Wall clock time and date at job start Tue Mar 31 2020 14:53:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09001 * 109.58320 * 2 1 4 4 C 1.53537 * 109.58679 * 120.27802 * 2 1 3 5 5 N 1.47301 * 107.57900 * 178.02091 * 4 2 1 6 6 C 1.34776 * 121.15715 * 138.05129 * 5 4 2 7 7 O 1.21289 * 119.99619 * 185.81663 * 6 5 4 8 8 C 1.50700 * 119.99868 * 5.80710 * 6 5 4 9 9 S 1.81001 * 109.46679 * 174.48068 * 8 6 5 10 10 C 1.76201 * 99.99867 * 180.02562 * 9 8 6 11 11 H 1.07999 * 120.00304 * 0.02562 * 10 9 8 12 12 C 1.38798 * 120.00261 * 180.27913 * 10 9 8 13 13 N 1.31628 * 119.99578 * 359.72110 * 12 10 9 14 14 Si 1.86802 * 120.00315 * 179.72667 * 12 10 9 15 15 H 1.48500 * 109.47043 * 89.99509 * 14 12 10 16 16 H 1.48498 * 109.47203 * 209.99685 * 14 12 10 17 17 H 1.48501 * 109.46707 * 329.99664 * 14 12 10 18 18 C 1.40549 * 117.68450 * 318.32423 * 5 4 2 19 19 C 1.38682 * 120.00231 * 193.79070 * 18 5 4 20 20 C 1.38348 * 119.84859 * 179.90373 * 19 18 5 21 21 Cl 1.73601 * 119.98650 * 179.76510 * 20 19 18 22 22 C 1.38376 * 120.03275 * 359.79320 * 20 19 18 23 23 C 1.38201 * 120.28063 * 359.92698 * 22 20 19 24 24 C 1.38693 * 120.06885 * 0.02562 * 23 22 20 25 25 O 1.35935 * 119.64889 * 180.10736 * 24 23 22 26 26 H 1.09000 * 109.47087 * 299.71832 * 1 2 3 27 27 H 1.09003 * 109.47326 * 59.72026 * 1 2 3 28 28 H 1.09005 * 109.47205 * 179.72194 * 1 2 3 29 29 H 1.09006 * 109.83255 * 58.50315 * 4 2 1 30 30 H 1.09001 * 109.83811 * 297.54735 * 4 2 1 31 31 H 1.09001 * 109.46974 * 54.48469 * 8 6 5 32 32 H 1.08994 * 109.47654 * 294.48205 * 8 6 5 33 33 H 0.97003 * 119.99659 * 180.02562 * 13 12 10 34 34 H 1.08003 * 120.08568 * 359.66877 * 19 18 5 35 35 H 1.08007 * 119.86066 * 179.90862 * 22 20 19 36 36 H 1.08007 * 119.96663 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8953 1.0270 0.0000 4 6 2.0447 -0.7293 1.2492 5 7 3.5160 -0.7453 1.1804 6 6 4.2678 -0.5075 2.2734 7 8 5.4734 -0.4212 2.1731 8 6 3.6103 -0.3485 3.6201 9 16 4.8828 -0.2037 4.8992 10 6 3.8637 -0.0349 6.3267 11 1 2.7884 -0.0438 6.2267 12 6 4.4429 0.1147 7.5792 13 7 5.7535 0.1250 7.7011 14 14 3.3626 0.3013 9.0917 15 1 3.0716 -1.0392 9.6606 16 1 4.0678 1.1267 10.1049 17 1 2.0895 0.9648 8.7117 18 6 4.1086 -1.0115 -0.0659 19 6 5.4583 -1.3212 -0.1400 20 6 6.0379 -1.5846 -1.3683 21 17 7.7286 -1.9667 -1.4659 22 6 5.2709 -1.5430 -2.5193 23 6 3.9242 -1.2404 -2.4487 24 6 3.3348 -0.9760 -1.2214 25 8 2.0091 -0.6814 -1.1616 26 1 -0.3633 0.5095 0.8925 27 1 -0.3634 0.5182 -0.8875 28 1 -0.3634 -1.0277 -0.0050 29 1 1.6639 -1.7506 1.2644 30 1 1.7219 -0.2001 2.1458 31 1 2.9866 -1.2187 3.8249 32 1 2.9924 0.5493 3.6191 33 1 6.1583 0.2292 8.5765 34 1 6.0566 -1.3531 0.7586 35 1 5.7265 -1.7477 -3.4769 36 1 3.3304 -1.2089 -3.3503 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000173605501.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:53:45 Heat of formation + Delta-G solvation = -59.839671 kcal Electronic energy + Delta-G solvation = -22769.611207 eV Core-core repulsion = 19177.835815 eV Total energy + Delta-G solvation = -3591.775393 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 327.048 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -42.57576 -40.33305 -39.04428 -37.27833 -36.68551 -34.60574 -33.58310 -32.41994 -30.86842 -29.49094 -27.73742 -27.56759 -24.79708 -23.93372 -22.29477 -20.95545 -19.76552 -19.40804 -18.70893 -17.89322 -17.38226 -16.98116 -16.89619 -16.61609 -16.17165 -15.85389 -15.32402 -15.07050 -14.86416 -14.69602 -14.49783 -14.18987 -13.82508 -13.61040 -13.48316 -13.18626 -13.08698 -12.90905 -12.86311 -12.69590 -12.60831 -12.37600 -12.00374 -11.77607 -11.59236 -11.29593 -11.15923 -10.75276 -10.32871 -9.60023 -8.97732 -8.71227 -8.36721 -6.16042 -0.03209 0.10324 0.99960 1.15254 1.32258 1.39464 1.42619 1.53548 1.73125 2.07640 2.24063 2.53965 2.98454 3.05167 3.28221 3.43071 3.64038 3.81561 3.86805 4.05091 4.08511 4.12561 4.17638 4.25969 4.36310 4.50730 4.59584 4.74960 4.89203 4.94724 4.97760 5.18393 5.21433 5.27094 5.40520 5.59056 5.88922 6.17931 6.20843 6.78431 7.04960 8.72462 Molecular weight = 327.05amu Principal moments of inertia in cm(-1) A = 0.014000 B = 0.003540 C = 0.002847 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1999.525667 B = 7907.764646 C = 9833.730367 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.073 3.927 3 H 0.077 0.923 4 C 0.061 3.939 5 N -0.557 5.557 6 C 0.535 3.465 7 O -0.530 6.530 8 C -0.123 4.123 9 S -0.145 6.145 10 C -0.545 4.545 11 H 0.088 0.912 12 C 0.015 3.985 13 N -0.912 5.912 14 Si 0.998 3.002 15 H -0.268 1.268 16 H -0.280 1.280 17 H -0.255 1.255 18 C 0.077 3.923 19 C -0.133 4.133 20 C -0.054 4.054 21 Cl -0.070 7.070 22 C -0.089 4.089 23 C -0.107 4.107 24 C 0.097 3.903 25 O -0.306 6.306 26 H 0.103 0.897 27 H 0.081 0.919 28 H 0.077 0.923 29 H 0.104 0.896 30 H 0.129 0.871 31 H 0.116 0.884 32 H 0.119 0.881 33 H 0.271 0.729 34 H 0.144 0.856 35 H 0.171 0.829 36 H 0.178 0.822 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.610 -2.163 -21.284 24.833 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.016 3.984 3 H 0.095 0.905 4 C -0.060 4.060 5 N -0.282 5.282 6 C 0.324 3.676 7 O -0.406 6.406 8 C -0.274 4.274 9 S 0.082 5.918 10 C -0.693 4.693 11 H 0.106 0.894 12 C -0.190 4.190 13 N -0.548 5.548 14 Si 0.820 3.180 15 H -0.194 1.194 16 H -0.205 1.205 17 H -0.178 1.178 18 C -0.018 4.018 19 C -0.154 4.154 20 C -0.081 4.081 21 Cl -0.041 7.041 22 C -0.108 4.108 23 C -0.125 4.125 24 C 0.049 3.951 25 O -0.221 6.221 26 H 0.121 0.879 27 H 0.100 0.900 28 H 0.096 0.904 29 H 0.122 0.878 30 H 0.147 0.853 31 H 0.134 0.866 32 H 0.137 0.863 33 H 0.080 0.920 34 H 0.161 0.839 35 H 0.188 0.812 36 H 0.195 0.805 Dipole moment (debyes) X Y Z Total from point charges -10.722 -2.161 -21.349 23.988 hybrid contribution -0.861 0.126 1.606 1.827 sum -11.583 -2.035 -19.743 22.980 Atomic orbital electron populations 1.21810 0.87804 1.04748 1.05048 1.23068 0.98329 0.94853 0.82151 0.90510 1.23205 0.76158 1.04581 1.02094 1.45839 1.08599 1.67736 1.06030 1.20467 0.86694 0.74972 0.85422 1.90582 1.15908 1.48692 1.85388 1.23375 1.03570 1.07074 0.93382 1.85688 1.11154 1.95807 0.99144 1.23195 0.95076 1.58102 0.92944 0.89434 1.26123 0.96786 0.93766 1.02333 1.70181 1.11415 1.47605 1.25613 0.84953 0.78129 0.78625 0.76290 1.19366 1.20545 1.17847 1.18005 0.93225 1.05333 0.85204 1.21533 0.94363 1.00295 0.99183 1.20799 0.86140 1.06388 0.94779 1.98358 1.14440 1.92799 1.98532 1.21150 0.92610 0.99171 0.97889 1.20705 0.93959 1.02126 0.95748 1.18745 0.83768 1.00492 0.92057 1.86053 1.19290 1.73586 1.43143 0.87865 0.90020 0.90421 0.87797 0.85348 0.86634 0.86289 0.91985 0.83867 0.81190 0.80504 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.21 9.58 71.98 0.69 -0.52 16 2 C 0.07 1.17 3.58 30.77 0.11 1.28 16 3 H 0.08 1.32 8.14 -2.39 -0.02 1.30 16 4 C 0.06 1.16 5.69 86.41 0.49 1.65 16 5 N -0.56 -16.38 3.01 -627.72 -1.89 -18.27 16 6 C 0.53 20.13 7.60 87.66 0.67 20.80 16 7 O -0.53 -24.38 12.74 -3.06 -0.04 -24.42 16 8 C -0.12 -4.66 4.63 71.24 0.33 -4.33 16 9 S -0.15 -7.82 20.58 -56.49 -1.16 -8.98 16 10 C -0.55 -29.99 9.50 67.95 0.65 -29.35 16 11 H 0.09 4.39 7.80 -2.91 -0.02 4.37 16 12 C 0.01 0.82 5.49 84.86 0.47 1.29 16 13 N -0.91 -55.11 13.22 21.65 0.29 -54.82 16 14 Si 1.00 42.28 29.55 68.60 2.03 44.31 16 15 H -0.27 -10.95 7.11 99.48 0.71 -10.24 16 16 H -0.28 -11.68 7.11 99.48 0.71 -10.98 16 17 H -0.25 -9.98 7.11 99.48 0.71 -9.27 16 18 C 0.08 2.30 6.32 38.06 0.24 2.54 16 19 C -0.13 -4.39 8.73 22.40 0.20 -4.19 16 20 C -0.05 -1.45 6.32 22.33 0.14 -1.31 16 21 Cl -0.07 -1.85 28.95 -2.72 -0.08 -1.93 16 22 C -0.09 -1.75 9.81 22.29 0.22 -1.53 16 23 C -0.11 -1.97 9.97 22.37 0.22 -1.75 16 24 C 0.10 2.29 6.51 22.59 0.15 2.44 16 25 O -0.31 -6.13 9.97 -92.82 -0.93 -7.06 16 26 H 0.10 0.57 8.14 -2.39 -0.02 0.55 16 27 H 0.08 0.64 8.14 -2.39 -0.02 0.62 16 28 H 0.08 0.63 8.14 -2.38 -0.02 0.61 16 29 H 0.10 1.73 8.14 -2.38 -0.02 1.71 16 30 H 0.13 2.01 6.44 -2.39 -0.02 1.99 16 31 H 0.12 3.85 8.08 -2.39 -0.02 3.83 16 32 H 0.12 3.91 7.63 -2.40 -0.02 3.89 16 33 H 0.27 15.25 8.31 -92.71 -0.77 14.48 16 34 H 0.14 5.78 5.16 -4.36 -0.02 5.76 16 35 H 0.17 2.22 8.06 -2.91 -0.02 2.20 16 36 H 0.18 2.04 8.06 -2.91 -0.02 2.02 16 Total: -1.00 -75.20 333.35 3.89 -71.31 By element: Atomic # 1 Polarization: 11.74 SS G_CDS: 1.11 Total: 12.85 kcal Atomic # 6 Polarization: -17.55 SS G_CDS: 4.57 Total: -12.98 kcal Atomic # 7 Polarization: -71.49 SS G_CDS: -1.61 Total: -73.10 kcal Atomic # 8 Polarization: -30.51 SS G_CDS: -0.96 Total: -31.48 kcal Atomic # 14 Polarization: 42.28 SS G_CDS: 2.03 Total: 44.31 kcal Atomic # 16 Polarization: -7.82 SS G_CDS: -1.16 Total: -8.98 kcal Atomic # 17 Polarization: -1.85 SS G_CDS: -0.08 Total: -1.93 kcal Total: -75.20 3.89 -71.31 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000173605501.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.471 kcal (2) G-P(sol) polarization free energy of solvation -75.201 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.730 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.890 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.311 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.840 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds