Wall clock time and date at job start Tue Mar 31 2020 14:37:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31575 * 1 3 3 Si 1.86803 * 120.00285 * 2 1 4 4 H 1.48501 * 109.46937 * 270.00471 * 3 2 1 5 5 H 1.48504 * 109.46545 * 29.99818 * 3 2 1 6 6 H 1.48493 * 109.47358 * 149.99710 * 3 2 1 7 7 C 1.38636 * 120.00289 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99759 * 0.02562 * 7 2 1 9 9 O 1.34793 * 120.00074 * 179.97438 * 7 2 1 10 10 C 1.35802 * 117.00079 * 174.94418 * 9 7 2 11 11 C 1.38723 * 120.08302 * 5.59103 * 10 9 7 12 12 C 1.38354 * 119.98132 * 180.02562 * 11 10 9 13 13 F 1.35097 * 119.92423 * 180.02562 * 12 11 10 14 14 C 1.38536 * 120.15596 * 0.02562 * 12 11 10 15 15 C 1.38208 * 120.17684 * 359.67896 * 14 12 11 16 16 C 1.38716 * 120.01892 * 0.59614 * 15 14 12 17 17 N 1.39925 * 120.08383 * 179.69652 * 16 15 14 18 18 S 1.65603 * 119.99826 * 35.52754 * 17 16 15 19 19 O 1.42101 * 106.40084 * 306.86707 * 18 17 16 20 20 O 1.42096 * 106.40317 * 173.94623 * 18 17 16 21 21 C 1.76203 * 107.21774 * 60.40419 * 18 17 16 22 22 C 1.34672 * 125.98709 * 149.99833 * 21 18 17 23 23 N 1.36884 * 106.81635 * 179.73322 * 22 21 18 24 24 H 0.96996 * 126.39816 * 179.97438 * 23 22 21 25 25 C 1.35041 * 107.20276 * 0.02562 * 23 22 21 26 26 N 1.30502 * 108.70415 * 359.97438 * 25 23 22 27 27 H 0.96997 * 120.00180 * 359.97438 * 1 2 3 28 28 H 1.07999 * 120.00929 * 0.02562 * 11 10 9 29 29 H 1.07997 * 119.90779 * 179.97438 * 14 12 11 30 30 H 1.08000 * 119.99291 * 180.31816 * 15 14 12 31 31 H 0.96998 * 120.00119 * 215.51774 * 17 16 15 32 32 H 1.08001 * 126.58910 * 359.72235 * 22 21 18 33 33 H 1.08009 * 125.64424 * 179.97438 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3157 0.0000 0.0000 3 14 2.2498 1.6177 0.0000 4 1 2.4972 2.0464 -1.4001 5 1 1.4472 2.6526 0.7000 6 1 3.5473 1.4402 0.7001 7 6 2.0090 -1.2006 0.0005 8 1 1.4690 -2.1359 0.0005 9 8 3.3569 -1.2005 0.0000 10 6 3.9735 -2.4057 0.1072 11 6 3.2248 -3.5735 0.0942 12 6 3.8552 -4.8002 0.2041 13 9 3.1250 -5.9367 0.1907 14 6 5.2335 -4.8658 0.3278 15 6 5.9863 -3.7067 0.3353 16 6 5.3614 -2.4727 0.2314 17 7 6.1217 -1.2981 0.2453 18 16 7.6157 -1.2704 -0.4684 19 8 8.3464 -2.3548 0.0880 20 8 8.0621 0.0774 -0.4127 21 6 7.3861 -1.6485 -2.1740 22 6 8.1504 -1.2088 -3.1919 23 7 7.6276 -1.7424 -4.3389 24 1 7.9606 -1.6083 -5.2400 25 6 6.5610 -2.4897 -3.9818 26 7 6.4227 -2.4290 -2.6855 27 1 -0.4850 0.8400 0.0004 28 1 2.1502 -3.5251 -0.0017 29 1 5.7213 -5.8255 0.4137 30 1 7.0610 -3.7616 0.4268 31 1 5.7736 -0.5001 0.6729 32 1 9.0104 -0.5597 -3.1175 33 1 5.9274 -3.0455 -4.6571 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000122342064.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:37:17 Heat of formation + Delta-G solvation = -74.152044 kcal Electronic energy + Delta-G solvation = -25804.975189 eV Core-core repulsion = 21680.702447 eV Total energy + Delta-G solvation = -4124.272742 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 327.052 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -49.78238 -43.07908 -41.09290 -38.72926 -38.10625 -37.10171 -35.73501 -34.44304 -33.70432 -31.16080 -30.87455 -29.55015 -27.27278 -24.00015 -23.58579 -23.19471 -23.01678 -20.53750 -20.17177 -19.95216 -19.64014 -18.56116 -18.32352 -17.30307 -17.15904 -16.69245 -16.62139 -16.53239 -15.89461 -15.84352 -15.58596 -15.38702 -15.20588 -15.01245 -14.94138 -14.35931 -14.10350 -13.88170 -13.46685 -13.38982 -13.09412 -12.88146 -12.77329 -12.66118 -12.16578 -12.06893 -11.69795 -11.47556 -11.37009 -11.21062 -10.91934 -10.04136 -9.59516 -8.85621 -8.50148 -6.22124 -0.71746 0.31267 0.49935 0.63588 1.32530 1.35468 1.50631 1.60218 1.83555 2.12696 2.26291 2.51958 2.63424 2.90433 3.02797 3.38398 3.44266 3.82184 3.97814 4.04891 4.12410 4.21266 4.25907 4.38056 4.67019 4.89987 5.10605 5.21368 5.23925 5.30027 5.34351 5.67740 5.80884 5.89972 6.14520 6.34710 6.78476 6.83226 7.51197 8.60915 Molecular weight = 327.05amu Principal moments of inertia in cm(-1) A = 0.010143 B = 0.006204 C = 0.004858 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2759.825055 B = 4512.410932 C = 5762.843835 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C 0.017 3.983 3 Si 0.957 3.043 4 H -0.269 1.269 5 H -0.270 1.270 6 H -0.250 1.250 7 C -0.396 4.396 8 H 0.083 0.917 9 O -0.223 6.223 10 C 0.151 3.849 11 C -0.252 4.252 12 C 0.120 3.880 13 F -0.146 7.146 14 C -0.179 4.179 15 C -0.088 4.088 16 C 0.104 3.896 17 N -1.039 6.039 18 S 2.745 3.255 19 O -0.964 6.964 20 O -0.973 6.973 21 C -0.592 4.592 22 C 0.083 3.917 23 N -0.539 5.539 24 H 0.449 0.551 25 C 0.193 3.807 26 N -0.457 5.457 27 H 0.285 0.715 28 H 0.125 0.875 29 H 0.163 0.837 30 H 0.175 0.825 31 H 0.428 0.572 32 H 0.228 0.772 33 H 0.249 0.751 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.284 -3.326 -9.264 20.765 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.559 5.559 2 C -0.182 4.182 3 Si 0.779 3.221 4 H -0.194 1.194 5 H -0.195 1.195 6 H -0.174 1.174 7 C -0.473 4.473 8 H 0.101 0.899 9 O -0.129 6.129 10 C 0.097 3.903 11 C -0.273 4.273 12 C 0.100 3.900 13 F -0.125 7.125 14 C -0.199 4.199 15 C -0.110 4.110 16 C 0.007 3.993 17 N -0.789 5.789 18 S 2.835 3.165 19 O -0.953 6.953 20 O -0.963 6.963 21 C -0.806 4.806 22 C -0.062 4.062 23 N -0.142 5.142 24 H 0.292 0.708 25 C -0.095 4.095 26 N -0.175 5.175 27 H 0.094 0.906 28 H 0.143 0.857 29 H 0.181 0.819 30 H 0.192 0.808 31 H 0.265 0.735 32 H 0.245 0.755 33 H 0.264 0.736 Dipole moment (debyes) X Y Z Total from point charges 18.414 -3.336 -8.464 20.539 hybrid contribution -0.765 0.981 -1.341 1.829 sum 17.649 -2.355 -9.805 20.327 Atomic orbital electron populations 1.69730 1.06909 1.29593 1.49646 1.25186 0.95749 1.01858 0.95437 0.85412 0.79570 0.77790 0.79317 1.19432 1.19465 1.17359 1.20679 0.77866 0.96159 1.52547 0.89925 1.83505 1.21242 1.26002 1.82128 1.18861 0.91021 0.85065 0.95318 1.20970 1.01197 0.91437 1.13660 1.17457 0.89840 0.80565 1.02127 1.91429 1.78059 1.48952 1.94081 1.20824 0.90373 1.00273 1.08428 1.21433 1.02188 0.89062 0.98275 1.16535 0.86966 0.86253 1.09550 1.52716 1.37869 1.18673 1.69665 1.00426 0.70868 0.72507 0.72676 1.93495 1.69501 1.55588 1.76760 1.93574 1.79512 1.35926 1.87275 1.32867 1.07417 1.16703 1.23566 1.23131 1.00152 0.98455 0.84424 1.43596 1.23627 1.36294 1.10703 0.70762 1.26061 0.91937 0.98425 0.93100 1.70410 1.20933 1.16753 1.09403 0.90558 0.85714 0.81937 0.80804 0.73452 0.75523 0.73557 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -53.66 13.96 21.61 0.30 -53.36 16 2 C 0.02 0.95 5.49 84.83 0.47 1.41 16 3 Si 0.96 43.68 28.62 68.60 1.96 45.64 16 4 H -0.27 -11.96 7.11 99.48 0.71 -11.25 16 5 H -0.27 -11.66 7.11 99.48 0.71 -10.96 16 6 H -0.25 -10.95 7.11 99.48 0.71 -10.25 16 7 C -0.40 -22.44 9.94 67.91 0.68 -21.77 16 8 H 0.08 4.95 5.44 -2.91 -0.02 4.93 16 9 O -0.22 -11.35 8.16 -22.94 -0.19 -11.54 16 10 C 0.15 6.83 6.67 22.69 0.15 6.98 16 11 C -0.25 -11.17 9.14 22.41 0.20 -10.97 16 12 C 0.12 4.57 7.29 22.37 0.16 4.74 16 13 F -0.15 -5.39 17.26 44.97 0.78 -4.61 16 14 C -0.18 -5.85 10.02 22.33 0.22 -5.63 16 15 C -0.09 -3.01 9.26 22.38 0.21 -2.81 16 16 C 0.10 3.99 5.66 38.27 0.22 4.21 16 17 N -1.04 -36.07 5.64 -50.97 -0.29 -36.36 16 18 S 2.75 82.87 5.65 -56.49 -0.32 82.55 16 19 O -0.96 -30.71 14.98 -128.00 -1.92 -32.62 16 20 O -0.97 -31.13 17.95 -128.00 -2.30 -33.43 16 21 C -0.59 -16.12 6.99 83.52 0.58 -15.53 16 22 C 0.08 1.48 11.89 83.09 0.99 2.47 16 23 N -0.54 -6.70 6.15 -198.29 -1.22 -7.92 16 24 H 0.45 1.19 8.96 -92.71 -0.83 0.36 16 25 C 0.19 3.66 13.04 180.26 2.35 6.02 16 26 N -0.46 -13.33 10.58 -197.77 -2.09 -15.43 16 27 H 0.28 15.31 8.31 -92.71 -0.77 14.54 16 28 H 0.13 6.06 5.64 -2.91 -0.02 6.04 16 29 H 0.16 4.15 8.06 -2.91 -0.02 4.12 16 30 H 0.17 5.50 5.17 -2.91 -0.02 5.49 16 31 H 0.43 14.52 8.72 -96.75 -0.84 13.67 16 32 H 0.23 2.18 8.06 -2.91 -0.02 2.15 16 33 H 0.25 2.71 8.06 -2.91 -0.02 2.68 16 Total: -1.00 -76.93 312.09 0.51 -76.42 By element: Atomic # 1 Polarization: 21.98 SS G_CDS: -0.44 Total: 21.53 kcal Atomic # 6 Polarization: -37.11 SS G_CDS: 6.23 Total: -30.88 kcal Atomic # 7 Polarization: -109.77 SS G_CDS: -3.30 Total: -113.07 kcal Atomic # 8 Polarization: -73.19 SS G_CDS: -4.40 Total: -77.59 kcal Atomic # 9 Polarization: -5.39 SS G_CDS: 0.78 Total: -4.61 kcal Atomic # 14 Polarization: 43.68 SS G_CDS: 1.96 Total: 45.64 kcal Atomic # 16 Polarization: 82.87 SS G_CDS: -0.32 Total: 82.55 kcal Total: -76.93 0.51 -76.42 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000122342064.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.267 kcal (2) G-P(sol) polarization free energy of solvation -76.928 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.661 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.509 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.419 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.152 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds