Wall clock time and date at job start Tue Mar 31 2020 14:53:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09002 * 109.57862 * 2 1 4 4 C 1.53533 * 109.58369 * 239.72512 * 2 1 3 5 5 N 1.47295 * 107.58242 * 181.86519 * 4 2 1 6 6 C 1.34782 * 121.15495 * 221.95932 * 5 4 2 7 7 O 1.21298 * 119.99860 * 174.19130 * 6 5 4 8 8 C 1.50700 * 119.99947 * 354.19529 * 6 5 4 9 9 S 1.81003 * 109.46920 * 185.51965 * 8 6 5 10 10 C 1.76196 * 99.99758 * 179.97438 * 9 8 6 11 11 H 1.07996 * 120.00256 * 359.97438 * 10 9 8 12 12 C 1.38803 * 119.99920 * 179.97438 * 10 9 8 13 13 N 1.31633 * 119.99942 * 0.02562 * 12 10 9 14 14 Si 1.86796 * 120.00043 * 180.02562 * 12 10 9 15 15 H 1.48500 * 109.47265 * 0.02562 * 14 12 10 16 16 H 1.48500 * 109.46915 * 120.00332 * 14 12 10 17 17 H 1.48499 * 109.47305 * 240.00236 * 14 12 10 18 18 C 1.40548 * 117.69073 * 41.93683 * 5 4 2 19 19 C 1.38573 * 120.08214 * 166.29914 * 18 5 4 20 20 C 1.38349 * 119.87105 * 179.85962 * 19 18 5 21 21 Cl 1.73600 * 119.98465 * 179.97438 * 20 19 18 22 22 C 1.38382 * 120.03260 * 359.97383 * 20 19 18 23 23 C 1.38192 * 120.28321 * 0.07431 * 22 20 19 24 24 C 1.38708 * 120.06483 * 359.97438 * 23 22 20 25 25 O 1.35925 * 119.64604 * 179.66748 * 24 23 22 26 26 H 1.08999 * 109.47041 * 180.02562 * 1 2 3 27 27 H 1.08996 * 109.47217 * 299.99749 * 1 2 3 28 28 H 1.08996 * 109.46985 * 60.00312 * 1 2 3 29 29 H 1.08996 * 109.83978 * 301.38468 * 4 2 1 30 30 H 1.09001 * 109.83697 * 62.34565 * 4 2 1 31 31 H 1.09007 * 109.46724 * 305.51616 * 8 6 5 32 32 H 1.08994 * 109.47454 * 65.51866 * 8 6 5 33 33 H 0.97001 * 120.00007 * 179.97438 * 13 12 10 34 34 H 1.08002 * 120.06756 * 359.80917 * 19 18 5 35 35 H 1.08003 * 119.86188 * 180.02562 * 22 20 19 36 36 H 1.07998 * 119.96930 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8953 1.0270 0.0000 4 6 2.0447 -0.7293 -1.2492 5 7 3.5160 -0.7429 -1.1820 6 6 4.2663 -0.5043 -2.2760 7 8 5.4720 -0.4163 -2.1770 8 6 3.6072 -0.3469 -3.6220 9 16 4.8779 -0.2007 -4.9026 10 6 3.8571 -0.0340 -6.3290 11 1 2.7819 -0.0445 -6.2278 12 6 4.4347 0.1107 -7.5828 13 7 5.7452 0.1230 -7.7062 14 14 3.3524 0.2881 -9.0949 15 1 1.9245 0.2439 -8.6896 16 1 3.6382 1.5854 -9.7587 17 1 3.6342 -0.8234 -10.0385 18 6 4.1105 -1.0129 0.0626 19 6 5.4600 -1.3186 0.1361 20 6 6.0413 -1.5808 1.3639 21 17 7.7316 -1.9648 1.4593 22 6 5.2760 -1.5371 2.5160 23 6 3.9296 -1.2336 2.4471 24 6 3.3385 -0.9704 1.2202 25 8 2.0120 -0.6795 1.1616 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 1.6656 -1.7511 -1.2635 30 1 1.7203 -0.2010 -2.1458 31 1 2.9846 -1.2182 -3.8257 32 1 2.9878 0.5500 -3.6207 33 1 6.1489 0.2238 -8.5825 34 1 6.0568 -1.3530 -0.7634 35 1 5.7327 -1.7418 3.4730 36 1 3.3370 -1.2013 3.3494 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000173605487.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:53:43 Heat of formation + Delta-G solvation = -40.280835 kcal Electronic energy + Delta-G solvation = -22768.578196 eV Core-core repulsion = 19177.650938 eV Total energy + Delta-G solvation = -3590.927258 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 327.048 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.51540 -39.09320 -38.09261 -36.26630 -35.50755 -32.79966 -32.52318 -31.23813 -29.70178 -28.37338 -26.75593 -25.59130 -23.77560 -23.02679 -21.24863 -19.79888 -18.55042 -17.82370 -17.52806 -16.74327 -16.29556 -15.73422 -15.62150 -14.93968 -14.88745 -14.46851 -14.22700 -13.86121 -13.77679 -13.57495 -13.23395 -12.88060 -12.79950 -12.69374 -12.37130 -12.34396 -11.94460 -11.72942 -11.51063 -11.13877 -11.11332 -10.96785 -10.85232 -10.69863 -10.25818 -9.91667 -9.41352 -9.16389 -8.55633 -8.37926 -7.92250 -6.63072 -6.31117 -4.03582 0.99485 1.13587 2.09567 2.42861 2.65143 2.91348 3.15161 3.15772 3.24550 3.37550 3.55240 4.08848 4.10505 4.33809 4.50519 4.58726 4.77304 4.90162 4.96515 5.00789 5.04692 5.21126 5.23455 5.25798 5.41641 5.46985 5.59358 5.64541 5.73102 5.79690 5.89221 5.99663 6.13720 6.22563 6.64510 7.06680 7.15943 7.50490 8.13120 8.25545 9.14363 10.76321 Molecular weight = 327.05amu Principal moments of inertia in cm(-1) A = 0.013997 B = 0.003540 C = 0.002847 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1999.952740 B = 7907.481170 C = 9833.110392 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.074 3.926 3 H 0.080 0.920 4 C 0.070 3.930 5 N -0.563 5.563 6 C 0.537 3.463 7 O -0.485 6.485 8 C -0.152 4.152 9 S -0.054 6.054 10 C -0.538 4.538 11 H 0.074 0.926 12 C 0.075 3.925 13 N -0.866 5.866 14 Si 0.920 3.080 15 H -0.271 1.271 16 H -0.279 1.279 17 H -0.279 1.279 18 C 0.103 3.897 19 C -0.108 4.108 20 C -0.042 4.042 21 Cl -0.067 7.067 22 C -0.104 4.104 23 C -0.117 4.117 24 C 0.094 3.906 25 O -0.308 6.308 26 H 0.071 0.929 27 H 0.073 0.927 28 H 0.084 0.916 29 H 0.090 0.910 30 H 0.113 0.887 31 H 0.094 0.906 32 H 0.095 0.905 33 H 0.269 0.731 34 H 0.178 0.822 35 H 0.138 0.862 36 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.121 -2.194 19.682 21.803 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.017 3.983 3 H 0.098 0.902 4 C -0.052 4.052 5 N -0.289 5.289 6 C 0.327 3.673 7 O -0.358 6.358 8 C -0.302 4.302 9 S 0.173 5.827 10 C -0.686 4.686 11 H 0.093 0.907 12 C -0.135 4.135 13 N -0.501 5.501 14 Si 0.746 3.254 15 H -0.196 1.196 16 H -0.205 1.205 17 H -0.205 1.205 18 C 0.008 3.992 19 C -0.128 4.128 20 C -0.069 4.069 21 Cl -0.038 7.038 22 C -0.124 4.124 23 C -0.136 4.136 24 C 0.046 3.954 25 O -0.222 6.222 26 H 0.090 0.910 27 H 0.092 0.908 28 H 0.103 0.897 29 H 0.108 0.892 30 H 0.131 0.869 31 H 0.112 0.888 32 H 0.113 0.887 33 H 0.079 0.921 34 H 0.195 0.805 35 H 0.156 0.844 36 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -7.189 -2.186 19.705 21.089 hybrid contribution -1.893 0.154 -1.298 2.300 sum -9.082 -2.031 18.407 20.626 Atomic orbital electron populations 1.21770 0.90663 1.03923 1.03741 1.22836 0.96347 0.95601 0.83555 0.90163 1.22797 0.78814 1.03137 1.00501 1.45928 1.07103 1.68955 1.06949 1.20620 0.87114 0.74856 0.84713 1.90576 1.14066 1.46428 1.84707 1.23588 1.05987 1.05070 0.95547 1.85473 1.06089 1.95434 0.95706 1.22870 0.94574 1.58516 0.92633 0.90748 1.24999 0.95405 0.94403 0.98673 1.70017 1.09176 1.46233 1.24639 0.86096 0.79939 0.78046 0.81299 1.19578 1.20491 1.20483 1.17836 0.93133 1.03661 0.84561 1.21709 0.93632 0.98130 0.99358 1.20657 0.85967 1.05717 0.94572 1.98364 1.14171 1.92713 1.98580 1.20771 0.92662 1.01301 0.97646 1.20253 0.93920 1.04124 0.95296 1.18569 0.83336 1.01170 0.92281 1.86028 1.20209 1.73723 1.42237 0.91022 0.90805 0.89681 0.89192 0.86925 0.88775 0.88656 0.92087 0.80513 0.84424 0.84059 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.90 9.59 37.16 0.36 -0.54 16 2 C 0.07 0.70 3.58 -26.45 -0.09 0.60 16 3 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 4 C 0.07 0.75 5.69 -3.33 -0.02 0.73 16 5 N -0.56 -8.38 3.01 -112.35 -0.34 -8.72 16 6 C 0.54 9.86 7.60 -10.98 -0.08 9.77 16 7 O -0.49 -10.46 12.75 5.54 0.07 -10.39 16 8 C -0.15 -2.88 4.63 36.01 0.17 -2.71 16 9 S -0.05 -1.39 20.58 -107.50 -2.21 -3.60 16 10 C -0.54 -14.70 9.50 30.94 0.29 -14.41 16 11 H 0.07 1.91 7.80 -52.49 -0.41 1.50 16 12 C 0.07 2.07 5.49 -17.43 -0.10 1.97 16 13 N -0.87 -25.43 13.22 55.49 0.73 -24.69 16 14 Si 0.92 20.74 29.55 -169.99 -5.02 15.71 16 15 H -0.27 -5.89 7.11 56.52 0.40 -5.49 16 16 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 17 H -0.28 -6.22 7.11 56.52 0.40 -5.81 16 18 C 0.10 1.55 6.33 -83.38 -0.53 1.02 16 19 C -0.11 -1.71 8.72 -39.42 -0.34 -2.05 16 20 C -0.04 -0.57 6.32 -39.49 -0.25 -0.82 16 21 Cl -0.07 -0.87 28.95 -51.86 -1.50 -2.38 16 22 C -0.10 -1.15 9.81 -39.55 -0.39 -1.54 16 23 C -0.12 -1.27 9.97 -39.42 -0.39 -1.66 16 24 C 0.09 1.21 6.51 -39.05 -0.25 0.95 16 25 O -0.31 -3.53 9.98 -19.50 -0.19 -3.73 16 26 H 0.07 0.43 8.14 -51.93 -0.42 0.00 16 27 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 28 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 29 H 0.09 0.87 8.14 -51.93 -0.42 0.45 16 30 H 0.11 1.04 6.43 -51.93 -0.33 0.71 16 31 H 0.09 1.62 8.08 -51.91 -0.42 1.20 16 32 H 0.10 1.63 7.63 -51.92 -0.40 1.23 16 33 H 0.27 7.34 8.31 -40.82 -0.34 7.00 16 34 H 0.18 3.27 5.17 -52.56 -0.27 3.00 16 35 H 0.14 1.16 8.06 -52.48 -0.42 0.74 16 36 H 0.14 1.17 8.06 -52.49 -0.42 0.75 16 LS Contribution 333.36 15.07 5.02 5.02 Total: -1.00 -32.64 333.36 -9.00 -41.64 By element: Atomic # 1 Polarization: 3.73 SS G_CDS: -3.92 Total: -0.19 kcal Atomic # 6 Polarization: -7.05 SS G_CDS: -1.63 Total: -8.68 kcal Atomic # 7 Polarization: -33.80 SS G_CDS: 0.40 Total: -33.41 kcal Atomic # 8 Polarization: -14.00 SS G_CDS: -0.12 Total: -14.12 kcal Atomic # 14 Polarization: 20.74 SS G_CDS: -5.02 Total: 15.71 kcal Atomic # 16 Polarization: -1.39 SS G_CDS: -2.21 Total: -3.60 kcal Atomic # 17 Polarization: -0.87 SS G_CDS: -1.50 Total: -2.38 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -32.64 -9.00 -41.64 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000173605487.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.358 kcal (2) G-P(sol) polarization free energy of solvation -32.639 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.281 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.000 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.639 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.281 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds