Wall clock time and date at job start Tue Mar 31 2020 14:37:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31579 * 1 3 3 Si 1.86789 * 120.00187 * 2 1 4 4 H 1.48507 * 109.47097 * 269.99849 * 3 2 1 5 5 H 1.48500 * 109.47185 * 29.99614 * 3 2 1 6 6 H 1.48500 * 109.47623 * 149.99855 * 3 2 1 7 7 C 1.38629 * 119.99533 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00384 * 0.02562 * 7 2 1 9 9 O 1.34807 * 119.99634 * 180.02562 * 7 2 1 10 10 C 1.35798 * 116.99690 * 174.93982 * 9 7 2 11 11 C 1.38721 * 120.09240 * 5.59436 * 10 9 7 12 12 C 1.38350 * 119.98520 * 179.97438 * 11 10 9 13 13 F 1.35104 * 119.92264 * 179.97438 * 12 11 10 14 14 C 1.38529 * 120.15543 * 0.02562 * 12 11 10 15 15 C 1.38210 * 120.18149 * 359.70606 * 14 12 11 16 16 C 1.38722 * 120.00989 * 0.54987 * 15 14 12 17 17 N 1.39926 * 120.07554 * 179.74768 * 16 15 14 18 18 S 1.65606 * 120.00328 * 35.53572 * 17 16 15 19 19 O 1.42107 * 106.39628 * 306.81754 * 18 17 16 20 20 O 1.42095 * 106.40540 * 173.89556 * 18 17 16 21 21 C 1.76193 * 107.21676 * 60.35191 * 18 17 16 22 22 C 1.39875 * 126.04278 * 270.00217 * 21 18 17 23 23 N 1.30835 * 108.19976 * 179.74452 * 22 21 18 24 24 N 1.40089 * 108.21032 * 0.40272 * 23 22 21 25 25 H 0.96997 * 126.03701 * 179.85690 * 24 23 22 26 26 C 1.34946 * 107.91770 * 359.59356 * 24 23 22 27 27 H 0.97004 * 120.00004 * 0.02562 * 1 2 3 28 28 H 1.08006 * 120.00223 * 359.95131 * 11 10 9 29 29 H 1.08003 * 119.90945 * 179.97438 * 14 12 11 30 30 H 1.07999 * 119.99792 * 180.30221 * 15 14 12 31 31 H 0.97000 * 120.00234 * 215.53217 * 17 16 15 32 32 H 1.07993 * 125.89864 * 0.02562 * 22 21 18 33 33 H 1.08003 * 126.12115 * 180.26229 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3158 0.0000 0.0000 3 14 2.2498 1.6176 0.0000 4 1 2.4973 2.0463 -1.4001 5 1 1.4472 2.6526 0.7000 6 1 3.5473 1.4401 0.7000 7 6 2.0088 -1.2006 0.0005 8 1 1.4688 -2.1359 0.0005 9 8 3.3569 -1.2006 0.0011 10 6 3.9733 -2.4059 0.1083 11 6 3.2247 -3.5737 0.0942 12 6 3.8550 -4.8004 0.2031 13 9 3.1246 -5.9370 0.1897 14 6 5.2331 -4.8662 0.3268 15 6 5.9860 -3.7072 0.3360 16 6 5.3610 -2.4730 0.2327 17 7 6.1215 -1.2985 0.2472 18 16 7.6155 -1.2704 -0.4667 19 8 8.3465 -2.3545 0.0899 20 8 8.0615 0.0776 -0.4113 21 6 7.3858 -1.6489 -2.1721 22 6 7.4075 -2.9261 -2.7419 23 7 7.1939 -2.8040 -4.0269 24 7 7.0385 -1.4424 -4.3175 25 1 6.8710 -1.0614 -5.1936 26 6 7.1572 -0.7552 -3.1622 27 1 -0.4850 0.8401 -0.0004 28 1 2.1499 -3.5251 -0.0014 29 1 5.7210 -5.8259 0.4119 30 1 7.0607 -3.7621 0.4277 31 1 5.7736 -0.5007 0.6753 32 1 7.5679 -3.8533 -2.2119 33 1 7.0828 0.3162 -3.0482 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000122339859.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:37:20 Heat of formation + Delta-G solvation = -60.337577 kcal Electronic energy + Delta-G solvation = -25767.179176 eV Core-core repulsion = 21643.505474 eV Total energy + Delta-G solvation = -4123.673702 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 327.052 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -49.81994 -42.27550 -41.14528 -38.73261 -38.08459 -36.97040 -35.71856 -34.46903 -32.79251 -31.48453 -31.20802 -29.58357 -27.31211 -23.97870 -23.64046 -23.20457 -22.82847 -20.54053 -20.14228 -19.80606 -19.64580 -18.59759 -18.32253 -17.21796 -17.04742 -16.69443 -16.57748 -16.31115 -15.86246 -15.79903 -15.64023 -15.60729 -15.26666 -15.02916 -14.35780 -14.13056 -14.12023 -13.87927 -13.44461 -13.30492 -13.06730 -12.93256 -12.85963 -12.67748 -12.17953 -12.06949 -11.87752 -11.63969 -11.46167 -10.94727 -10.92789 -10.51482 -9.66797 -8.92295 -8.51824 -6.25712 -0.66213 0.22338 0.42537 0.53380 1.19194 1.34520 1.37780 1.52591 1.77548 2.04341 2.26191 2.55373 2.66874 2.86443 3.00844 3.20788 3.40247 3.76937 3.80771 3.96237 4.04155 4.22786 4.30338 4.32156 4.44400 4.87678 5.09040 5.19699 5.24755 5.25860 5.30345 5.63735 5.78606 5.89899 6.10024 6.10908 6.33990 6.80648 7.45542 8.58953 Molecular weight = 327.05amu Principal moments of inertia in cm(-1) A = 0.009983 B = 0.006253 C = 0.004854 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2804.161611 B = 4476.704395 C = 5766.681388 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C 0.014 3.986 3 Si 0.960 3.040 4 H -0.263 1.263 5 H -0.275 1.275 6 H -0.244 1.244 7 C -0.401 4.401 8 H 0.080 0.920 9 O -0.218 6.218 10 C 0.144 3.856 11 C -0.256 4.256 12 C 0.118 3.882 13 F -0.147 7.147 14 C -0.177 4.177 15 C -0.097 4.097 16 C 0.090 3.910 17 N -1.043 6.043 18 S 2.746 3.254 19 O -0.963 6.963 20 O -0.977 6.977 21 C -0.832 4.832 22 C 0.135 3.865 23 N -0.316 5.316 24 N -0.452 5.452 25 H 0.459 0.541 26 C 0.196 3.804 27 H 0.285 0.715 28 H 0.123 0.877 29 H 0.171 0.829 30 H 0.189 0.811 31 H 0.429 0.571 32 H 0.214 0.786 33 H 0.228 0.772 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.919 -1.740 -4.996 16.775 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.559 5.559 2 C -0.185 4.185 3 Si 0.782 3.218 4 H -0.187 1.187 5 H -0.200 1.200 6 H -0.167 1.167 7 C -0.477 4.477 8 H 0.098 0.902 9 O -0.124 6.124 10 C 0.090 3.910 11 C -0.277 4.277 12 C 0.098 3.902 13 F -0.126 7.126 14 C -0.197 4.197 15 C -0.118 4.118 16 C -0.007 4.007 17 N -0.793 5.793 18 S 2.836 3.164 19 O -0.953 6.953 20 O -0.968 6.968 21 C -0.934 4.934 22 C -0.056 4.056 23 N -0.137 5.137 24 N -0.157 5.157 25 H 0.307 0.693 26 C 0.039 3.961 27 H 0.095 0.905 28 H 0.141 0.859 29 H 0.188 0.812 30 H 0.206 0.794 31 H 0.266 0.734 32 H 0.230 0.770 33 H 0.244 0.756 Dipole moment (debyes) X Y Z Total from point charges 16.549 -1.980 -5.863 17.668 hybrid contribution -1.663 1.097 -0.107 1.995 sum 14.886 -0.883 -5.971 16.063 Atomic orbital electron populations 1.69744 1.07186 1.29766 1.49217 1.25286 0.95789 1.02255 0.95176 0.85361 0.79676 0.77128 0.79673 1.18742 1.19982 1.16687 1.20663 0.77883 0.96134 1.52996 0.90204 1.83495 1.21137 1.25833 1.81915 1.18968 0.91277 0.85087 0.95698 1.21048 1.01345 0.91676 1.13615 1.17588 0.90175 0.80521 1.01917 1.91443 1.78136 1.48982 1.94013 1.20967 0.90091 1.00799 1.07843 1.21676 1.02920 0.88673 0.98553 1.16672 0.86870 0.86807 1.10384 1.53020 1.37981 1.18417 1.69841 1.00282 0.70931 0.72490 0.72651 1.93464 1.69207 1.55603 1.77016 1.93550 1.79185 1.36513 1.87540 1.31397 1.35688 1.01365 1.24906 1.23924 0.93051 0.97652 0.90931 1.77349 1.24352 0.94879 1.17075 1.46868 1.53475 1.04773 1.10566 0.69268 1.23111 0.88147 1.00348 0.84504 0.90515 0.85939 0.81198 0.79408 0.73366 0.76987 0.75599 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -52.18 13.96 21.61 0.30 -51.88 16 2 C 0.01 0.77 5.49 84.82 0.47 1.23 16 3 Si 0.96 40.72 28.61 68.60 1.96 42.69 16 4 H -0.26 -10.59 7.11 99.48 0.71 -9.88 16 5 H -0.27 -11.27 7.11 99.48 0.71 -10.56 16 6 H -0.24 -9.67 7.11 99.48 0.71 -8.97 16 7 C -0.40 -21.62 9.95 67.91 0.68 -20.95 16 8 H 0.08 4.62 5.44 -2.91 -0.02 4.61 16 9 O -0.22 -10.24 8.16 -23.04 -0.19 -10.43 16 10 C 0.14 5.90 6.67 22.69 0.15 6.05 16 11 C -0.26 -10.57 9.14 22.41 0.20 -10.37 16 12 C 0.12 4.10 7.29 22.37 0.16 4.27 16 13 F -0.15 -5.08 17.26 44.97 0.78 -4.30 16 14 C -0.18 -4.91 10.02 22.33 0.22 -4.69 16 15 C -0.10 -2.71 9.26 22.38 0.21 -2.51 16 16 C 0.09 2.96 6.26 38.27 0.24 3.20 16 17 N -1.04 -30.21 5.64 -50.97 -0.29 -30.50 16 18 S 2.75 69.84 5.66 -56.49 -0.32 69.52 16 19 O -0.96 -25.89 14.83 -128.00 -1.90 -27.79 16 20 O -0.98 -27.86 17.85 -128.00 -2.28 -30.15 16 21 C -0.83 -19.42 6.00 21.99 0.13 -19.28 16 22 C 0.13 3.17 11.82 85.24 1.01 4.18 16 23 N -0.32 -7.70 12.70 -57.03 -0.72 -8.42 16 24 N -0.45 -8.27 7.36 -57.59 -0.42 -8.69 16 25 H 0.46 4.91 8.96 -213.33 -1.91 3.00 16 26 C 0.20 3.71 11.73 83.54 0.98 4.69 16 27 H 0.29 14.89 8.31 -92.71 -0.77 14.12 16 28 H 0.12 5.68 5.64 -2.91 -0.02 5.67 16 29 H 0.17 3.44 8.06 -2.91 -0.02 3.42 16 30 H 0.19 4.51 5.17 -2.91 -0.02 4.49 16 31 H 0.43 12.22 8.72 -96.74 -0.84 11.37 16 32 H 0.21 4.01 8.06 -2.91 -0.02 3.99 16 33 H 0.23 2.63 8.06 -2.91 -0.02 2.60 16 Total: -1.00 -70.11 313.42 -0.16 -70.27 By element: Atomic # 1 Polarization: 25.38 SS G_CDS: -1.52 Total: 23.86 kcal Atomic # 6 Polarization: -38.62 SS G_CDS: 4.45 Total: -34.17 kcal Atomic # 7 Polarization: -98.36 SS G_CDS: -1.13 Total: -99.49 kcal Atomic # 8 Polarization: -64.00 SS G_CDS: -4.37 Total: -68.37 kcal Atomic # 9 Polarization: -5.08 SS G_CDS: 0.78 Total: -4.30 kcal Atomic # 14 Polarization: 40.72 SS G_CDS: 1.96 Total: 42.69 kcal Atomic # 16 Polarization: 69.84 SS G_CDS: -0.32 Total: 69.52 kcal Total: -70.11 -0.16 -70.27 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000122339859.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.930 kcal (2) G-P(sol) polarization free energy of solvation -70.110 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.179 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.158 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.268 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.338 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds