6.919 23 H 0.076 0.924 24 H 0.116 0.884 25 H 0.073 0.927 26 H 0.105 0.895 27 H 0.097 0.903 28 H 0.076 0.924 29 H 0.044 0.956 30 H 0.077 0.923 31 H 0.259 0.741 32 H 0.167 0.833 33 H 0.198 0.802 34 H 0.222 0.778 Dipole moment (debyes) X Y Z Total from point charges -12.697 -3.990 17.716 22.158 hybrid contribution 0.138 0.707 -1.524 1.686 sum -12.559 -3.283 16.192 20.753 Atomic orbital electron populations 1.22177 0.93449 1.04000 1.02328 1.21788 0.96023 0.81178 1.03799 1.47284 1.66769 1.15239 1.04396 1.19323 0.94868 0.93110 0.80788 1.21567 0.97132 1.32249 1.06729 0.95603 1.25849 0.96694 0.97155 0.98914 1.70059 1.17576 1.46591 1.24452 0.85707 0.80560 0.79006 0.77607 1.20076 1.20310 1.15644 1.15988 0.78519 0.84569 0.80856 1.90822 1.52873 1.18598 1.86229 1.42822 1.71877 1.14700 1.02541 1.18413 0.98852 0.93196 0.84967 1.22078 0.98294 0.92202 1.00929 1.22609 0.96486 1.03605 0.91079 1.23390 0.96312 0.87591 1.00675 1.67400 1.12156 1.11831 1.25082 1.22442 1.08674 0.93684 0.90632 1.96715 1.96543 1.00114 1.98555 0.92411 0.88387 0.92717 0.89545 0.90264 0.92430 0.95552 0.92298 0.74131 0.83328 0.80237 0.77799 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.45 10.24 71.98 0.74 -2.71 16 2 C 0.09 2.71 5.94 86.38 0.51 3.23 16 3 N -0.60 -23.86 2.46 -844.22 -2.07 -25.93 16 4 C 0.24 11.27 4.23 85.63 0.36 11.63 16 5 C -0.54 -31.06 9.94 25.60 0.25 -30.80 16 6 H 0.03 1.69 8.06 -2.91 -0.02 1.67 16 7 C 0.01 0.69 5.47 84.65 0.46 1.15 16 8 N -0.95 -59.44 13.96 21.44 0.30 -59.14 16 9 Si 0.95 43.13 27.47 68.60 1.88 45.02 16 10 H -0.28 -12.56 7.11 99.48 0.71 -11.85 16 11 H -0.28 -12.24 7.11 99.48 0.71 -11.53 16 12 H -0.23 -9.33 6.54 99.48 0.65 -8.68 16 13 C 0.70 28.37 8.10 179.06 1.45 29.82 16 14 O -0.61 -29.10 13.13 -4.00 -0.05 -29.15 16 15 N -0.67 -21.51 5.05 -316.79 -1.60 -23.11 16 16 C 0.15 4.58 6.45 38.24 0.25 4.83 16 17 C -0.11 -3.10 8.83 22.58 0.20 -2.90 16 18 C -0.12 -2.41 10.10 22.35 0.23 -2.19 16 19 C 0.08 1.59 11.17 84.69 0.95 2.54 16 20 N -0.45 -11.80 10.32 -190.26 -1.96 -13.76 16 21 C 0.06 1.81 7.19 84.86 0.61 2.42 16 22 Br 0.00 -0.07 32.48 -20.37 -0.66 -0.73 16 23 H 0.06 1.32 8.14 -2.39 -0.02 1.30 16 24 H 0.10 1.49 8.14 -2.39 -0.02 1.47 16 25 H 0.05 1.15 8.14 -2.39 -0.02 1.13 16 26 H 0.09 2.60 8.07 -2.39 -0.02 2.58 16 27 H 0.08 1.95 6.29 -2.39 -0.02 1.93 16 28 H 0.06 2.43 7.13 -2.39 -0.02 2.41 16 29 H 0.03 1.30 6.85 -2.39 -0.02 1.29 16 30 H 0.27 15.64 8.31 -92.71 -0.77 14.87 16 31 H 0.42 11.27 5.21 -92.71 -0.48 10.78 16 32 H 0.15 5.00 5.89 -2.91 -0.02 4.99 16 33 H 0.18 2.31 8.06 -2.91 -0.02 2.29 16 34 H 0.21 2.20 8.06 -2.91 -0.02 2.17 16 Total: -1.00 -75.42 309.61 2.44 -72.99 By element: Atomic # 1 Polarization: 16.22 SS G_CDS: 0.60 Total: 16.81 kcal Atomic # 6 Polarization: 11.01 SS G_CDS: 6.01 Total: 17.01 kcal Atomic # 7 Polarization: -116.61 SS G_CDS: -5.34 Total: -121.94 kcal Atomic # 8 Polarization: -29.10 SS G_CDS: -0.05 Total: -29.15 kcal Atomic # 14 Polarization: 43.13 SS G_CDS: 1.88 Total: 45.02 kcal Atomic # 35 Polarization: -0.07 SS G_CDS: -0.66 Total: -0.73 kcal Total: -75.42 2.44 -72.99 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000119844571.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.179 kcal (2) G-P(sol) polarization free energy of solvation -75.423 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.244 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.437 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.986 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.192 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds