Wall clock time and date at job start Tue Mar 31 2020 14:23:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46500 * 109.47026 * 2 1 4 4 C 1.36937 * 120.00281 * 274.79292 * 3 2 1 5 5 H 1.08004 * 119.99414 * 16.37885 * 4 3 2 6 6 C 1.38808 * 119.99930 * 196.37179 * 4 3 2 7 7 N 1.31619 * 120.00142 * 6.14807 * 6 4 3 8 8 Si 1.86805 * 119.99856 * 186.14899 * 6 4 3 9 9 H 1.48507 * 109.46836 * 59.99868 * 8 6 4 10 10 H 1.48491 * 109.47197 * 180.02562 * 8 6 4 11 11 H 1.48494 * 109.47114 * 300.00304 * 8 6 4 12 12 C 1.46502 * 119.99693 * 94.79926 * 3 2 1 13 13 C 1.50696 * 109.47186 * 89.99668 * 12 3 2 14 14 O 1.21279 * 120.00209 * 0.02562 * 13 12 3 15 15 N 1.34776 * 120.00116 * 179.97438 * 13 12 3 16 16 C 1.39439 * 120.00070 * 175.55101 * 15 13 12 17 17 C 1.39036 * 119.68610 * 185.34977 * 16 15 13 18 18 C 1.38352 * 119.11537 * 179.97438 * 17 16 15 19 19 C 1.38907 * 118.48278 * 0.02562 * 18 17 16 20 20 Br 1.89101 * 120.35435 * 179.97438 * 19 18 17 21 21 C 1.38156 * 119.29459 * 359.97438 * 19 18 17 22 22 N 1.31936 * 120.83271 * 359.74365 * 21 19 18 23 23 H 1.09005 * 109.47124 * 299.99184 * 1 2 3 24 24 H 1.08996 * 109.47536 * 59.99576 * 1 2 3 25 25 H 1.09005 * 109.47380 * 179.97438 * 1 2 3 26 26 H 1.09008 * 109.46544 * 240.00352 * 2 1 3 27 27 H 1.08996 * 109.47536 * 120.00423 * 2 1 3 28 28 H 0.96997 * 119.99625 * 179.97438 * 7 6 4 29 29 H 1.08997 * 109.46910 * 329.99934 * 12 3 2 30 30 H 1.08995 * 109.47233 * 209.99924 * 12 3 2 31 31 H 0.97002 * 119.99833 * 355.27780 * 15 13 12 32 32 H 1.08005 * 120.44207 * 359.95665 * 17 16 15 33 33 H 1.07998 * 120.76019 * 180.02562 * 18 17 16 34 34 H 1.08004 * 119.58470 * 180.02562 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1531 2.0598 -1.1817 5 1 1.6641 1.6948 -2.0728 6 6 2.9182 3.2169 -1.2342 7 7 3.6114 3.5958 -0.1816 8 14 2.9638 4.2362 -2.7990 9 1 1.5915 4.6981 -3.1291 10 1 3.8476 5.4124 -2.5980 11 1 3.4888 3.4080 -3.9141 12 6 2.3625 2.0364 1.2643 13 6 3.8154 1.7891 1.5790 14 8 4.4964 1.1308 0.8216 15 7 4.3582 2.3003 2.7017 16 6 5.6759 1.9951 3.0405 17 6 6.1941 2.4335 4.2539 18 6 7.5029 2.1236 4.5783 19 6 8.2521 1.3827 3.6731 20 35 10.0464 0.9300 4.0623 21 6 7.6724 0.9801 2.4855 22 7 6.4198 1.2864 2.2064 23 1 -0.3634 0.5137 0.8901 24 1 -0.3634 0.5139 -0.8899 25 1 -0.3634 -1.0277 -0.0005 26 1 1.8932 -0.5138 -0.8901 27 1 1.8934 -0.5139 0.8899 28 1 4.1463 4.4041 -0.2185 29 1 1.7433 1.6304 2.0642 30 1 2.1870 3.1086 1.1775 31 1 3.8335 2.8837 3.2720 32 1 5.5832 3.0085 4.9341 33 1 7.9322 2.4502 5.5139 34 1 8.2505 0.4035 1.7785 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000121021695.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:23:31 Heat of formation + Delta-G solvation = 49.347865 kcal Electronic energy + Delta-G solvation = -19977.221860 eV Core-core repulsion = 16765.293389 eV Total energy + Delta-G solvation = -3211.928471 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 327.032 amu Computer time = 1.67 seconds Orbital eigenvalues (eV) -40.23001 -38.12831 -35.64570 -33.93770 -32.50432 -31.90175 -31.24962 -29.40849 -28.49701 -26.59405 -23.92823 -23.57051 -22.47885 -20.68448 -19.52849 -17.82575 -16.68959 -16.26510 -15.64283 -15.30708 -14.95561 -14.45554 -14.21602 -13.77947 -13.60970 -13.12088 -12.97339 -12.65996 -12.44229 -11.97527 -11.79724 -11.39590 -11.18967 -10.94438 -10.83571 -10.47209 -10.38013 -10.24206 -9.93405 -9.86379 -9.70729 -9.59164 -9.34855 -8.73860 -8.14323 -7.71553 -6.89743 -5.83528 -3.20698 1.22123 1.44092 1.72575 3.38248 3.44027 3.44465 3.61243 3.84559 4.39532 4.54932 4.71123 4.91052 5.09999 5.20581 5.40275 5.42588 5.74998 5.86778 5.96131 6.01974 6.21028 6.25869 6.30380 6.49707 6.56072 6.61360 6.82162 7.07477 7.21017 7.29276 7.69483 7.93045 8.27739 8.58819 9.14348 9.60226 9.79857 10.21473 11.25191 Molecular weight = 327.03amu Principal moments of inertia in cm(-1) A = 0.020393 B = 0.003327 C = 0.003097 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1372.717130 B = 8413.726126 C = 9038.739241 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.144 3.856 3 N -0.576 5.576 4 C -0.236 4.236 5 H 0.076 0.924 6 C -0.002 4.002 7 N -0.917 5.917 8 Si 0.917 3.083 9 H -0.285 1.285 10 H -0.292 1.292 11 H -0.285 1.285 12 C 0.171 3.829 13 C 0.514 3.486 14 O -0.463 6.463 15 N -0.665 5.665 16 C 0.402 3.598 17 C -0.226 4.226 18 C -0.019 4.019 19 C -0.204 4.204 20 Br -0.059 7.059 21 C 0.173 3.827 22 N -0.463 5.463 23 H 0.044 0.956 24 H 0.052 0.948 25 H 0.039 0.961 26 H 0.045 0.955 27 H 0.037 0.963 28 H 0.254 0.746 29 H 0.032 0.968 30 H 0.116 0.884 31 H 0.407 0.593 32 H 0.139 0.861 33 H 0.138 0.862 34 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.817 -2.570 13.456 15.301 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.017 3.983 3 N -0.295 5.295 4 C -0.365 4.365 5 H 0.094 0.906 6 C -0.197 4.197 7 N -0.565 5.565 8 Si 0.748 3.252 9 H -0.212 1.212 10 H -0.217 1.217 11 H -0.211 1.211 12 C 0.040 3.960 13 C 0.300 3.700 14 O -0.328 6.328 15 N -0.309 5.309 16 C 0.168 3.832 17 C -0.251 4.251 18 C -0.046 4.046 19 C -0.288 4.288 20 Br 0.024 6.976 21 C 0.011 3.989 22 N -0.178 5.178 23 H 0.063 0.937 24 H 0.071 0.929 25 H 0.058 0.942 26 H 0.063 0.937 27 H 0.055 0.945 28 H 0.065 0.935 29 H 0.050 0.950 30 H 0.134 0.866 31 H 0.242 0.758 32 H 0.156 0.844 33 H 0.156 0.844 34 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges 7.465 -3.388 12.074 14.594 hybrid contribution 0.123 1.445 0.195 1.464 sum 7.588 -1.942 12.269 14.556 Atomic orbital electron populations 1.22310 0.99464 0.99188 1.01459 1.20764 0.91841 0.86318 0.99330 1.43811 1.73917 1.09164 1.02648 1.19266 1.24205 1.04647 0.88413 0.90632 1.24805 0.97325 0.99799 0.97794 1.69545 1.32710 1.25528 1.28745 0.86115 0.77147 0.79359 0.82573 1.21187 1.21748 1.21117 1.20726 0.87533 1.01077 0.86665 1.22749 0.92753 0.76922 0.77621 1.90618 1.62019 1.36747 1.43462 1.44711 1.09001 1.49758 1.27478 1.19017 0.86799 0.89008 0.88388 1.21500 0.96922 1.08301 0.98393 1.21147 0.92672 0.92972 0.97831 1.22629 0.93124 1.11749 1.01286 1.96612 1.13023 1.92989 1.94952 1.22781 0.90372 0.93326 0.92455 1.68083 1.04751 1.14369 1.30633 0.93716 0.92920 0.94246 0.93666 0.94478 0.93472 0.94996 0.86646 0.75836 0.84365 0.84409 0.82449 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 48. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.86 10.21 37.16 0.38 -2.48 16 2 C 0.14 3.01 6.39 -4.04 -0.03 2.98 16 3 N -0.58 -14.02 2.03 -174.61 -0.35 -14.37 16 4 C -0.24 -6.34 9.75 -15.06 -0.15 -6.48 16 5 H 0.08 1.99 7.84 -52.48 -0.41 1.58 16 6 C 0.00 -0.04 5.25 -17.43 -0.09 -0.13 16 7 N -0.92 -25.09 8.24 55.49 0.46 -24.63 16 8 Si 0.92 21.97 29.56 -169.99 -5.02 16.95 16 9 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 10 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 11 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 12 C 0.17 3.80 5.40 -5.19 -0.03 3.77 16 13 C 0.51 11.84 5.71 -10.99 -0.06 11.77 16 14 O -0.46 -12.79 14.41 5.56 0.08 -12.71 16 15 N -0.66 -12.27 5.39 -11.42 -0.06 -12.33 16 16 C 0.40 7.33 7.42 -154.69 -1.15 6.18 16 17 C -0.23 -3.10 9.94 -39.24 -0.39 -3.49 16 18 C -0.02 -0.24 9.93 -39.29 -0.39 -0.63 16 19 C -0.20 -2.90 6.25 -39.36 -0.25 -3.14 16 20 Br -0.06 -0.71 33.73 -68.01 -2.29 -3.00 16 21 C 0.17 2.92 10.93 -17.54 -0.19 2.73 16 22 N -0.46 -9.56 7.89 -12.34 -0.10 -9.66 16 23 H 0.04 0.75 8.14 -51.93 -0.42 0.32 16 24 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 25 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 26 H 0.04 0.98 8.08 -51.92 -0.42 0.56 16 27 H 0.04 0.74 8.04 -51.93 -0.42 0.33 16 28 H 0.25 7.02 8.31 -40.82 -0.34 6.68 16 29 H 0.03 0.60 8.07 -51.93 -0.42 0.18 16 30 H 0.12 2.72 6.25 -51.93 -0.32 2.40 16 31 H 0.41 5.83 8.70 -40.82 -0.36 5.48 16 32 H 0.14 1.42 8.06 -52.48 -0.42 1.00 16 33 H 0.14 1.35 8.06 -52.49 -0.42 0.92 16 34 H 0.16 2.41 8.06 -52.48 -0.42 1.99 16 LS Contribution 313.66 15.07 4.73 4.73 Total: -1.00 -32.39 313.66 -8.93 -41.32 By element: Atomic # 1 Polarization: 6.67 SS G_CDS: -4.02 Total: 2.66 kcal Atomic # 6 Polarization: 13.40 SS G_CDS: -2.34 Total: 11.06 kcal Atomic # 7 Polarization: -60.95 SS G_CDS: -0.06 Total: -61.00 kcal Atomic # 8 Polarization: -12.79 SS G_CDS: 0.08 Total: -12.71 kcal Atomic # 14 Polarization: 21.97 SS G_CDS: -5.02 Total: 16.95 kcal Atomic # 35 Polarization: -0.71 SS G_CDS: -2.29 Total: -3.00 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -32.39 -8.93 -41.32 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000121021695.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.664 kcal (2) G-P(sol) polarization free energy of solvation -32.389 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.275 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.928 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.316 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.348 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.68 seconds