Wall clock time and date at job start Tue Mar 31 2020 15:12:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86802 * 119.99832 * 2 1 4 4 H 1.48492 * 109.47291 * 180.02562 * 3 2 1 5 5 H 1.48495 * 109.47212 * 300.00458 * 3 2 1 6 6 H 1.48504 * 109.47055 * 60.00322 * 3 2 1 7 7 C 1.37873 * 120.00477 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00490 * 179.97438 * 7 2 1 9 9 C 1.50703 * 120.00123 * 359.97438 * 7 2 1 10 10 C 1.52997 * 109.47231 * 179.97438 * 9 7 2 11 11 H 1.09001 * 109.47492 * 305.00026 * 10 9 7 12 12 N 1.46503 * 109.47036 * 65.00289 * 10 9 7 13 13 C 1.34768 * 120.00042 * 204.99729 * 12 10 9 14 14 O 1.21289 * 120.00294 * 0.02562 * 13 12 10 15 15 C 1.50704 * 120.00173 * 180.02562 * 13 12 10 16 16 H 1.08997 * 115.54434 * 325.66526 * 15 13 12 17 17 C 1.52997 * 117.50069 * 111.37745 * 15 13 12 18 18 C 1.52993 * 59.99960 * 107.48940 * 17 15 13 19 19 Cl 1.80301 * 117.50162 * 252.50698 * 18 17 15 20 20 Cl 1.80304 * 117.51837 * 107.48246 * 18 17 15 21 21 C 1.50706 * 109.46856 * 185.00344 * 10 9 7 22 22 C 1.38234 * 120.00196 * 100.00429 * 21 10 9 23 23 C 1.38235 * 119.99814 * 179.97438 * 22 21 10 24 24 C 1.38230 * 120.00326 * 359.97438 * 23 22 21 25 25 C 1.38243 * 120.00092 * 359.97438 * 24 23 22 26 26 C 1.38234 * 119.99618 * 359.97438 * 25 24 23 27 27 H 0.96993 * 120.00619 * 359.97438 * 1 2 3 28 28 H 1.09003 * 109.46679 * 60.00094 * 9 7 2 29 29 H 1.09000 * 109.47057 * 300.00605 * 9 7 2 30 30 H 0.96996 * 119.99340 * 24.99962 * 12 10 9 31 31 H 1.08999 * 117.49867 * 214.97922 * 17 15 13 32 32 H 1.08998 * 117.49848 * 0.02562 * 17 15 13 33 33 H 1.08000 * 119.99516 * 0.24808 * 22 21 10 34 34 H 1.08000 * 119.99297 * 179.97438 * 23 22 21 35 35 H 1.08001 * 120.00350 * 179.97438 * 24 23 22 36 36 H 1.07999 * 120.00235 * 179.97438 * 25 24 23 37 37 H 1.08005 * 119.99804 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7090 1.3465 -0.0006 5 1 1.8903 2.3965 -1.2124 6 1 1.8904 2.3964 1.2126 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2512 -2.4992 -0.0005 10 6 2.2455 -3.6620 -0.0018 11 1 2.9290 -3.5547 -0.8441 12 7 3.0075 -3.6543 1.2495 13 6 4.2321 -4.2149 1.2961 14 8 4.7038 -4.7253 0.3020 15 6 5.0157 -4.2076 2.5834 16 1 4.8794 -3.3273 3.2116 17 6 5.2349 -5.5496 3.2847 18 6 6.3996 -4.8598 2.5717 19 17 6.9684 -5.5783 1.0190 20 17 7.6803 -4.1135 3.5983 21 6 1.4961 -4.9636 -0.1257 22 6 1.4095 -5.5974 -1.3512 23 6 0.7225 -6.7915 -1.4647 24 6 0.1225 -7.3522 -0.3527 25 6 0.2100 -6.7189 0.8731 26 6 0.8979 -5.5253 0.9868 27 1 -0.4851 0.8399 0.0004 28 1 0.6242 -2.5567 -0.8903 29 1 0.6248 -2.5571 0.8896 30 1 2.6304 -3.2458 2.0443 31 1 5.2427 -5.5525 4.3746 32 1 4.8128 -6.4378 2.8148 33 1 1.8823 -5.1617 -2.2190 34 1 0.6545 -7.2864 -2.4222 35 1 -0.4146 -8.2850 -0.4414 36 1 -0.2591 -7.1567 1.7418 37 1 0.9659 -5.0303 1.9443 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000153531445.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:12:07 Heat of formation + Delta-G solvation = -12.106763 kcal Electronic energy + Delta-G solvation = -22920.862629 eV Core-core repulsion = 19329.113384 eV Total energy + Delta-G solvation = -3591.749245 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 327.053 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.22680 -39.94714 -38.24038 -37.00574 -36.73312 -35.99774 -34.70458 -32.50268 -31.66293 -30.53150 -27.10418 -25.25055 -23.75986 -23.35818 -23.23918 -21.44858 -21.03759 -18.92790 -18.54828 -17.68703 -17.11972 -16.69159 -16.44373 -16.19706 -15.81669 -15.38065 -15.07307 -14.54198 -14.21313 -14.17380 -14.10486 -14.04240 -13.65100 -13.46706 -13.36782 -12.98043 -12.89360 -12.62036 -12.46505 -12.13400 -12.11366 -11.91847 -11.82154 -11.59152 -11.55698 -11.29107 -11.03388 -10.61775 -10.39228 -9.93181 -9.72382 -9.49241 -8.19989 -6.29596 0.15549 0.53828 0.59026 1.14860 1.37949 1.41638 1.44285 1.52362 2.21237 2.39983 2.43017 2.98779 3.05377 3.14804 3.36652 3.84165 4.03917 4.06721 4.19793 4.23935 4.35192 4.47601 4.55175 4.68053 4.72901 4.79649 4.81831 5.15411 5.23006 5.30004 5.45227 5.63284 5.64045 5.67396 5.79317 5.93384 6.17615 6.22566 6.70770 6.83750 7.35727 7.39879 8.90820 Molecular weight = 327.05amu Principal moments of inertia in cm(-1) A = 0.008039 B = 0.005245 C = 0.003506 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3482.033013 B = 5337.220136 C = 7983.923065 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.925 5.925 2 C 0.012 3.988 3 Si 0.953 3.047 4 H -0.270 1.270 5 H -0.284 1.284 6 H -0.275 1.275 7 C -0.526 4.526 8 H 0.053 0.947 9 C 0.037 3.963 10 C 0.204 3.796 11 H 0.057 0.943 12 N -0.689 5.689 13 C 0.530 3.470 14 O -0.554 6.554 15 C -0.163 4.163 16 H 0.167 0.833 17 C -0.086 4.086 18 C 0.010 3.990 19 Cl -0.085 7.085 20 Cl -0.089 7.089 21 C -0.096 4.096 22 C -0.133 4.133 23 C -0.125 4.125 24 C -0.130 4.130 25 C -0.123 4.123 26 C -0.118 4.118 27 H 0.263 0.737 28 H 0.002 0.998 29 H 0.015 0.985 30 H 0.409 0.591 31 H 0.165 0.835 32 H 0.125 0.875 33 H 0.109 0.891 34 H 0.140 0.860 35 H 0.149 0.851 36 H 0.147 0.853 37 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.595 -14.229 9.341 18.255 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.565 5.565 2 C -0.186 4.186 3 Si 0.779 3.221 4 H -0.194 1.194 5 H -0.210 1.210 6 H -0.200 1.200 7 C -0.564 4.564 8 H 0.072 0.928 9 C 0.000 4.000 10 C 0.099 3.901 11 H 0.075 0.925 12 N -0.339 5.339 13 C 0.315 3.685 14 O -0.433 6.433 15 C -0.185 4.185 16 H 0.184 0.816 17 C -0.124 4.124 18 C -0.043 4.043 19 Cl -0.058 7.058 20 Cl -0.062 7.062 21 C -0.097 4.097 22 C -0.152 4.152 23 C -0.143 4.143 24 C -0.148 4.148 25 C -0.141 4.141 26 C -0.136 4.136 27 H 0.072 0.928 28 H 0.020 0.980 29 H 0.033 0.967 30 H 0.245 0.755 31 H 0.183 0.817 32 H 0.143 0.857 33 H 0.127 0.873 34 H 0.158 0.842 35 H 0.167 0.833 36 H 0.165 0.835 37 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 6.937 -14.456 8.576 18.183 hybrid contribution 0.294 1.673 -0.241 1.716 sum 7.231 -12.783 8.335 16.887 Atomic orbital electron populations 1.70065 1.07397 1.27616 1.51464 1.25734 0.95516 1.02512 0.94885 0.85582 0.78956 0.79842 0.77763 1.19405 1.21009 1.20010 1.21425 0.92981 0.91574 1.50450 0.92838 1.19139 0.93311 0.91115 0.96448 1.19681 0.92048 0.91896 0.86496 0.92498 1.45761 1.16700 1.57783 1.13659 1.19772 0.81497 0.78094 0.89101 1.90791 1.69220 1.46111 1.37130 1.23127 0.93952 1.02818 0.98566 0.81599 1.24088 0.91061 0.94238 1.02993 1.26507 0.84736 1.04433 0.88576 1.98782 1.90389 1.83643 1.32954 1.98747 1.56168 1.83610 1.67644 1.20416 0.98459 0.96169 0.94666 1.21148 1.00438 0.96574 0.97021 1.21356 0.97705 0.95198 1.00069 1.21456 0.99913 1.00910 0.92485 1.21440 0.98800 0.95042 0.98812 1.21077 0.97909 0.96524 0.98101 0.92757 0.98011 0.96694 0.75455 0.81689 0.85708 0.87297 0.84249 0.83332 0.83491 0.85725 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -53.18 13.29 21.45 0.28 -52.89 16 2 C 0.01 0.66 5.46 84.65 0.46 1.13 16 3 Si 0.95 42.94 29.54 68.60 2.03 44.97 16 4 H -0.27 -11.93 7.11 99.48 0.71 -11.22 16 5 H -0.28 -12.77 7.11 99.48 0.71 -12.06 16 6 H -0.27 -11.91 7.11 99.48 0.71 -11.21 16 7 C -0.53 -27.89 8.84 25.60 0.23 -27.67 16 8 H 0.05 2.84 7.74 -2.91 -0.02 2.82 16 9 C 0.04 1.81 4.49 29.85 0.13 1.95 16 10 C 0.20 8.26 2.12 44.25 0.09 8.35 16 11 H 0.06 2.63 7.44 -2.39 -0.02 2.61 16 12 N -0.69 -23.27 4.03 -446.09 -1.80 -25.07 16 13 C 0.53 17.07 7.57 87.66 0.66 17.74 16 14 O -0.55 -21.71 13.36 -3.06 -0.04 -21.76 16 15 C -0.16 -3.68 6.03 -11.54 -0.07 -3.75 16 16 H 0.17 3.01 8.14 -2.39 -0.02 3.00 16 17 C -0.09 -1.40 9.92 30.59 0.30 -1.10 16 18 C 0.01 0.22 3.61 30.59 0.11 0.33 16 19 Cl -0.08 -2.49 26.13 -2.72 -0.07 -2.56 16 20 Cl -0.09 -1.86 29.29 -2.72 -0.08 -1.94 16 21 C -0.10 -3.47 4.91 -19.86 -0.10 -3.57 16 22 C -0.13 -4.61 9.67 22.27 0.22 -4.39 16 23 C -0.13 -3.50 10.05 22.27 0.22 -3.27 16 24 C -0.13 -3.15 10.05 22.27 0.22 -2.93 16 25 C -0.12 -3.12 10.05 22.27 0.22 -2.89 16 26 C -0.12 -3.62 9.32 22.27 0.21 -3.41 16 27 H 0.26 14.32 8.31 -92.71 -0.77 13.55 16 28 H 0.00 0.09 8.14 -2.39 -0.02 0.07 16 29 H 0.01 0.74 8.14 -2.39 -0.02 0.72 16 30 H 0.41 12.29 8.60 -92.71 -0.80 11.50 16 31 H 0.17 1.46 8.14 -2.39 -0.02 1.44 16 32 H 0.12 2.11 8.14 -2.39 -0.02 2.10 16 33 H 0.11 3.83 8.04 -2.91 -0.02 3.81 16 34 H 0.14 3.11 8.06 -2.91 -0.02 3.09 16 35 H 0.15 2.56 8.06 -2.91 -0.02 2.54 16 36 H 0.15 2.73 8.06 -2.91 -0.02 2.71 16 37 H 0.12 3.49 7.72 -2.91 -0.02 3.47 16 Total: -1.00 -67.35 351.76 3.54 -63.81 By element: Atomic # 1 Polarization: 18.62 SS G_CDS: 0.30 Total: 18.92 kcal Atomic # 6 Polarization: -26.41 SS G_CDS: 2.92 Total: -23.49 kcal Atomic # 7 Polarization: -76.45 SS G_CDS: -1.51 Total: -77.96 kcal Atomic # 8 Polarization: -21.71 SS G_CDS: -0.04 Total: -21.76 kcal Atomic # 14 Polarization: 42.94 SS G_CDS: 2.03 Total: 44.97 kcal Atomic # 17 Polarization: -4.35 SS G_CDS: -0.15 Total: -4.50 kcal Total: -67.35 3.54 -63.81 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000153531445.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.700 kcal (2) G-P(sol) polarization free energy of solvation -67.350 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.650 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.543 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.807 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.107 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds