Wall clock time and date at job start Tue Mar 31 2020 14:53:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09002 * 109.57862 * 2 1 4 4 C 1.53533 * 109.58369 * 239.72512 * 2 1 3 5 5 N 1.47295 * 107.58242 * 181.86519 * 4 2 1 6 6 C 1.34782 * 121.15495 * 221.95932 * 5 4 2 7 7 O 1.21298 * 119.99860 * 174.19130 * 6 5 4 8 8 C 1.50700 * 119.99947 * 354.19529 * 6 5 4 9 9 S 1.81003 * 109.46920 * 185.51965 * 8 6 5 10 10 C 1.76196 * 99.99758 * 179.97438 * 9 8 6 11 11 H 1.07996 * 120.00256 * 359.97438 * 10 9 8 12 12 C 1.38803 * 119.99920 * 179.97438 * 10 9 8 13 13 N 1.31633 * 119.99942 * 0.02562 * 12 10 9 14 14 Si 1.86796 * 120.00043 * 180.02562 * 12 10 9 15 15 H 1.48500 * 109.47265 * 0.02562 * 14 12 10 16 16 H 1.48500 * 109.46915 * 120.00332 * 14 12 10 17 17 H 1.48499 * 109.47305 * 240.00236 * 14 12 10 18 18 C 1.40548 * 117.69073 * 41.93683 * 5 4 2 19 19 C 1.38573 * 120.08214 * 166.29914 * 18 5 4 20 20 C 1.38349 * 119.87105 * 179.85962 * 19 18 5 21 21 Cl 1.73600 * 119.98465 * 179.97438 * 20 19 18 22 22 C 1.38382 * 120.03260 * 359.97383 * 20 19 18 23 23 C 1.38192 * 120.28321 * 0.07431 * 22 20 19 24 24 C 1.38708 * 120.06483 * 359.97438 * 23 22 20 25 25 O 1.35925 * 119.64604 * 179.66748 * 24 23 22 26 26 H 1.08999 * 109.47041 * 180.02562 * 1 2 3 27 27 H 1.08996 * 109.47217 * 299.99749 * 1 2 3 28 28 H 1.08996 * 109.46985 * 60.00312 * 1 2 3 29 29 H 1.08996 * 109.83978 * 301.38468 * 4 2 1 30 30 H 1.09001 * 109.83697 * 62.34565 * 4 2 1 31 31 H 1.09007 * 109.46724 * 305.51616 * 8 6 5 32 32 H 1.08994 * 109.47454 * 65.51866 * 8 6 5 33 33 H 0.97001 * 120.00007 * 179.97438 * 13 12 10 34 34 H 1.08002 * 120.06756 * 359.80917 * 19 18 5 35 35 H 1.08003 * 119.86188 * 180.02562 * 22 20 19 36 36 H 1.07998 * 119.96930 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8953 1.0270 0.0000 4 6 2.0447 -0.7293 -1.2492 5 7 3.5160 -0.7429 -1.1820 6 6 4.2663 -0.5043 -2.2760 7 8 5.4720 -0.4163 -2.1770 8 6 3.6072 -0.3469 -3.6220 9 16 4.8779 -0.2007 -4.9026 10 6 3.8571 -0.0340 -6.3290 11 1 2.7819 -0.0445 -6.2278 12 6 4.4347 0.1107 -7.5828 13 7 5.7452 0.1230 -7.7062 14 14 3.3524 0.2881 -9.0949 15 1 1.9245 0.2439 -8.6896 16 1 3.6382 1.5854 -9.7587 17 1 3.6342 -0.8234 -10.0385 18 6 4.1105 -1.0129 0.0626 19 6 5.4600 -1.3186 0.1361 20 6 6.0413 -1.5808 1.3639 21 17 7.7316 -1.9648 1.4593 22 6 5.2760 -1.5371 2.5160 23 6 3.9296 -1.2336 2.4471 24 6 3.3385 -0.9704 1.2202 25 8 2.0120 -0.6795 1.1616 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 1.6656 -1.7511 -1.2635 30 1 1.7203 -0.2010 -2.1458 31 1 2.9846 -1.2182 -3.8257 32 1 2.9878 0.5500 -3.6207 33 1 6.1489 0.2238 -8.5825 34 1 6.0568 -1.3530 -0.7634 35 1 5.7327 -1.7418 3.4730 36 1 3.3370 -1.2013 3.3494 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000173605487.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:53:42 Heat of formation + Delta-G solvation = -59.970293 kcal Electronic energy + Delta-G solvation = -22769.431995 eV Core-core repulsion = 19177.650938 eV Total energy + Delta-G solvation = -3591.781057 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 327.048 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -42.57422 -40.33073 -39.04594 -37.27861 -36.68635 -34.60580 -33.58261 -32.42269 -30.86975 -29.48989 -27.73949 -27.56789 -24.79565 -23.93608 -22.29514 -20.95712 -19.76710 -19.40749 -18.70907 -17.89409 -17.37806 -16.98212 -16.89950 -16.61504 -16.17179 -15.85532 -15.32655 -15.06969 -14.86786 -14.69804 -14.50079 -14.18999 -13.82493 -13.60959 -13.48300 -13.18234 -13.08840 -12.93571 -12.86056 -12.68906 -12.60110 -12.37502 -12.00380 -11.75294 -11.59221 -11.29664 -11.17792 -10.75405 -10.32476 -9.60170 -8.97656 -8.71253 -8.36970 -6.16145 -0.03352 0.10445 0.99946 1.15287 1.32245 1.39562 1.41502 1.54350 1.73188 2.07532 2.23752 2.53801 2.98295 3.05138 3.28135 3.42988 3.63943 3.81535 3.86855 4.05082 4.08497 4.12625 4.17665 4.26148 4.36295 4.50761 4.59560 4.74926 4.89217 4.94728 4.97761 5.18407 5.21366 5.27142 5.40779 5.59007 5.88912 6.18102 6.20754 6.78346 7.04866 8.72448 Molecular weight = 327.05amu Principal moments of inertia in cm(-1) A = 0.013997 B = 0.003540 C = 0.002847 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1999.952740 B = 7907.481170 C = 9833.110392 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.073 3.927 3 H 0.077 0.923 4 C 0.061 3.939 5 N -0.557 5.557 6 C 0.534 3.466 7 O -0.530 6.530 8 C -0.123 4.123 9 S -0.145 6.145 10 C -0.544 4.544 11 H 0.088 0.912 12 C 0.014 3.986 13 N -0.912 5.912 14 Si 0.999 3.001 15 H -0.253 1.253 16 H -0.275 1.275 17 H -0.276 1.276 18 C 0.077 3.923 19 C -0.133 4.133 20 C -0.054 4.054 21 Cl -0.070 7.070 22 C -0.089 4.089 23 C -0.107 4.107 24 C 0.097 3.903 25 O -0.306 6.306 26 H 0.077 0.923 27 H 0.081 0.919 28 H 0.103 0.897 29 H 0.104 0.896 30 H 0.129 0.871 31 H 0.115 0.885 32 H 0.119 0.881 33 H 0.271 0.729 34 H 0.144 0.856 35 H 0.171 0.829 36 H 0.178 0.822 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.588 -2.184 21.311 24.847 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.016 3.984 3 H 0.095 0.905 4 C -0.060 4.060 5 N -0.282 5.282 6 C 0.324 3.676 7 O -0.406 6.406 8 C -0.274 4.274 9 S 0.082 5.918 10 C -0.692 4.692 11 H 0.106 0.894 12 C -0.190 4.190 13 N -0.548 5.548 14 Si 0.821 3.179 15 H -0.177 1.177 16 H -0.201 1.201 17 H -0.201 1.201 18 C -0.017 4.017 19 C -0.153 4.153 20 C -0.081 4.081 21 Cl -0.041 7.041 22 C -0.108 4.108 23 C -0.125 4.125 24 C 0.049 3.951 25 O -0.221 6.221 26 H 0.096 0.904 27 H 0.100 0.900 28 H 0.121 0.879 29 H 0.122 0.878 30 H 0.147 0.853 31 H 0.134 0.866 32 H 0.137 0.863 33 H 0.080 0.920 34 H 0.161 0.839 35 H 0.188 0.812 36 H 0.195 0.805 Dipole moment (debyes) X Y Z Total from point charges -10.703 -2.183 21.376 24.006 hybrid contribution -0.854 0.126 -1.612 1.828 sum -11.557 -2.057 19.765 22.988 Atomic orbital electron populations 1.21808 0.87785 1.04752 1.05051 1.23067 0.98312 0.94869 0.82150 0.90537 1.23200 0.76157 1.04575 1.02100 1.45840 1.08600 1.67675 1.06106 1.20472 0.86706 0.74977 0.85407 1.90587 1.15899 1.48677 1.85407 1.23376 1.03558 1.07077 0.93386 1.85691 1.11183 1.95800 0.99146 1.23226 0.95067 1.58031 0.92884 0.89434 1.26126 0.96803 0.93777 1.02337 1.70188 1.11453 1.47676 1.25508 0.84901 0.78539 0.77953 0.76542 1.17654 1.20085 1.20120 1.18004 0.93225 1.05317 0.85195 1.21491 0.94312 1.00358 0.99186 1.20797 0.86151 1.06384 0.94773 1.98357 1.14468 1.92750 1.98548 1.21148 0.92629 0.99159 0.97872 1.20706 0.93949 1.02119 0.95772 1.18775 0.83789 1.00472 0.92039 1.86048 1.19184 1.73706 1.43124 0.90420 0.90020 0.87857 0.87810 0.85345 0.86644 0.86280 0.91988 0.83899 0.81188 0.80507 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.21 9.59 71.98 0.69 -0.52 16 2 C 0.07 1.17 3.58 30.78 0.11 1.28 16 3 H 0.08 1.32 8.14 -2.39 -0.02 1.30 16 4 C 0.06 1.16 5.69 86.41 0.49 1.65 16 5 N -0.56 -16.39 3.01 -627.75 -1.89 -18.28 16 6 C 0.53 20.13 7.60 87.66 0.67 20.80 16 7 O -0.53 -24.38 12.75 -3.08 -0.04 -24.42 16 8 C -0.12 -4.66 4.63 71.24 0.33 -4.33 16 9 S -0.15 -7.83 20.58 -56.49 -1.16 -8.99 16 10 C -0.54 -29.93 9.50 67.96 0.65 -29.28 16 11 H 0.09 4.40 7.80 -2.91 -0.02 4.38 16 12 C 0.01 0.80 5.49 84.86 0.47 1.27 16 13 N -0.91 -55.08 13.22 21.65 0.29 -54.80 16 14 Si 1.00 42.31 29.55 68.60 2.03 44.34 16 15 H -0.25 -9.86 7.11 99.48 0.71 -9.15 16 16 H -0.28 -11.40 7.11 99.48 0.71 -10.69 16 17 H -0.28 -11.43 7.11 99.48 0.71 -10.72 16 18 C 0.08 2.30 6.33 38.05 0.24 2.54 16 19 C -0.13 -4.38 8.72 22.38 0.20 -4.19 16 20 C -0.05 -1.45 6.32 22.33 0.14 -1.31 16 21 Cl -0.07 -1.85 28.95 -2.72 -0.08 -1.93 16 22 C -0.09 -1.74 9.81 22.29 0.22 -1.53 16 23 C -0.11 -1.97 9.97 22.37 0.22 -1.75 16 24 C 0.10 2.29 6.51 22.61 0.15 2.44 16 25 O -0.31 -6.13 9.98 -92.70 -0.92 -7.06 16 26 H 0.08 0.63 8.14 -2.39 -0.02 0.61 16 27 H 0.08 0.64 8.14 -2.39 -0.02 0.62 16 28 H 0.10 0.57 8.14 -2.39 -0.02 0.55 16 29 H 0.10 1.73 8.14 -2.39 -0.02 1.71 16 30 H 0.13 2.01 6.43 -2.39 -0.02 1.99 16 31 H 0.12 3.85 8.08 -2.39 -0.02 3.83 16 32 H 0.12 3.91 7.63 -2.40 -0.02 3.89 16 33 H 0.27 15.20 8.31 -92.71 -0.77 14.43 16 34 H 0.14 5.77 5.17 -4.08 -0.02 5.75 16 35 H 0.17 2.22 8.06 -2.91 -0.02 2.20 16 36 H 0.18 2.04 8.06 -2.91 -0.02 2.02 16 Total: -1.00 -75.22 333.36 3.89 -71.33 By element: Atomic # 1 Polarization: 11.61 SS G_CDS: 1.11 Total: 12.72 kcal Atomic # 6 Polarization: -17.48 SS G_CDS: 4.57 Total: -12.92 kcal Atomic # 7 Polarization: -71.47 SS G_CDS: -1.60 Total: -73.08 kcal Atomic # 8 Polarization: -30.51 SS G_CDS: -0.96 Total: -31.48 kcal Atomic # 14 Polarization: 42.31 SS G_CDS: 2.03 Total: 44.34 kcal Atomic # 16 Polarization: -7.83 SS G_CDS: -1.16 Total: -8.99 kcal Atomic # 17 Polarization: -1.85 SS G_CDS: -0.08 Total: -1.93 kcal Total: -75.22 3.89 -71.33 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000173605487.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.359 kcal (2) G-P(sol) polarization free energy of solvation -75.223 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.863 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.893 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.330 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.970 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds