Wall clock time and date at job start Tue Mar 31 2020 15:12:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86802 * 119.99832 * 2 1 4 4 H 1.48492 * 109.47291 * 180.02562 * 3 2 1 5 5 H 1.48495 * 109.47212 * 300.00458 * 3 2 1 6 6 H 1.48504 * 109.47055 * 60.00322 * 3 2 1 7 7 C 1.37873 * 120.00477 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00490 * 179.97438 * 7 2 1 9 9 C 1.50703 * 120.00123 * 359.97438 * 7 2 1 10 10 C 1.52997 * 109.47231 * 179.97438 * 9 7 2 11 11 H 1.09001 * 109.47492 * 305.00026 * 10 9 7 12 12 N 1.46503 * 109.47036 * 65.00289 * 10 9 7 13 13 C 1.34768 * 120.00042 * 204.99729 * 12 10 9 14 14 O 1.21289 * 120.00294 * 0.02562 * 13 12 10 15 15 C 1.50704 * 120.00173 * 180.02562 * 13 12 10 16 16 H 1.08997 * 115.54434 * 325.66526 * 15 13 12 17 17 C 1.52997 * 117.50069 * 111.37745 * 15 13 12 18 18 C 1.52993 * 59.99960 * 107.48940 * 17 15 13 19 19 Cl 1.80301 * 117.50162 * 252.50698 * 18 17 15 20 20 Cl 1.80304 * 117.51837 * 107.48246 * 18 17 15 21 21 C 1.50706 * 109.46856 * 185.00344 * 10 9 7 22 22 C 1.38234 * 120.00196 * 100.00429 * 21 10 9 23 23 C 1.38235 * 119.99814 * 179.97438 * 22 21 10 24 24 C 1.38230 * 120.00326 * 359.97438 * 23 22 21 25 25 C 1.38243 * 120.00092 * 359.97438 * 24 23 22 26 26 C 1.38234 * 119.99618 * 359.97438 * 25 24 23 27 27 H 0.96993 * 120.00619 * 359.97438 * 1 2 3 28 28 H 1.09003 * 109.46679 * 60.00094 * 9 7 2 29 29 H 1.09000 * 109.47057 * 300.00605 * 9 7 2 30 30 H 0.96996 * 119.99340 * 24.99962 * 12 10 9 31 31 H 1.08999 * 117.49867 * 214.97922 * 17 15 13 32 32 H 1.08998 * 117.49848 * 0.02562 * 17 15 13 33 33 H 1.08000 * 119.99516 * 0.24808 * 22 21 10 34 34 H 1.08000 * 119.99297 * 179.97438 * 23 22 21 35 35 H 1.08001 * 120.00350 * 179.97438 * 24 23 22 36 36 H 1.07999 * 120.00235 * 179.97438 * 25 24 23 37 37 H 1.08005 * 119.99804 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7090 1.3465 -0.0006 5 1 1.8903 2.3965 -1.2124 6 1 1.8904 2.3964 1.2126 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2512 -2.4992 -0.0005 10 6 2.2455 -3.6620 -0.0018 11 1 2.9290 -3.5547 -0.8441 12 7 3.0075 -3.6543 1.2495 13 6 4.2321 -4.2149 1.2961 14 8 4.7038 -4.7253 0.3020 15 6 5.0157 -4.2076 2.5834 16 1 4.8794 -3.3273 3.2116 17 6 5.2349 -5.5496 3.2847 18 6 6.3996 -4.8598 2.5717 19 17 6.9684 -5.5783 1.0190 20 17 7.6803 -4.1135 3.5983 21 6 1.4961 -4.9636 -0.1257 22 6 1.4095 -5.5974 -1.3512 23 6 0.7225 -6.7915 -1.4647 24 6 0.1225 -7.3522 -0.3527 25 6 0.2100 -6.7189 0.8731 26 6 0.8979 -5.5253 0.9868 27 1 -0.4851 0.8399 0.0004 28 1 0.6242 -2.5567 -0.8903 29 1 0.6248 -2.5571 0.8896 30 1 2.6304 -3.2458 2.0443 31 1 5.2427 -5.5525 4.3746 32 1 4.8128 -6.4378 2.8148 33 1 1.8823 -5.1617 -2.2190 34 1 0.6545 -7.2864 -2.4222 35 1 -0.4146 -8.2850 -0.4414 36 1 -0.2591 -7.1567 1.7418 37 1 0.9659 -5.0303 1.9443 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000153531445.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:12:08 Heat of formation + Delta-G solvation = 3.346287 kcal Electronic energy + Delta-G solvation = -22920.192535 eV Core-core repulsion = 19329.113384 eV Total energy + Delta-G solvation = -3591.079150 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 327.053 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -39.95675 -38.77930 -37.17752 -36.00420 -35.39324 -34.86691 -32.77132 -31.15519 -30.49100 -28.86285 -25.52041 -23.93379 -22.42501 -22.31517 -21.97070 -20.11311 -19.74313 -17.74714 -16.88026 -16.20711 -15.90396 -15.48998 -14.92445 -14.72793 -14.52132 -14.15876 -13.80115 -13.12599 -13.07956 -13.03076 -12.78895 -12.63172 -12.51477 -12.14451 -11.96729 -11.60753 -11.17695 -11.13398 -10.98730 -10.91575 -10.76694 -10.63615 -10.53823 -10.47299 -10.03090 -9.82174 -9.34002 -9.15425 -8.58881 -8.50242 -8.46905 -8.22248 -6.12507 -4.16165 1.10145 1.73965 1.76853 2.13119 2.54458 3.24161 3.31534 3.33284 3.37731 3.55733 4.03602 4.19045 4.30113 4.37545 4.97154 5.07050 5.22816 5.23812 5.23990 5.26965 5.34516 5.49407 5.55313 5.87004 5.90398 6.12843 6.31658 6.39605 6.53639 6.80908 6.81826 6.83418 7.06566 7.36807 7.45247 7.56942 7.84181 8.01751 8.21804 8.64287 8.90176 9.49469 10.97962 Molecular weight = 327.05amu Principal moments of inertia in cm(-1) A = 0.008039 B = 0.005245 C = 0.003506 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3482.033013 B = 5337.220136 C = 7983.923065 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.061 3.939 3 Si 0.890 3.110 4 H -0.272 1.272 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.521 4.521 8 H 0.059 0.941 9 C 0.023 3.977 10 C 0.186 3.814 11 H 0.088 0.912 12 N -0.692 5.692 13 C 0.533 3.467 14 O -0.521 6.521 15 C -0.156 4.156 16 H 0.145 0.855 17 C -0.120 4.120 18 C 0.022 3.978 19 Cl -0.055 7.055 20 Cl -0.098 7.098 21 C -0.071 4.071 22 C -0.107 4.107 23 C -0.122 4.122 24 C -0.135 4.135 25 C -0.125 4.125 26 C -0.108 4.108 27 H 0.261 0.739 28 H 0.035 0.965 29 H 0.025 0.975 30 H 0.402 0.598 31 H 0.127 0.873 32 H 0.124 0.876 33 H 0.120 0.880 34 H 0.116 0.884 35 H 0.113 0.887 36 H 0.114 0.886 37 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.600 -13.020 7.299 16.321 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.141 4.141 3 Si 0.718 3.282 4 H -0.197 1.197 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.559 4.559 8 H 0.077 0.923 9 C -0.014 4.014 10 C 0.082 3.918 11 H 0.106 0.894 12 N -0.341 5.341 13 C 0.317 3.683 14 O -0.397 6.397 15 C -0.179 4.179 16 H 0.163 0.837 17 C -0.158 4.158 18 C -0.030 4.030 19 Cl -0.027 7.027 20 Cl -0.071 7.071 21 C -0.072 4.072 22 C -0.126 4.126 23 C -0.140 4.140 24 C -0.153 4.153 25 C -0.143 4.143 26 C -0.126 4.126 27 H 0.071 0.929 28 H 0.053 0.947 29 H 0.043 0.957 30 H 0.236 0.764 31 H 0.145 0.855 32 H 0.142 0.858 33 H 0.138 0.862 34 H 0.134 0.866 35 H 0.131 0.869 36 H 0.133 0.867 37 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 6.933 -13.247 6.510 16.307 hybrid contribution 0.313 1.346 0.405 1.440 sum 7.246 -11.901 6.915 15.555 Atomic orbital electron populations 1.69959 1.06022 1.26749 1.50287 1.24981 0.94783 0.99242 0.95085 0.86560 0.80229 0.83751 0.77659 1.19671 1.20966 1.21007 1.21169 0.93130 0.90339 1.51239 0.92294 1.19401 0.93202 0.90133 0.98644 1.20272 0.93337 0.91998 0.86169 0.89368 1.45882 1.16313 1.57396 1.14472 1.19170 0.81979 0.79224 0.87973 1.90801 1.68668 1.44830 1.35407 1.23160 0.94533 1.00152 1.00021 0.83739 1.23870 0.94664 0.96039 1.01199 1.26313 0.84433 1.03302 0.88956 1.98786 1.90053 1.83221 1.30661 1.98745 1.56375 1.83629 1.68358 1.20533 0.96920 0.96451 0.93343 1.21018 0.99053 0.95048 0.97450 1.21044 0.98541 0.96167 0.98294 1.21000 1.01007 1.00035 0.93225 1.21040 0.99890 0.96041 0.97347 1.20902 0.97688 0.95573 0.98474 0.92893 0.94708 0.95690 0.76371 0.85525 0.85765 0.86197 0.86631 0.86862 0.86749 0.86559 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.13 13.29 55.43 0.74 -24.39 16 2 C 0.06 1.63 5.46 -17.82 -0.10 1.54 16 3 Si 0.89 20.76 29.54 -169.99 -5.02 15.74 16 4 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 5 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 6 H -0.28 -6.55 7.11 56.52 0.40 -6.14 16 7 C -0.52 -13.41 8.84 -34.44 -0.30 -13.72 16 8 H 0.06 1.53 7.74 -52.48 -0.41 1.12 16 9 C 0.02 0.54 4.49 -27.88 -0.13 0.42 16 10 C 0.19 3.59 2.12 -69.08 -0.15 3.45 16 11 H 0.09 1.89 7.44 -51.93 -0.39 1.50 16 12 N -0.69 -11.50 4.03 -54.93 -0.22 -11.72 16 13 C 0.53 8.60 7.57 -10.99 -0.08 8.51 16 14 O -0.52 -9.95 13.36 5.55 0.07 -9.88 16 15 C -0.16 -1.91 6.03 -91.77 -0.55 -2.46 16 16 H 0.14 1.50 8.14 -51.93 -0.42 1.07 16 17 C -0.12 -1.15 9.92 -26.74 -0.27 -1.41 16 18 C 0.02 0.27 3.61 -26.74 -0.10 0.18 16 19 Cl -0.05 -0.80 26.13 -51.86 -1.35 -2.16 16 20 Cl -0.10 -1.12 29.29 -51.86 -1.52 -2.64 16 21 C -0.07 -1.25 4.91 -104.62 -0.51 -1.77 16 22 C -0.11 -1.80 9.67 -39.58 -0.38 -2.18 16 23 C -0.12 -1.78 10.05 -39.59 -0.40 -2.18 16 24 C -0.13 -1.83 10.05 -39.58 -0.40 -2.23 16 25 C -0.13 -1.75 10.05 -39.58 -0.40 -2.15 16 26 C -0.11 -1.70 9.32 -39.58 -0.37 -2.07 16 27 H 0.26 7.01 8.31 -40.82 -0.34 6.67 16 28 H 0.03 0.89 8.14 -51.93 -0.42 0.46 16 29 H 0.02 0.60 8.14 -51.93 -0.42 0.18 16 30 H 0.40 6.04 8.60 -40.82 -0.35 5.69 16 31 H 0.13 0.86 8.14 -51.93 -0.42 0.44 16 32 H 0.12 1.22 8.14 -51.93 -0.42 0.80 16 33 H 0.12 1.95 8.04 -52.49 -0.42 1.52 16 34 H 0.12 1.39 8.06 -52.49 -0.42 0.97 16 35 H 0.11 1.24 8.06 -52.49 -0.42 0.81 16 36 H 0.11 1.30 8.06 -52.49 -0.42 0.88 16 37 H 0.12 1.69 7.72 -52.48 -0.40 1.28 16 LS Contribution 351.76 15.07 5.30 5.30 Total: -1.00 -30.09 351.76 -10.62 -40.71 By element: Atomic # 1 Polarization: 9.60 SS G_CDS: -4.49 Total: 5.11 kcal Atomic # 6 Polarization: -11.94 SS G_CDS: -4.13 Total: -16.07 kcal Atomic # 7 Polarization: -36.63 SS G_CDS: 0.52 Total: -36.11 kcal Atomic # 8 Polarization: -9.95 SS G_CDS: 0.07 Total: -9.88 kcal Atomic # 14 Polarization: 20.76 SS G_CDS: -5.02 Total: 15.74 kcal Atomic # 17 Polarization: -1.93 SS G_CDS: -2.87 Total: -4.80 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -30.09 -10.62 -40.71 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000153531445.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.061 kcal (2) G-P(sol) polarization free energy of solvation -30.092 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.969 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.623 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.714 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.346 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds