Wall clock time and date at job start Tue Mar 31 2020 14:37:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31575 * 1 3 3 Si 1.86803 * 120.00285 * 2 1 4 4 H 1.48501 * 109.46937 * 270.00471 * 3 2 1 5 5 H 1.48504 * 109.46545 * 29.99818 * 3 2 1 6 6 H 1.48493 * 109.47358 * 149.99710 * 3 2 1 7 7 C 1.38636 * 120.00289 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99759 * 0.02562 * 7 2 1 9 9 O 1.34793 * 120.00074 * 179.97438 * 7 2 1 10 10 C 1.35802 * 117.00079 * 174.94418 * 9 7 2 11 11 C 1.38723 * 120.08302 * 5.59103 * 10 9 7 12 12 C 1.38354 * 119.98132 * 180.02562 * 11 10 9 13 13 F 1.35097 * 119.92423 * 180.02562 * 12 11 10 14 14 C 1.38536 * 120.15596 * 0.02562 * 12 11 10 15 15 C 1.38208 * 120.17684 * 359.67896 * 14 12 11 16 16 C 1.38716 * 120.01892 * 0.59614 * 15 14 12 17 17 N 1.39925 * 120.08383 * 179.69652 * 16 15 14 18 18 S 1.65603 * 119.99826 * 35.52754 * 17 16 15 19 19 O 1.42101 * 106.40084 * 306.86707 * 18 17 16 20 20 O 1.42096 * 106.40317 * 173.94623 * 18 17 16 21 21 C 1.76203 * 107.21774 * 60.40419 * 18 17 16 22 22 C 1.34672 * 125.98709 * 149.99833 * 21 18 17 23 23 N 1.36884 * 106.81635 * 179.73322 * 22 21 18 24 24 H 0.96996 * 126.39816 * 179.97438 * 23 22 21 25 25 C 1.35041 * 107.20276 * 0.02562 * 23 22 21 26 26 N 1.30502 * 108.70415 * 359.97438 * 25 23 22 27 27 H 0.96997 * 120.00180 * 359.97438 * 1 2 3 28 28 H 1.07999 * 120.00929 * 0.02562 * 11 10 9 29 29 H 1.07997 * 119.90779 * 179.97438 * 14 12 11 30 30 H 1.08000 * 119.99291 * 180.31816 * 15 14 12 31 31 H 0.96998 * 120.00119 * 215.51774 * 17 16 15 32 32 H 1.08001 * 126.58910 * 359.72235 * 22 21 18 33 33 H 1.08009 * 125.64424 * 179.97438 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3157 0.0000 0.0000 3 14 2.2498 1.6177 0.0000 4 1 2.4972 2.0464 -1.4001 5 1 1.4472 2.6526 0.7000 6 1 3.5473 1.4402 0.7001 7 6 2.0090 -1.2006 0.0005 8 1 1.4690 -2.1359 0.0005 9 8 3.3569 -1.2005 0.0000 10 6 3.9735 -2.4057 0.1072 11 6 3.2248 -3.5735 0.0942 12 6 3.8552 -4.8002 0.2041 13 9 3.1250 -5.9367 0.1907 14 6 5.2335 -4.8658 0.3278 15 6 5.9863 -3.7067 0.3353 16 6 5.3614 -2.4727 0.2314 17 7 6.1217 -1.2981 0.2453 18 16 7.6157 -1.2704 -0.4684 19 8 8.3464 -2.3548 0.0880 20 8 8.0621 0.0774 -0.4127 21 6 7.3861 -1.6485 -2.1740 22 6 8.1504 -1.2088 -3.1919 23 7 7.6276 -1.7424 -4.3389 24 1 7.9606 -1.6083 -5.2400 25 6 6.5610 -2.4897 -3.9818 26 7 6.4227 -2.4290 -2.6855 27 1 -0.4850 0.8400 0.0004 28 1 2.1502 -3.5251 -0.0017 29 1 5.7213 -5.8255 0.4137 30 1 7.0610 -3.7616 0.4268 31 1 5.7736 -0.5001 0.6729 32 1 9.0104 -0.5597 -3.1175 33 1 5.9274 -3.0455 -4.6571 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000122342064.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:37:17 Heat of formation + Delta-G solvation = -47.968116 kcal Electronic energy + Delta-G solvation = -25803.839769 eV Core-core repulsion = 21680.702447 eV Total energy + Delta-G solvation = -4123.137322 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 327.052 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -48.22765 -42.23771 -39.41525 -37.27241 -36.58400 -35.81706 -34.25470 -32.84752 -32.44492 -29.99115 -29.51882 -27.95088 -25.36922 -22.81417 -22.23462 -22.10073 -21.58689 -19.50644 -18.93840 -18.26052 -17.98434 -17.20360 -16.82834 -16.16826 -15.57448 -15.38265 -15.12556 -14.96489 -14.86265 -14.43928 -14.23997 -14.06558 -13.83669 -13.52596 -13.39494 -12.72501 -12.38634 -12.24083 -12.10333 -11.93415 -11.61595 -11.57555 -11.32510 -10.94178 -10.55385 -10.52096 -10.37323 -10.29851 -10.04793 -9.59401 -9.13800 -8.94873 -7.95646 -7.24422 -6.49143 -4.15579 0.50116 1.48208 1.90697 2.10430 2.60244 2.79610 2.99966 3.17508 3.20610 3.32409 3.70013 4.15598 4.27948 4.42344 4.63321 4.73553 4.77147 5.00061 5.02362 5.07100 5.42302 5.50183 5.67627 5.78765 6.02665 6.04628 6.47857 6.59503 6.83425 6.91546 6.96139 7.01186 7.29529 7.53206 7.61690 7.72469 7.93620 8.84763 9.42751 10.57934 Molecular weight = 327.05amu Principal moments of inertia in cm(-1) A = 0.010143 B = 0.006204 C = 0.004858 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2759.825055 B = 4512.410932 C = 5762.843835 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.874 5.874 2 C 0.066 3.934 3 Si 0.901 3.099 4 H -0.274 1.274 5 H -0.281 1.281 6 H -0.257 1.257 7 C -0.389 4.389 8 H 0.109 0.891 9 O -0.205 6.205 10 C 0.178 3.822 11 C -0.242 4.242 12 C 0.129 3.871 13 F -0.150 7.150 14 C -0.209 4.209 15 C -0.088 4.088 16 C 0.085 3.915 17 N -1.029 6.029 18 S 2.727 3.273 19 O -0.950 6.950 20 O -0.962 6.962 21 C -0.550 4.550 22 C 0.063 3.937 23 N -0.562 5.562 24 H 0.425 0.575 25 C 0.189 3.811 26 N -0.401 5.401 27 H 0.281 0.719 28 H 0.147 0.853 29 H 0.125 0.875 30 H 0.159 0.841 31 H 0.428 0.572 32 H 0.193 0.807 33 H 0.218 0.782 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.165 -3.102 -7.885 17.372 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.511 5.511 2 C -0.138 4.138 3 Si 0.727 3.273 4 H -0.199 1.199 5 H -0.207 1.207 6 H -0.181 1.181 7 C -0.464 4.464 8 H 0.126 0.874 9 O -0.109 6.109 10 C 0.122 3.878 11 C -0.263 4.263 12 C 0.109 3.891 13 F -0.129 7.129 14 C -0.229 4.229 15 C -0.110 4.110 16 C -0.011 4.011 17 N -0.781 5.781 18 S 2.813 3.187 19 O -0.940 6.940 20 O -0.952 6.952 21 C -0.762 4.762 22 C -0.080 4.080 23 N -0.163 5.163 24 H 0.264 0.736 25 C -0.098 4.098 26 N -0.118 5.118 27 H 0.091 0.909 28 H 0.165 0.835 29 H 0.143 0.857 30 H 0.176 0.824 31 H 0.265 0.735 32 H 0.210 0.790 33 H 0.234 0.766 Dipole moment (debyes) X Y Z Total from point charges 15.259 -3.083 -7.099 17.110 hybrid contribution -0.011 1.152 -1.668 2.028 sum 15.248 -1.931 -8.767 17.695 Atomic orbital electron populations 1.69647 1.05550 1.28612 1.47269 1.24452 0.95011 0.98760 0.95555 0.86251 0.80455 0.81570 0.79051 1.19900 1.20651 1.18112 1.20777 0.76614 0.96777 1.52276 0.87374 1.83546 1.22805 1.24917 1.79640 1.18527 0.89882 0.85553 0.93871 1.20985 1.02004 0.90188 1.13152 1.17454 0.89076 0.81236 1.01354 1.91420 1.77941 1.49475 1.94057 1.20406 0.91426 0.98751 1.12347 1.21174 1.01436 0.89607 0.98737 1.16423 0.87904 0.84973 1.11821 1.52531 1.37770 1.19143 1.68675 1.01275 0.71987 0.73048 0.72344 1.93532 1.69456 1.55326 1.75653 1.93591 1.79592 1.35320 1.86684 1.33336 1.05157 1.13791 1.23900 1.22573 1.00557 0.99963 0.84883 1.43661 1.24857 1.37885 1.09942 0.73638 1.25483 0.91522 0.98922 0.93872 1.70517 1.19449 1.14838 1.06977 0.90917 0.83518 0.85680 0.82391 0.73458 0.79044 0.76590 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -24.52 13.96 55.48 0.77 -23.74 16 2 C 0.07 1.80 5.49 -17.51 -0.10 1.70 16 3 Si 0.90 20.92 28.62 -169.99 -4.86 16.06 16 4 H -0.27 -6.30 7.11 56.52 0.40 -5.89 16 5 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 6 H -0.26 -5.80 7.11 56.52 0.40 -5.40 16 7 C -0.39 -10.49 9.94 30.88 0.31 -10.18 16 8 H 0.11 3.00 5.44 -52.49 -0.29 2.72 16 9 O -0.20 -5.06 8.16 -0.01 0.00 -5.06 16 10 C 0.18 3.94 6.67 -38.93 -0.26 3.68 16 11 C -0.24 -5.22 9.14 -39.36 -0.36 -5.58 16 12 C 0.13 2.50 7.29 -39.43 -0.29 2.21 16 13 F -0.15 -2.83 17.26 2.25 0.04 -2.79 16 14 C -0.21 -3.68 10.02 -39.48 -0.40 -4.08 16 15 C -0.09 -1.59 9.26 -39.42 -0.37 -1.95 16 16 C 0.09 1.66 5.66 -83.52 -0.47 1.19 16 17 N -1.03 -18.17 5.64 32.54 0.18 -17.99 16 18 S 2.73 43.22 5.65 -107.50 -0.61 42.61 16 19 O -0.95 -16.02 14.98 -57.17 -0.86 -16.88 16 20 O -0.96 -16.17 17.95 -57.17 -1.03 -17.20 16 21 C -0.55 -8.09 6.99 -17.81 -0.12 -8.22 16 22 C 0.06 0.67 11.89 -16.56 -0.20 0.47 16 23 N -0.56 -4.60 6.15 -14.03 -0.09 -4.68 16 24 H 0.42 1.53 8.96 -40.82 -0.37 1.16 16 25 C 0.19 2.08 13.04 -90.38 -1.18 0.90 16 26 N -0.40 -6.23 10.58 -13.86 -0.15 -6.37 16 27 H 0.28 7.29 8.31 -40.82 -0.34 6.95 16 28 H 0.15 3.31 5.64 -52.49 -0.30 3.02 16 29 H 0.13 1.87 8.06 -52.49 -0.42 1.45 16 30 H 0.16 2.71 5.17 -52.49 -0.27 2.44 16 31 H 0.43 7.26 8.72 -34.47 -0.30 6.96 16 32 H 0.19 1.35 8.06 -52.49 -0.42 0.93 16 33 H 0.22 1.54 8.06 -52.48 -0.42 1.12 16 LS Contribution 312.09 15.07 4.70 4.70 Total: -1.00 -34.43 312.09 -7.24 -41.67 By element: Atomic # 1 Polarization: 11.45 SS G_CDS: -1.92 Total: 9.52 kcal Atomic # 6 Polarization: -16.42 SS G_CDS: -3.43 Total: -19.85 kcal Atomic # 7 Polarization: -53.51 SS G_CDS: 0.73 Total: -52.79 kcal Atomic # 8 Polarization: -37.25 SS G_CDS: -1.88 Total: -39.14 kcal Atomic # 9 Polarization: -2.83 SS G_CDS: 0.04 Total: -2.79 kcal Atomic # 14 Polarization: 20.92 SS G_CDS: -4.86 Total: 16.06 kcal Atomic # 16 Polarization: 43.22 SS G_CDS: -0.61 Total: 42.61 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -34.43 -7.24 -41.67 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000122342064.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.295 kcal (2) G-P(sol) polarization free energy of solvation -34.434 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.729 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.239 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.673 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.968 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds