Wall clock time and date at job start Tue Mar 31 2020 15:02:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31638 * 1 3 3 Si 1.86800 * 119.99914 * 2 1 4 4 H 1.48504 * 109.46932 * 270.00334 * 3 2 1 5 5 H 1.48500 * 109.47249 * 29.99724 * 3 2 1 6 6 H 1.48497 * 109.47439 * 150.00128 * 3 2 1 7 7 C 1.38799 * 120.00154 * 179.97438 * 2 1 3 8 8 H 1.07994 * 119.99836 * 180.02562 * 7 2 1 9 9 S 1.76201 * 119.99687 * 359.97438 * 7 2 1 10 10 C 1.81004 * 99.99642 * 179.97438 * 9 7 2 11 11 C 1.50699 * 109.46861 * 179.97438 * 10 9 7 12 12 O 1.21296 * 120.00219 * 0.02562 * 11 10 9 13 13 N 1.34777 * 119.99895 * 180.02562 * 11 10 9 14 14 C 1.40105 * 119.99956 * 185.27671 * 13 11 10 15 15 C 1.39368 * 119.81439 * 33.47681 * 14 13 11 16 16 C 1.37731 * 120.39150 * 180.02562 * 15 14 13 17 17 C 1.38843 * 119.92593 * 359.97438 * 16 15 14 18 18 N 1.38227 * 133.96798 * 180.33426 * 17 16 15 19 19 H 0.97002 * 126.35460 * 359.95409 * 18 17 16 20 20 C 1.35996 * 107.29489 * 180.10013 * 18 17 16 21 21 C 1.50699 * 124.94868 * 179.83788 * 20 18 17 22 22 F 1.39905 * 109.47346 * 299.73197 * 21 20 18 23 23 F 1.39901 * 109.46585 * 59.72720 * 21 20 18 24 24 N 1.30119 * 110.11018 * 359.58274 * 20 18 17 25 25 C 1.35803 * 109.65832 * 0.26226 * 24 20 18 26 26 C 1.38188 * 119.81153 * 213.44638 * 14 13 11 27 27 H 0.97001 * 120.00077 * 359.97438 * 1 2 3 28 28 H 1.09002 * 109.46677 * 60.00503 * 10 9 7 29 29 H 1.08995 * 109.47141 * 300.00114 * 10 9 7 30 30 H 0.97003 * 120.00077 * 5.27793 * 13 11 10 31 31 H 1.07994 * 119.79759 * 0.02562 * 15 14 13 32 32 H 1.08003 * 120.03443 * 179.97438 * 16 15 14 33 33 H 1.08995 * 109.47302 * 179.72652 * 21 20 18 34 34 H 1.07994 * 120.14253 * 359.97438 * 26 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3164 0.0000 0.0000 3 14 2.2504 1.6177 0.0000 4 1 2.4978 2.0464 -1.4001 5 1 1.4478 2.6527 0.7000 6 1 3.5479 1.4403 0.7000 7 6 2.0104 -1.2020 0.0005 8 1 3.0904 -1.2020 0.0010 9 16 1.1294 -2.7279 0.0019 10 6 2.5160 -3.8914 0.0013 11 6 1.9875 -5.3026 0.0030 12 8 0.7911 -5.5023 0.0040 13 7 2.8443 -6.3430 0.0035 14 6 2.3568 -7.6520 -0.1066 15 6 1.2198 -7.9059 -0.8713 16 6 0.7300 -9.1880 -0.9872 17 6 1.3713 -10.2356 -0.3398 18 7 1.1452 -11.5969 -0.2606 19 1 0.4262 -12.0864 -0.6901 20 6 2.1159 -12.1224 0.5338 21 6 2.2439 -13.5810 0.8904 22 9 1.0904 -13.9999 1.5621 23 9 2.4027 -14.3343 -0.2778 24 7 2.9212 -11.1833 0.9370 25 6 2.5183 -9.9884 0.4327 26 6 3.0067 -8.6839 0.5433 27 1 -0.4850 0.8401 0.0004 28 1 3.1252 -3.7309 0.8909 29 1 3.1239 -3.7317 -0.8891 30 1 3.7984 -6.1856 0.0800 31 1 0.7198 -7.0926 -1.3760 32 1 -0.1518 -9.3782 -1.5811 33 1 3.1114 -13.7228 1.5348 34 1 3.8880 -8.4830 1.1342 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000179825304.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:02:47 Heat of formation + Delta-G solvation = -60.576828 kcal Electronic energy + Delta-G solvation = -23327.806458 eV Core-core repulsion = 19216.495170 eV Total energy + Delta-G solvation = -4111.311287 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 327.059 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -49.70927 -47.71174 -42.49337 -40.02810 -37.30432 -34.31678 -33.51405 -32.48252 -30.71328 -30.25967 -28.76951 -26.75724 -25.53228 -22.94449 -22.77481 -21.72241 -20.48391 -18.78756 -18.41880 -18.00046 -17.98404 -17.37297 -17.28291 -16.50598 -15.71088 -15.51316 -15.21437 -14.85080 -14.55867 -14.50317 -14.18452 -14.12285 -14.05751 -13.46420 -13.42278 -13.21749 -12.70288 -12.55177 -12.18364 -12.06060 -11.83868 -11.16056 -11.10602 -11.07730 -10.81837 -10.54017 -10.11634 -9.88885 -9.61750 -9.11736 -8.53376 -8.33370 -8.03000 -6.57865 -6.27309 -3.98939 0.50468 1.16564 2.17069 2.20823 2.66422 2.82607 2.90206 3.19281 3.23555 3.27576 3.45605 3.54474 3.63149 4.05009 4.14507 4.25689 4.29397 4.67876 4.85693 4.94505 5.01044 5.08314 5.11613 5.25191 5.55416 5.66502 5.75392 6.00260 6.02268 6.09223 6.15115 6.22952 6.75408 6.79230 7.27889 7.41985 7.54649 8.29552 8.31809 9.18301 10.80052 Molecular weight = 327.06amu Principal moments of inertia in cm(-1) A = 0.051986 B = 0.001930 C = 0.001900 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 538.480391 B =14505.218945 C =14736.799589 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.867 5.867 2 C 0.074 3.926 3 Si 0.920 3.080 4 H -0.277 1.277 5 H -0.282 1.282 6 H -0.272 1.272 7 C -0.537 4.537 8 H 0.074 0.926 9 S -0.057 6.057 10 C -0.154 4.154 11 C 0.533 3.467 12 O -0.496 6.496 13 N -0.679 5.679 14 C 0.161 3.839 15 C -0.082 4.082 16 C -0.096 4.096 17 C 0.048 3.952 18 N -0.578 5.578 19 H 0.427 0.573 20 C 0.198 3.802 21 C 0.359 3.641 22 F -0.188 7.188 23 F -0.189 7.189 24 N -0.453 5.453 25 C 0.063 3.937 26 C -0.098 4.098 27 H 0.269 0.731 28 H 0.095 0.905 29 H 0.096 0.904 30 H 0.412 0.588 31 H 0.152 0.848 32 H 0.132 0.868 33 H 0.154 0.846 34 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.520 -25.923 -0.811 26.742 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.502 5.502 2 C -0.136 4.136 3 Si 0.746 3.254 4 H -0.202 1.202 5 H -0.207 1.207 6 H -0.197 1.197 7 C -0.685 4.685 8 H 0.092 0.908 9 S 0.170 5.830 10 C -0.305 4.305 11 C 0.321 3.679 12 O -0.368 6.368 13 N -0.326 5.326 14 C 0.064 3.936 15 C -0.104 4.104 16 C -0.117 4.117 17 C -0.062 4.062 18 N -0.190 5.190 19 H 0.266 0.734 20 C -0.070 4.070 21 C 0.303 3.697 22 F -0.169 7.169 23 F -0.170 7.170 24 N -0.174 5.174 25 C -0.056 4.056 26 C -0.121 4.121 27 H 0.079 0.921 28 H 0.113 0.887 29 H 0.114 0.886 30 H 0.248 0.752 31 H 0.169 0.831 32 H 0.150 0.850 33 H 0.171 0.829 34 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 5.072 -26.145 -0.291 26.634 hybrid contribution 1.255 1.120 -0.700 1.822 sum 6.327 -25.024 -0.991 25.831 Atomic orbital electron populations 1.70013 1.05960 1.27567 1.46681 1.25002 0.95049 0.99095 0.94437 0.86149 0.79412 0.81459 0.78379 1.20239 1.20736 1.19652 1.22852 0.94939 0.91481 1.59206 0.90787 1.85414 1.04460 0.96402 1.96772 1.23550 1.07022 0.94437 1.05471 1.20558 0.86466 0.86261 0.74621 1.90722 1.15199 1.85227 1.45648 1.43699 1.11113 1.03422 1.74368 1.17400 0.95679 0.84203 0.96330 1.21132 0.95675 0.96357 0.97200 1.19855 1.00708 0.89775 1.01371 1.18924 0.99669 0.83730 1.03847 1.42743 1.26891 1.06751 1.42600 0.73381 1.23566 0.90007 0.96507 0.96898 1.19667 0.88418 0.80204 0.81373 1.93079 1.53108 1.90620 1.80103 1.93072 1.95856 1.77158 1.50895 1.70174 1.25851 0.97668 1.23745 1.18489 0.94916 0.92297 0.99933 1.19799 1.02667 0.88511 1.01099 0.92113 0.88722 0.88607 0.75200 0.83092 0.85016 0.82919 0.84504 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -25.56 13.22 55.49 0.73 -24.83 16 2 C 0.07 2.05 5.49 -17.43 -0.10 1.95 16 3 Si 0.92 20.93 29.55 -169.99 -5.02 15.90 16 4 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 5 H -0.28 -6.34 7.11 56.52 0.40 -5.93 16 6 H -0.27 -6.00 7.11 56.52 0.40 -5.60 16 7 C -0.54 -14.78 9.50 30.94 0.29 -14.48 16 8 H 0.07 1.92 7.80 -52.49 -0.41 1.51 16 9 S -0.06 -1.47 20.57 -107.50 -2.21 -3.69 16 10 C -0.15 -2.87 6.16 36.01 0.22 -2.65 16 11 C 0.53 9.14 7.58 -10.99 -0.08 9.06 16 12 O -0.50 -10.25 13.54 5.54 0.08 -10.17 16 13 N -0.68 -8.64 5.34 -9.86 -0.05 -8.69 16 14 C 0.16 2.08 6.27 -83.67 -0.52 1.56 16 15 C -0.08 -1.09 8.63 -39.35 -0.34 -1.43 16 16 C -0.10 -1.07 10.06 -39.54 -0.40 -1.47 16 17 C 0.05 0.55 7.30 -83.91 -0.61 -0.06 16 18 N -0.58 -5.21 6.24 -7.97 -0.05 -5.26 16 19 H 0.43 2.56 8.96 -40.82 -0.37 2.20 16 20 C 0.20 1.88 7.51 -154.86 -1.16 0.72 16 21 C 0.36 2.26 5.86 36.00 0.21 2.47 16 22 F -0.19 -1.38 17.32 2.25 0.04 -1.34 16 23 F -0.19 -1.33 17.32 2.25 0.04 -1.29 16 24 N -0.45 -5.37 11.27 -8.25 -0.09 -5.47 16 25 C 0.06 0.79 7.22 -84.71 -0.61 0.18 16 26 C -0.10 -1.17 10.00 -39.04 -0.39 -1.56 16 27 H 0.27 7.38 8.31 -40.82 -0.34 7.04 16 28 H 0.09 1.61 8.14 -51.92 -0.42 1.19 16 29 H 0.10 1.61 8.14 -51.92 -0.42 1.19 16 30 H 0.41 3.80 8.82 -40.82 -0.36 3.44 16 31 H 0.15 2.21 6.40 -52.49 -0.34 1.87 16 32 H 0.13 1.14 8.06 -52.48 -0.42 0.72 16 33 H 0.15 0.52 8.14 -51.93 -0.42 0.10 16 34 H 0.14 1.37 8.06 -52.49 -0.42 0.95 16 LS Contribution 328.12 15.07 4.94 4.94 Total: -1.00 -34.88 328.12 -7.81 -42.69 By element: Atomic # 1 Polarization: 5.62 SS G_CDS: -2.72 Total: 2.90 kcal Atomic # 6 Polarization: -2.22 SS G_CDS: -3.49 Total: -5.71 kcal Atomic # 7 Polarization: -44.79 SS G_CDS: 0.54 Total: -44.25 kcal Atomic # 8 Polarization: -10.25 SS G_CDS: 0.08 Total: -10.17 kcal Atomic # 9 Polarization: -2.70 SS G_CDS: 0.08 Total: -2.63 kcal Atomic # 14 Polarization: 20.93 SS G_CDS: -5.02 Total: 15.90 kcal Atomic # 16 Polarization: -1.47 SS G_CDS: -2.21 Total: -3.69 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -34.88 -7.81 -42.69 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000179825304.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.885 kcal (2) G-P(sol) polarization free energy of solvation -34.880 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.766 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.811 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.691 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.577 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds