Wall clock time and date at job start Tue Mar 31 2020 14:23:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46500 * 109.47026 * 2 1 4 4 C 1.36937 * 120.00281 * 274.79292 * 3 2 1 5 5 H 1.08004 * 119.99414 * 16.37885 * 4 3 2 6 6 C 1.38808 * 119.99930 * 196.37179 * 4 3 2 7 7 N 1.31619 * 120.00142 * 6.14807 * 6 4 3 8 8 Si 1.86805 * 119.99856 * 186.14899 * 6 4 3 9 9 H 1.48507 * 109.46836 * 59.99868 * 8 6 4 10 10 H 1.48491 * 109.47197 * 180.02562 * 8 6 4 11 11 H 1.48494 * 109.47114 * 300.00304 * 8 6 4 12 12 C 1.46502 * 119.99693 * 94.79926 * 3 2 1 13 13 C 1.50696 * 109.47186 * 89.99668 * 12 3 2 14 14 O 1.21279 * 120.00209 * 0.02562 * 13 12 3 15 15 N 1.34776 * 120.00116 * 179.97438 * 13 12 3 16 16 C 1.39439 * 120.00070 * 175.55101 * 15 13 12 17 17 C 1.39036 * 119.68610 * 185.34977 * 16 15 13 18 18 C 1.38352 * 119.11537 * 179.97438 * 17 16 15 19 19 C 1.38907 * 118.48278 * 0.02562 * 18 17 16 20 20 Br 1.89101 * 120.35435 * 179.97438 * 19 18 17 21 21 C 1.38156 * 119.29459 * 359.97438 * 19 18 17 22 22 N 1.31936 * 120.83271 * 359.74365 * 21 19 18 23 23 H 1.09005 * 109.47124 * 299.99184 * 1 2 3 24 24 H 1.08996 * 109.47536 * 59.99576 * 1 2 3 25 25 H 1.09005 * 109.47380 * 179.97438 * 1 2 3 26 26 H 1.09008 * 109.46544 * 240.00352 * 2 1 3 27 27 H 1.08996 * 109.47536 * 120.00423 * 2 1 3 28 28 H 0.96997 * 119.99625 * 179.97438 * 7 6 4 29 29 H 1.08997 * 109.46910 * 329.99934 * 12 3 2 30 30 H 1.08995 * 109.47233 * 209.99924 * 12 3 2 31 31 H 0.97002 * 119.99833 * 355.27780 * 15 13 12 32 32 H 1.08005 * 120.44207 * 359.95665 * 17 16 15 33 33 H 1.07998 * 120.76019 * 180.02562 * 18 17 16 34 34 H 1.08004 * 119.58470 * 180.02562 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1531 2.0598 -1.1817 5 1 1.6641 1.6948 -2.0728 6 6 2.9182 3.2169 -1.2342 7 7 3.6114 3.5958 -0.1816 8 14 2.9638 4.2362 -2.7990 9 1 1.5915 4.6981 -3.1291 10 1 3.8476 5.4124 -2.5980 11 1 3.4888 3.4080 -3.9141 12 6 2.3625 2.0364 1.2643 13 6 3.8154 1.7891 1.5790 14 8 4.4964 1.1308 0.8216 15 7 4.3582 2.3003 2.7017 16 6 5.6759 1.9951 3.0405 17 6 6.1941 2.4335 4.2539 18 6 7.5029 2.1236 4.5783 19 6 8.2521 1.3827 3.6731 20 35 10.0464 0.9300 4.0623 21 6 7.6724 0.9801 2.4855 22 7 6.4198 1.2864 2.2064 23 1 -0.3634 0.5137 0.8901 24 1 -0.3634 0.5139 -0.8899 25 1 -0.3634 -1.0277 -0.0005 26 1 1.8932 -0.5138 -0.8901 27 1 1.8934 -0.5139 0.8899 28 1 4.1463 4.4041 -0.2185 29 1 1.7433 1.6304 2.0642 30 1 2.1870 3.1086 1.1775 31 1 3.8335 2.8837 3.2720 32 1 5.5832 3.0085 4.9341 33 1 7.9322 2.4502 5.5139 34 1 8.2505 0.4035 1.7785 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000121021695.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:23:30 Heat of formation + Delta-G solvation = 29.408073 kcal Electronic energy + Delta-G solvation = -19978.086515 eV Core-core repulsion = 16765.293389 eV Total energy + Delta-G solvation = -3212.793126 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 327.032 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.55403 -39.74263 -37.36474 -35.50897 -33.78818 -33.72359 -32.44791 -31.02929 -29.87368 -28.32039 -25.59296 -24.91065 -23.79842 -22.33954 -21.15221 -19.30511 -18.40262 -17.80551 -17.11900 -16.81755 -16.38361 -15.96854 -15.67079 -15.52375 -15.20933 -14.68523 -14.34638 -14.16805 -14.00591 -13.39184 -13.10892 -13.06446 -12.78671 -12.60685 -12.50850 -12.29833 -11.99672 -11.82225 -11.55806 -11.43201 -11.11186 -10.89633 -10.73362 -10.56672 -9.81247 -9.03242 -8.77407 -7.85034 -5.22329 -0.01776 0.31240 0.61136 1.45715 1.48908 1.53547 2.23992 2.36658 2.55579 2.99030 3.36434 3.49304 3.67883 3.85860 3.98824 4.04493 4.39518 4.52203 4.67863 4.68530 4.81057 4.82187 4.92495 5.06422 5.07787 5.27180 5.32452 5.39263 5.59608 5.62808 5.94138 6.30832 6.54408 7.13112 7.27836 7.82673 8.02308 8.26326 9.19183 Molecular weight = 327.03amu Principal moments of inertia in cm(-1) A = 0.020393 B = 0.003327 C = 0.003097 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1372.717130 B = 8413.726126 C = 9038.739241 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.140 3.860 3 N -0.594 5.594 4 C -0.248 4.248 5 H 0.071 0.929 6 C -0.048 4.048 7 N -0.925 5.925 8 Si 0.970 3.030 9 H -0.272 1.272 10 H -0.298 1.298 11 H -0.293 1.293 12 C 0.171 3.829 13 C 0.518 3.482 14 O -0.520 6.520 15 N -0.659 5.659 16 C 0.367 3.633 17 C -0.202 4.202 18 C -0.013 4.013 19 C -0.195 4.195 20 Br -0.033 7.033 21 C 0.148 3.852 22 N -0.519 5.519 23 H 0.053 0.947 24 H 0.040 0.960 25 H 0.069 0.931 26 H 0.027 0.973 27 H 0.042 0.958 28 H 0.243 0.757 29 H 0.068 0.932 30 H 0.100 0.900 31 H 0.425 0.575 32 H 0.180 0.820 33 H 0.179 0.821 34 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.908 -2.100 15.755 17.330 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.015 3.985 3 N -0.314 5.314 4 C -0.378 4.378 5 H 0.089 0.911 6 C -0.242 4.242 7 N -0.574 5.574 8 Si 0.800 3.200 9 H -0.198 1.198 10 H -0.224 1.224 11 H -0.220 1.220 12 C 0.040 3.960 13 C 0.305 3.695 14 O -0.391 6.391 15 N -0.306 5.306 16 C 0.134 3.866 17 C -0.227 4.227 18 C -0.041 4.041 19 C -0.278 4.278 20 Br 0.051 6.949 21 C -0.013 4.013 22 N -0.235 5.235 23 H 0.072 0.928 24 H 0.059 0.941 25 H 0.087 0.913 26 H 0.045 0.955 27 H 0.060 0.940 28 H 0.053 0.947 29 H 0.086 0.914 30 H 0.118 0.882 31 H 0.263 0.737 32 H 0.197 0.803 33 H 0.197 0.803 34 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges 7.559 -2.916 14.435 16.554 hybrid contribution 0.238 1.225 -0.400 1.311 sum 7.798 -1.691 14.035 16.145 Atomic orbital electron populations 1.22119 0.96322 1.01101 1.01290 1.20895 0.94113 0.84788 0.98713 1.44037 1.74414 1.10321 1.02623 1.19465 1.23936 1.04955 0.89404 0.91123 1.25435 0.97668 1.00963 1.00149 1.69743 1.32952 1.25112 1.29572 0.85285 0.77368 0.77639 0.79672 1.19753 1.22445 1.21998 1.20740 0.87975 1.00265 0.86982 1.22699 0.92815 0.76093 0.77915 1.90587 1.63259 1.39434 1.45783 1.44194 1.09780 1.49932 1.26696 1.19302 0.86556 0.90646 0.90085 1.21858 0.97502 1.06574 0.96721 1.21650 0.92055 0.91614 0.98732 1.22798 0.94417 1.10312 1.00316 1.96644 1.10804 1.92853 1.94585 1.22821 0.89784 0.94640 0.94022 1.67849 1.06553 1.15995 1.33067 0.92783 0.94097 0.91258 0.95489 0.93957 0.94668 0.91415 0.88194 0.73689 0.80289 0.80349 0.82535 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.96 10.21 71.98 0.74 -4.22 16 2 C 0.14 5.87 6.39 86.38 0.55 6.43 16 3 N -0.59 -29.24 2.03 -706.35 -1.43 -30.67 16 4 C -0.25 -13.55 9.75 84.03 0.82 -12.73 16 5 H 0.07 3.81 7.84 -2.91 -0.02 3.79 16 6 C -0.05 -2.67 5.25 84.86 0.45 -2.22 16 7 N -0.93 -51.74 8.24 21.65 0.18 -51.56 16 8 Si 0.97 46.00 29.56 68.60 2.03 48.03 16 9 H -0.27 -12.16 7.11 99.48 0.71 -11.45 16 10 H -0.30 -14.31 7.11 99.48 0.71 -13.60 16 11 H -0.29 -14.15 7.11 99.48 0.71 -13.44 16 12 C 0.17 7.60 5.40 85.63 0.46 8.07 16 13 C 0.52 24.26 5.71 87.66 0.50 24.76 16 14 O -0.52 -29.82 14.41 -3.03 -0.04 -29.86 16 15 N -0.66 -24.15 5.39 -308.44 -1.66 -25.82 16 16 C 0.37 13.18 7.42 132.91 0.99 14.16 16 17 C -0.20 -4.96 9.94 22.49 0.22 -4.74 16 18 C -0.01 -0.30 9.93 22.46 0.22 -0.07 16 19 C -0.19 -5.17 6.25 22.41 0.14 -5.03 16 20 Br -0.03 -0.70 33.73 -20.37 -0.69 -1.39 16 21 C 0.15 5.05 10.93 84.66 0.93 5.98 16 22 N -0.52 -21.93 7.89 -192.96 -1.52 -23.45 16 23 H 0.05 1.69 8.14 -2.38 -0.02 1.67 16 24 H 0.04 1.44 8.14 -2.39 -0.02 1.42 16 25 H 0.07 1.88 8.14 -2.38 -0.02 1.86 16 26 H 0.03 1.19 8.08 -2.38 -0.02 1.17 16 27 H 0.04 1.69 8.04 -2.39 -0.02 1.67 16 28 H 0.24 13.74 8.31 -92.71 -0.77 12.97 16 29 H 0.07 2.47 8.07 -2.39 -0.02 2.45 16 30 H 0.10 4.76 6.25 -2.39 -0.01 4.74 16 31 H 0.42 11.68 8.70 -92.71 -0.81 10.87 16 32 H 0.18 2.84 8.06 -2.91 -0.02 2.81 16 33 H 0.18 2.52 8.06 -2.91 -0.02 2.50 16 34 H 0.16 5.03 8.06 -2.91 -0.02 5.01 16 Total: -1.00 -73.08 313.66 3.19 -69.88 By element: Atomic # 1 Polarization: 14.13 SS G_CDS: 0.32 Total: 14.45 kcal Atomic # 6 Polarization: 24.37 SS G_CDS: 6.02 Total: 30.38 kcal Atomic # 7 Polarization: -127.06 SS G_CDS: -4.44 Total: -131.50 kcal Atomic # 8 Polarization: -29.82 SS G_CDS: -0.04 Total: -29.86 kcal Atomic # 14 Polarization: 46.00 SS G_CDS: 2.03 Total: 48.03 kcal Atomic # 35 Polarization: -0.70 SS G_CDS: -0.69 Total: -1.39 kcal Total: -73.08 3.19 -69.88 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000121021695.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.292 kcal (2) G-P(sol) polarization free energy of solvation -73.078 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.214 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.194 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.884 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.408 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds