Wall clock time and date at job start Tue Mar 31 2020 15:06:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30833 * 1 3 3 Si 1.86799 * 120.00382 * 2 1 4 4 H 1.48495 * 109.47215 * 180.02562 * 3 2 1 5 5 H 1.48508 * 109.46741 * 300.00201 * 3 2 1 6 6 H 1.48500 * 109.46962 * 59.99470 * 3 2 1 7 7 C 1.39927 * 119.99663 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99882 * 162.60908 * 7 2 1 9 9 C 1.41430 * 119.99977 * 342.61661 * 7 2 1 10 10 C 1.40826 * 120.17361 * 154.89879 * 9 7 2 11 11 C 1.37713 * 120.04850 * 180.02562 * 10 9 7 12 12 C 1.38370 * 120.40811 * 359.74221 * 11 10 9 13 13 C 1.39948 * 120.35339 * 0.51477 * 12 11 10 14 14 C 1.47768 * 120.03052 * 179.76128 * 13 12 11 15 15 N 1.31358 * 126.28158 * 179.70016 * 14 13 12 16 16 N 1.28656 * 109.39203 * 180.02562 * 15 14 13 17 17 C 1.31390 * 109.39622 * 359.97438 * 16 15 14 18 18 C 1.47729 * 126.28920 * 180.02562 * 17 16 15 19 19 C 1.40087 * 120.54915 * 0.02562 * 18 17 16 20 20 C 1.38271 * 118.30538 * 180.02562 * 19 18 17 21 21 C 1.38533 * 119.29476 * 0.02562 * 20 19 18 22 22 Cl 1.73601 * 119.46735 * 179.97438 * 21 20 19 23 23 N 1.32008 * 121.06204 * 0.25619 * 21 20 19 24 24 C 1.31712 * 121.86232 * 359.46697 * 23 21 20 25 25 O 1.34854 * 107.42319 * 0.26638 * 17 16 15 26 26 C 1.39062 * 119.93673 * 359.48954 * 13 12 11 27 27 H 0.97003 * 120.00052 * 359.97438 * 1 2 3 28 28 H 1.08004 * 119.97346 * 0.04495 * 10 9 7 29 29 H 1.07995 * 119.79556 * 180.02562 * 11 10 9 30 30 H 1.08003 * 119.81907 * 180.25143 * 12 11 10 31 31 H 1.08007 * 120.84707 * 0.05148 * 19 18 17 32 32 H 1.08000 * 120.35144 * 180.02562 * 20 19 18 33 33 H 1.07994 * 119.71768 * 180.26878 * 24 23 21 34 34 H 1.08000 * 120.19341 * 180.27625 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2424 1.6177 0.0000 4 1 3.7024 1.3462 -0.0006 5 1 1.8836 2.3964 -1.2126 6 1 1.8836 2.3964 1.2124 7 6 2.0079 -1.2118 0.0005 8 1 3.0508 -1.2334 -0.2790 9 6 1.3491 -2.4085 0.3670 10 6 1.8187 -3.6487 -0.1069 11 6 1.1750 -4.8123 0.2512 12 6 0.0683 -4.7736 1.0809 13 6 -0.4160 -3.5501 1.5573 14 6 -1.6015 -3.5167 2.4388 15 7 -2.1540 -2.4441 2.9581 16 7 -3.1664 -2.7887 3.6733 17 6 -3.3008 -4.0953 3.6384 18 6 -4.3410 -4.8860 4.3277 19 6 -5.3135 -4.2528 5.1124 20 6 -6.2650 -5.0379 5.7372 21 6 -6.2262 -6.4124 5.5692 22 17 -7.4182 -7.4024 6.3520 23 7 -5.2942 -6.9820 4.8278 24 6 -4.3703 -6.2761 4.2090 25 8 -2.3114 -4.5824 2.8623 26 6 0.2229 -2.3662 1.2049 27 1 -0.4850 0.8401 0.0004 28 1 2.6846 -3.6873 -0.7513 29 1 1.5388 -5.7611 -0.1142 30 1 -0.4268 -5.6923 1.3590 31 1 -5.3202 -3.1788 5.2262 32 1 -7.0302 -4.5843 6.3496 33 1 -3.6266 -6.7777 3.6076 34 1 -0.1447 -1.4201 1.5738 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000139998807.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:06:29 Heat of formation + Delta-G solvation = 67.473354 kcal Electronic energy + Delta-G solvation = -22950.929859 eV Core-core repulsion = 19261.523973 eV Total energy + Delta-G solvation = -3689.405886 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 327.052 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -45.21943 -41.43090 -39.49293 -37.84772 -37.36728 -35.72885 -34.83249 -33.51910 -32.55174 -31.58736 -29.96333 -27.36176 -26.07484 -25.67699 -24.50809 -23.51272 -22.53993 -22.20491 -19.59025 -19.03887 -18.52019 -18.29694 -17.86285 -17.42600 -17.01305 -16.53529 -16.19240 -15.75157 -15.51041 -15.18596 -14.65025 -14.54519 -14.27510 -13.75723 -13.74302 -13.64500 -13.24921 -13.09621 -13.00611 -12.83964 -12.66466 -12.50600 -12.36947 -12.20640 -11.81344 -11.67922 -11.55152 -11.16999 -10.98647 -10.96931 -10.16110 -9.47881 -9.21524 -8.68190 -6.40518 -1.08331 -0.15692 -0.08055 0.55885 0.87679 0.91537 0.96633 1.39645 1.41905 1.55510 1.57751 2.19958 2.34797 2.50468 2.68518 3.15626 3.19547 3.46587 3.55780 3.60365 3.67521 4.01927 4.16227 4.23195 4.42373 4.44695 4.53544 4.62776 4.79727 4.86808 5.04741 5.09330 5.14121 5.28417 5.42384 5.77173 5.89951 6.00008 6.21080 6.32617 6.51672 6.84977 6.86331 7.07731 8.28225 Molecular weight = 327.05amu Principal moments of inertia in cm(-1) A = 0.025707 B = 0.002406 C = 0.002215 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1088.917620 B =11633.866095 C =12640.424542 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.820 5.820 2 C 0.033 3.967 3 Si 0.981 3.019 4 H -0.252 1.252 5 H -0.266 1.266 6 H -0.270 1.270 7 C -0.488 4.488 8 H 0.088 0.912 9 C 0.072 3.928 10 C -0.208 4.208 11 C -0.088 4.088 12 C -0.203 4.203 13 C -0.040 4.040 14 C 0.247 3.753 15 N -0.313 5.313 16 N -0.285 5.285 17 C 0.192 3.808 18 C -0.075 4.075 19 C -0.008 4.008 20 C -0.135 4.135 21 C 0.181 3.819 22 Cl -0.011 7.011 23 N -0.491 5.491 24 C 0.160 3.840 25 O -0.213 6.213 26 C -0.126 4.126 27 H 0.289 0.711 28 H 0.116 0.884 29 H 0.142 0.858 30 H 0.126 0.874 31 H 0.173 0.827 32 H 0.194 0.806 33 H 0.184 0.816 34 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.496 -9.500 10.033 17.974 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.445 5.445 2 C -0.183 4.183 3 Si 0.801 3.199 4 H -0.175 1.175 5 H -0.191 1.191 6 H -0.195 1.195 7 C -0.517 4.517 8 H 0.106 0.894 9 C 0.070 3.930 10 C -0.228 4.228 11 C -0.106 4.106 12 C -0.224 4.224 13 C -0.042 4.042 14 C 0.041 3.959 15 N -0.160 5.160 16 N -0.132 5.132 17 C -0.016 4.016 18 C -0.080 4.080 19 C -0.035 4.035 20 C -0.156 4.156 21 C 0.017 3.983 22 Cl 0.018 6.982 23 N -0.202 5.202 24 C 0.001 3.999 25 O -0.093 6.093 26 C -0.147 4.147 27 H 0.100 0.900 28 H 0.134 0.866 29 H 0.160 0.840 30 H 0.144 0.856 31 H 0.191 0.809 32 H 0.211 0.789 33 H 0.201 0.799 34 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -12.048 -9.071 10.311 18.269 hybrid contribution 0.419 0.469 -0.363 0.726 sum -11.628 -8.602 9.948 17.555 Atomic orbital electron populations 1.69854 1.09110 1.30815 1.34732 1.26809 0.95418 1.04816 0.91270 0.85167 0.79719 0.76219 0.78746 1.17485 1.19078 1.19495 1.19883 0.98558 0.91781 1.41450 0.89375 1.17881 0.91400 0.94053 0.89661 1.21496 1.03799 0.92514 1.05004 1.20877 0.94730 0.98202 0.96757 1.20763 1.01167 0.94769 1.05692 1.17395 0.91145 0.96435 0.99275 1.26092 0.94687 0.79063 0.96060 1.74847 1.05401 1.24808 1.10931 1.74580 1.12337 1.09796 1.16508 1.25439 0.91121 0.90147 0.94910 1.18354 0.94407 0.93497 1.01716 1.21891 0.89262 1.02715 0.89605 1.22119 1.01021 0.90843 1.01573 1.22270 0.91740 0.90079 0.94210 1.98435 1.51845 1.71075 1.76833 1.67143 1.03480 1.40786 1.08771 1.23009 0.94488 0.88643 0.93788 1.84862 1.35024 1.37605 1.51849 1.21399 0.98368 0.95610 0.99372 0.90041 0.86555 0.84037 0.85620 0.80926 0.78933 0.79867 0.86813 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -42.96 10.97 21.82 0.24 -42.72 16 2 C 0.03 1.61 5.14 85.25 0.44 2.05 16 3 Si 0.98 37.52 29.59 68.60 2.03 39.55 16 4 H -0.25 -9.20 7.11 99.48 0.71 -8.49 16 5 H -0.27 -9.76 7.11 99.48 0.71 -9.06 16 6 H -0.27 -10.23 7.11 99.48 0.71 -9.52 16 7 C -0.49 -24.96 9.05 23.47 0.21 -24.75 16 8 H 0.09 4.25 7.90 -2.91 -0.02 4.23 16 9 C 0.07 3.71 5.57 -21.32 -0.12 3.59 16 10 C -0.21 -9.20 9.78 22.78 0.22 -8.97 16 11 C -0.09 -3.39 10.01 22.18 0.22 -3.17 16 12 C -0.20 -8.20 9.73 22.72 0.22 -7.98 16 13 C -0.04 -1.87 5.87 -20.15 -0.12 -1.99 16 14 C 0.25 10.77 7.98 87.29 0.70 11.46 16 15 N -0.31 -14.26 11.89 -166.16 -1.98 -16.24 16 16 N -0.28 -10.98 11.98 -166.18 -1.99 -12.97 16 17 C 0.19 6.27 8.00 87.27 0.70 6.97 16 18 C -0.08 -1.78 5.89 -20.00 -0.12 -1.90 16 19 C -0.01 -0.14 9.83 22.73 0.22 0.08 16 20 C -0.14 -1.83 9.86 22.35 0.22 -1.61 16 21 C 0.18 3.17 7.27 84.74 0.62 3.79 16 22 Cl -0.01 -0.16 29.10 -2.72 -0.08 -0.24 16 23 N -0.49 -10.48 10.32 -185.57 -1.92 -12.40 16 24 C 0.16 3.44 10.90 85.03 0.93 4.37 16 25 O -0.21 -7.75 10.46 -13.60 -0.14 -7.89 16 26 C -0.13 -6.59 8.33 23.00 0.19 -6.39 16 27 H 0.29 13.91 8.30 -92.71 -0.77 13.14 16 28 H 0.12 4.67 8.06 -2.91 -0.02 4.64 16 29 H 0.14 4.26 8.06 -2.91 -0.02 4.24 16 30 H 0.13 4.32 7.91 -2.91 -0.02 4.30 16 31 H 0.17 2.72 7.94 -2.91 -0.02 2.70 16 32 H 0.19 1.19 8.06 -2.91 -0.02 1.16 16 33 H 0.18 3.50 7.94 -2.91 -0.02 3.48 16 34 H 0.11 6.43 5.98 -2.91 -0.02 6.42 16 Total: -1.00 -61.99 328.98 1.87 -60.12 By element: Atomic # 1 Polarization: 16.06 SS G_CDS: 1.17 Total: 17.23 kcal Atomic # 6 Polarization: -28.97 SS G_CDS: 4.53 Total: -24.44 kcal Atomic # 7 Polarization: -78.69 SS G_CDS: -5.64 Total: -84.33 kcal Atomic # 8 Polarization: -7.75 SS G_CDS: -0.14 Total: -7.89 kcal Atomic # 14 Polarization: 37.52 SS G_CDS: 2.03 Total: 39.55 kcal Atomic # 17 Polarization: -0.16 SS G_CDS: -0.08 Total: -0.24 kcal Total: -61.99 1.87 -60.12 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000139998807.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 127.590 kcal (2) G-P(sol) polarization free energy of solvation -61.988 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.601 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.872 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.116 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.473 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds