Wall clock time and date at job start Tue Mar 31 2020 14:22:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08997 * 109.47078 * 2 1 4 4 C 1.50695 * 109.47506 * 239.99420 * 2 1 3 5 5 H 1.07998 * 120.00268 * 239.99841 * 4 2 1 6 6 C 1.37880 * 119.99916 * 60.00160 * 4 2 1 7 7 N 1.31518 * 119.99652 * 359.97438 * 6 4 2 8 8 Si 1.86797 * 120.00118 * 180.02562 * 6 4 2 9 9 H 1.48502 * 109.47206 * 59.99713 * 8 6 4 10 10 H 1.48499 * 109.47333 * 180.02562 * 8 6 4 11 11 H 1.48506 * 109.46735 * 299.99944 * 8 6 4 12 12 N 1.46506 * 109.46683 * 119.99391 * 2 1 3 13 13 C 1.46501 * 119.99789 * 60.00601 * 12 2 1 14 14 C 1.34779 * 119.99741 * 239.99967 * 12 2 1 15 15 O 1.21580 * 120.00009 * 0.02562 * 14 12 2 16 16 N 1.34773 * 119.99396 * 180.02562 * 14 12 2 17 17 C 1.39978 * 119.99551 * 184.64609 * 16 14 12 18 18 C 1.38891 * 120.48480 * 145.04362 * 17 16 14 19 19 N 1.31784 * 120.68906 * 179.97438 * 18 17 16 20 20 C 1.31881 * 121.80465 * 359.97438 * 19 18 17 21 21 C 1.38319 * 120.90142 * 0.02562 * 20 19 18 22 22 Br 1.89105 * 120.39160 * 180.02562 * 21 20 19 23 23 C 1.38635 * 119.21932 * 359.97438 * 21 20 19 24 24 H 1.08993 * 109.47292 * 300.00513 * 1 2 3 25 25 H 1.09000 * 109.46592 * 60.00851 * 1 2 3 26 26 H 1.08997 * 109.47078 * 180.02562 * 1 2 3 27 27 H 0.97004 * 119.99616 * 179.97438 * 7 6 4 28 28 H 1.09005 * 109.46484 * 269.99304 * 13 12 2 29 29 H 1.08995 * 109.47405 * 29.99419 * 13 12 2 30 30 H 1.08998 * 109.47202 * 150.00099 * 13 12 2 31 31 H 0.96995 * 120.00601 * 4.64637 * 16 14 12 32 32 H 1.08008 * 119.65582 * 359.97438 * 18 17 16 33 33 H 1.07993 * 119.54766 * 179.97438 * 20 19 18 34 34 H 1.08006 * 120.82065 * 180.02562 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0325 -0.7105 -1.2303 5 1 2.6534 -1.5885 -1.1312 6 6 1.6994 -0.2395 -2.4827 7 7 0.9429 0.8295 -2.6034 8 14 2.3216 -1.1206 -4.0078 9 1 1.8261 -2.5205 -4.0075 10 1 1.8273 -0.4203 -5.2204 11 1 3.8067 -1.1211 -4.0078 12 7 2.0183 -0.6905 1.1963 13 6 1.6644 -2.0931 1.4282 14 6 2.7931 -0.0354 2.0834 15 8 3.0865 1.1287 1.8911 16 7 3.2427 -0.6709 3.1837 17 6 3.9653 0.0345 4.1530 18 6 3.8303 -0.2790 5.4993 19 7 4.5091 0.3821 6.4152 20 6 5.3368 1.3583 6.0972 21 6 5.5248 1.7287 4.7779 22 35 6.7158 3.1302 4.3381 23 6 4.8307 1.0597 3.7816 24 1 -0.3633 0.5139 0.8899 25 1 -0.3632 0.5137 -0.8901 26 1 -0.3633 -1.0276 0.0005 27 1 0.7089 1.1610 -3.4845 28 1 0.7375 -2.1442 1.9995 29 1 1.5295 -2.5968 0.4711 30 1 2.4627 -2.5818 1.9866 31 1 3.0655 -1.6169 3.3039 32 1 3.1620 -1.0729 5.7987 33 1 5.8745 1.8761 6.8776 34 1 4.9582 1.3274 2.7430 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000126463050.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:22:24 Heat of formation + Delta-G solvation = 23.000549 kcal Electronic energy + Delta-G solvation = -19720.791964 eV Core-core repulsion = 16507.720987 eV Total energy + Delta-G solvation = -3213.070977 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 327.032 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.81036 -39.31170 -35.88748 -34.79025 -33.14445 -32.91226 -30.60645 -29.58771 -28.83729 -26.31654 -25.29034 -24.03754 -23.15757 -21.30196 -19.43918 -18.14178 -17.14673 -16.96129 -16.34909 -16.21797 -15.24653 -14.87884 -14.35291 -14.16804 -14.01609 -13.31886 -13.17247 -12.83934 -12.62483 -12.38637 -11.75514 -11.62780 -11.41967 -11.12254 -10.96661 -10.86911 -10.73323 -10.44600 -10.35056 -10.23144 -9.92242 -9.48024 -9.27264 -9.13182 -8.49734 -8.37179 -7.71246 -6.13800 -4.22473 0.76593 1.13742 1.46269 2.90634 3.23584 3.29600 3.30969 3.41870 3.77083 4.22987 4.34662 4.40265 4.69170 4.88090 5.02266 5.10454 5.17744 5.45581 5.78515 5.85509 6.05243 6.09536 6.18097 6.57283 6.71842 6.73760 6.90252 7.02808 7.33707 7.58416 7.68196 7.71400 7.96711 8.11804 8.45988 8.76440 9.00665 9.44294 10.91445 Molecular weight = 327.03amu Principal moments of inertia in cm(-1) A = 0.017732 B = 0.003498 C = 0.003097 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1578.660106 B = 8002.642241 C = 9040.110490 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.272 3.728 3 H 0.066 0.934 4 C -0.530 4.530 5 H 0.059 0.941 6 C 0.067 3.933 7 N -0.886 5.886 8 Si 0.900 3.100 9 H -0.277 1.277 10 H -0.286 1.286 11 H -0.277 1.277 12 N -0.599 5.599 13 C 0.082 3.918 14 C 0.695 3.305 15 O -0.577 6.577 16 N -0.689 5.689 17 C 0.140 3.860 18 C 0.077 3.923 19 N -0.456 5.456 20 C 0.099 3.901 21 C -0.123 4.123 22 Br -0.036 7.036 23 C -0.053 4.053 24 H 0.011 0.989 25 H 0.095 0.905 26 H 0.030 0.970 27 H 0.265 0.735 28 H 0.046 0.954 29 H 0.087 0.913 30 H 0.047 0.953 31 H 0.408 0.592 32 H 0.162 0.838 33 H 0.163 0.837 34 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.743 -1.956 15.685 17.601 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.172 3.828 3 H 0.084 0.916 4 C -0.569 4.569 5 H 0.077 0.923 6 C -0.136 4.136 7 N -0.524 5.524 8 Si 0.727 3.273 9 H -0.202 1.202 10 H -0.211 1.211 11 H -0.202 1.202 12 N -0.333 5.333 13 C -0.062 4.062 14 C 0.397 3.603 15 O -0.454 6.454 16 N -0.340 5.340 17 C 0.039 3.961 18 C -0.083 4.083 19 N -0.165 5.165 20 C -0.062 4.062 21 C -0.206 4.206 22 Br 0.049 6.951 23 C -0.083 4.083 24 H 0.030 0.970 25 H 0.113 0.887 26 H 0.049 0.951 27 H 0.075 0.925 28 H 0.064 0.936 29 H 0.106 0.894 30 H 0.065 0.935 31 H 0.246 0.754 32 H 0.180 0.820 33 H 0.180 0.820 34 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges 8.087 -0.722 15.971 17.916 hybrid contribution -0.039 -1.136 -1.664 2.016 sum 8.048 -1.858 14.306 16.519 Atomic orbital electron populations 1.22104 0.98034 0.99468 1.00929 1.18947 0.90791 0.94340 0.78711 0.91646 1.21260 1.32170 1.13208 0.90234 0.92273 1.24880 0.94853 0.94954 0.98953 1.69867 1.36032 1.22462 1.24010 0.86536 0.79244 0.79541 0.81943 1.20217 1.21112 1.20238 1.47654 1.50417 1.11610 1.23581 1.21590 0.98418 0.83292 1.02898 1.16017 0.79763 0.84986 0.79547 1.90882 1.62680 1.15498 1.76371 1.42920 1.57207 1.12860 1.20972 1.18577 0.92832 0.95351 0.89322 1.22709 0.98543 1.00203 0.86874 1.67750 1.06200 1.06354 1.36169 1.22654 0.96142 0.94127 0.93234 1.22865 1.01675 0.99308 0.96719 1.96731 1.59131 1.44921 1.94319 1.21923 0.90953 0.93883 1.01553 0.96961 0.88658 0.95109 0.92514 0.93550 0.89398 0.93488 0.75431 0.82035 0.82014 0.81699 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.39 8.97 37.16 0.33 -3.05 16 2 C 0.27 6.67 2.64 -69.08 -0.18 6.49 16 3 H 0.07 1.88 6.90 -51.93 -0.36 1.52 16 4 C -0.53 -13.75 7.99 -34.44 -0.28 -14.02 16 5 H 0.06 1.50 7.33 -52.49 -0.38 1.11 16 6 C 0.07 1.76 5.30 -17.82 -0.09 1.66 16 7 N -0.89 -24.41 11.32 55.43 0.63 -23.79 16 8 Si 0.90 20.46 29.54 -169.99 -5.02 15.44 16 9 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 10 H -0.29 -6.48 7.11 56.52 0.40 -6.08 16 11 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 12 N -0.60 -11.99 2.75 -181.01 -0.50 -12.49 16 13 C 0.08 1.23 9.24 59.85 0.55 1.78 16 14 C 0.70 13.71 8.14 -86.92 -0.71 13.00 16 15 O -0.58 -13.59 13.15 5.30 0.07 -13.52 16 16 N -0.69 -10.06 5.23 -14.13 -0.07 -10.13 16 17 C 0.14 2.00 6.32 -83.54 -0.53 1.47 16 18 C 0.08 0.93 11.12 -17.33 -0.19 0.74 16 19 N -0.46 -5.80 10.35 -13.07 -0.14 -5.94 16 20 C 0.10 1.19 10.94 -17.50 -0.19 1.00 16 21 C -0.12 -1.66 6.24 -39.40 -0.25 -1.91 16 22 Br -0.04 -0.44 33.73 -68.01 -2.29 -2.73 16 23 C -0.05 -0.83 8.57 -39.07 -0.33 -1.17 16 24 H 0.01 0.25 8.14 -51.93 -0.42 -0.17 16 25 H 0.09 2.43 6.07 -51.93 -0.32 2.12 16 26 H 0.03 0.65 7.67 -51.93 -0.40 0.25 16 27 H 0.26 6.98 8.31 -40.82 -0.34 6.64 16 28 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 29 H 0.09 1.43 7.02 -51.93 -0.36 1.06 16 30 H 0.05 0.54 6.30 -51.93 -0.33 0.21 16 31 H 0.41 4.50 6.52 -40.82 -0.27 4.24 16 32 H 0.16 1.44 8.06 -52.48 -0.42 1.01 16 33 H 0.16 1.53 8.06 -52.49 -0.42 1.11 16 34 H 0.17 3.00 6.32 -52.48 -0.33 2.67 16 LS Contribution 307.70 15.07 4.64 4.64 Total: -1.00 -30.17 307.70 -8.13 -38.30 By element: Atomic # 1 Polarization: 7.79 SS G_CDS: -3.57 Total: 4.21 kcal Atomic # 6 Polarization: 7.86 SS G_CDS: -1.87 Total: 5.99 kcal Atomic # 7 Polarization: -52.26 SS G_CDS: -0.08 Total: -52.34 kcal Atomic # 8 Polarization: -13.59 SS G_CDS: 0.07 Total: -13.52 kcal Atomic # 14 Polarization: 20.46 SS G_CDS: -5.02 Total: 15.44 kcal Atomic # 35 Polarization: -0.44 SS G_CDS: -2.29 Total: -2.73 kcal Total LS contribution 4.64 Total: 4.64 kcal Total: -30.17 -8.13 -38.30 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000126463050.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.302 kcal (2) G-P(sol) polarization free energy of solvation -30.175 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.127 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.126 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.301 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.001 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds