Wall clock time and date at job start Tue Mar 31 2020 15:52:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.38172 * 120.02151 * 2 1 4 4 C 1.38321 * 120.04529 * 179.97438 * 3 2 1 5 5 Br 1.89100 * 119.95461 * 180.02562 * 4 3 2 6 6 C 1.38364 * 120.09101 * 0.02562 * 4 3 2 7 7 C 1.38121 * 120.04879 * 359.97438 * 6 4 3 8 8 C 1.50698 * 120.02508 * 180.02562 * 7 6 4 9 9 N 1.46900 * 109.47506 * 105.41594 * 8 7 6 10 10 C 1.46903 * 110.99959 * 288.48877 * 9 8 7 11 11 C 1.46896 * 111.00291 * 164.53337 * 9 8 7 12 12 H 1.08995 * 109.47364 * 59.99822 * 11 9 8 13 13 C 1.53006 * 109.46956 * 300.00343 * 11 9 8 14 14 C 1.50693 * 109.47247 * 180.02562 * 11 9 8 15 15 H 1.08005 * 120.00444 * 35.16052 * 14 11 9 16 16 C 1.37882 * 119.99918 * 215.15707 * 14 11 9 17 17 N 1.31518 * 119.99972 * 179.24018 * 16 14 11 18 18 Si 1.86793 * 120.00001 * 359.24045 * 16 14 11 19 19 H 1.48500 * 109.47250 * 86.75477 * 18 16 14 20 20 H 1.48505 * 109.46984 * 206.75399 * 18 16 14 21 21 H 1.48502 * 109.47335 * 326.75303 * 18 16 14 22 22 C 1.38702 * 120.02628 * 179.97438 * 2 1 3 23 23 O 1.35914 * 120.04683 * 0.03954 * 22 2 1 24 24 H 1.08996 * 109.47150 * 89.99705 * 1 2 3 25 25 H 1.09002 * 109.46788 * 209.99825 * 1 2 3 26 26 H 1.09005 * 109.47334 * 329.99691 * 1 2 3 27 27 H 1.07995 * 119.97427 * 359.70150 * 3 2 1 28 28 H 1.08007 * 119.97905 * 180.02562 * 6 4 3 29 29 H 1.09000 * 109.47180 * 225.41645 * 8 7 6 30 30 H 1.09002 * 109.47127 * 345.41573 * 8 7 6 31 31 H 1.08996 * 109.47062 * 54.39238 * 10 9 8 32 32 H 1.08999 * 109.46864 * 174.39298 * 10 9 8 33 33 H 1.09001 * 109.47185 * 294.38993 * 10 9 8 34 34 H 1.08994 * 109.47128 * 66.37934 * 13 11 9 35 35 H 1.08996 * 109.47004 * 186.38432 * 13 11 9 36 36 H 1.09001 * 109.46654 * 306.37734 * 13 11 9 37 37 H 0.97003 * 119.99942 * 180.02562 * 17 16 14 38 38 H 0.96692 * 113.99747 * 85.32412 * 23 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1963 0.0000 4 6 3.5815 1.1969 0.0005 5 35 4.5250 2.8357 0.0013 6 6 4.2757 0.0000 0.0005 7 6 3.5885 -1.1981 0.0005 8 6 4.3451 -2.5013 0.0011 9 7 4.2721 -3.1095 1.3364 10 6 5.0910 -2.3625 2.3005 11 6 4.6682 -4.5234 1.2933 12 1 5.6923 -4.6029 0.9286 13 6 3.7319 -5.2869 0.3546 14 6 4.5804 -5.1120 2.6778 15 1 3.8027 -4.7885 3.3538 16 6 5.4928 -6.0637 3.0814 17 7 5.4252 -6.5666 4.2948 18 14 6.8248 -6.6388 1.9049 19 1 7.9970 -5.7325 2.0030 20 1 7.2363 -8.0207 2.2604 21 1 6.2999 -6.6206 0.5158 22 6 2.2010 -1.2009 0.0005 23 8 1.5229 -2.3788 0.0003 24 1 -0.3633 0.0001 -1.0276 25 1 -0.3633 -0.8900 0.5138 26 1 -0.3634 0.8900 0.5139 27 1 1.6582 2.1316 -0.0049 28 1 5.3558 0.0026 0.0014 29 1 3.9040 -3.1779 -0.7308 30 1 5.3878 -2.3163 -0.2573 31 1 4.7966 -1.3130 2.2910 32 1 4.9413 -2.7729 3.2991 33 1 6.1426 -2.4473 2.0267 34 1 3.8778 -4.9374 -0.6674 35 1 3.9528 -6.3529 0.4092 36 1 2.6979 -5.1144 0.6535 37 1 6.0673 -7.2358 4.5788 38 1 1.2649 -2.6838 -0.8803 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000180056660.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:52:32 Heat of formation + Delta-G solvation = -12.556747 kcal Electronic energy + Delta-G solvation = -20396.619433 eV Core-core repulsion = 17285.546920 eV Total energy + Delta-G solvation = -3111.072513 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 327.058 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.14022 -37.06930 -36.62483 -33.40879 -32.48173 -31.71967 -29.95216 -29.01980 -26.94850 -26.81126 -24.70142 -23.53893 -21.51770 -20.80505 -19.20890 -18.19216 -16.97830 -16.32191 -15.75109 -15.30159 -14.57049 -14.35225 -13.94935 -13.82205 -13.36944 -13.25277 -12.80665 -12.55252 -12.47846 -12.42110 -12.35551 -11.95201 -11.60083 -11.33896 -11.06428 -10.88482 -10.62458 -10.51630 -10.42078 -10.37572 -10.22281 -10.10510 -9.75609 -9.12135 -8.71163 -8.57204 -8.35914 -7.27318 -6.07593 -4.05678 1.02762 1.21682 1.56612 3.24858 3.34330 3.35670 3.42591 4.27461 4.39631 4.64071 4.73584 4.95011 5.06271 5.25481 5.30521 5.40678 5.49388 5.55960 5.71861 5.74050 5.95656 6.05514 6.13740 6.16403 6.21348 6.32517 6.42531 6.55660 6.60663 6.66916 6.70474 6.87313 7.04986 7.33780 7.63172 7.80664 8.02611 8.13315 8.67769 9.04307 9.56001 11.05551 Molecular weight = 327.06amu Principal moments of inertia in cm(-1) A = 0.018102 B = 0.003772 C = 0.003335 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1546.456232 B = 7422.170503 C = 8394.544851 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.115 4.115 3 C -0.085 4.085 4 C -0.098 4.098 5 Br -0.061 7.061 6 C -0.079 4.079 7 C -0.079 4.079 8 C 0.089 3.911 9 N -0.515 5.515 10 C 0.040 3.960 11 C 0.181 3.819 12 H -0.003 1.003 13 C -0.132 4.132 14 C -0.497 4.497 15 H 0.081 0.919 16 C 0.071 3.929 17 N -0.898 5.898 18 Si 0.871 3.129 19 H -0.279 1.279 20 H -0.288 1.288 21 H -0.266 1.266 22 C 0.150 3.850 23 O -0.470 6.470 24 H 0.067 0.933 25 H 0.078 0.922 26 H 0.066 0.934 27 H 0.130 0.870 28 H 0.131 0.869 29 H 0.085 0.915 30 H 0.030 0.970 31 H 0.042 0.958 32 H 0.083 0.917 33 H 0.009 0.991 34 H 0.018 0.982 35 H 0.047 0.953 36 H 0.059 0.941 37 H 0.263 0.737 38 H 0.383 0.617 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.703 18.026 -13.134 23.021 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.117 4.117 3 C -0.105 4.105 4 C -0.177 4.177 5 Br 0.024 6.976 6 C -0.100 4.100 7 C -0.081 4.081 8 C -0.039 4.039 9 N -0.240 5.240 10 C -0.108 4.108 11 C 0.075 3.925 12 H 0.015 0.985 13 C -0.190 4.190 14 C -0.536 4.536 15 H 0.099 0.901 16 C -0.131 4.131 17 N -0.536 5.536 18 Si 0.699 3.301 19 H -0.205 1.205 20 H -0.214 1.214 21 H -0.190 1.190 22 C 0.104 3.896 23 O -0.279 6.279 24 H 0.086 0.914 25 H 0.096 0.904 26 H 0.085 0.915 27 H 0.148 0.852 28 H 0.149 0.851 29 H 0.103 0.897 30 H 0.048 0.952 31 H 0.061 0.939 32 H 0.102 0.898 33 H 0.028 0.972 34 H 0.037 0.963 35 H 0.066 0.934 36 H 0.078 0.922 37 H 0.073 0.927 38 H 0.239 0.761 Dipole moment (debyes) X Y Z Total from point charges -5.669 18.522 -12.226 22.906 hybrid contribution 1.489 -0.769 -1.231 2.079 sum -4.180 17.753 -13.457 22.666 Atomic orbital electron populations 1.20671 0.90202 1.03572 1.02182 1.20224 0.96882 0.92150 1.02438 1.20761 0.91761 0.97972 1.00045 1.21610 0.94542 0.91308 1.10234 1.96668 1.75679 1.27327 1.97877 1.20918 1.00100 0.90018 0.98951 1.20322 0.93317 0.95388 0.99053 1.21005 0.96356 0.91781 0.94806 1.62144 1.54885 1.03497 1.03443 1.22178 0.93463 0.96271 0.98869 1.19715 0.91965 0.83844 0.96987 0.98496 1.21989 1.01496 0.99638 0.95873 1.20882 1.14648 1.21160 0.96907 0.90086 1.24988 0.97137 0.96182 0.94755 1.69890 1.36943 1.29351 1.17443 0.86961 0.82701 0.78178 0.82271 1.20509 1.21419 1.19026 1.18151 0.89163 0.85027 0.97305 1.84968 1.74790 1.35711 1.32451 0.91385 0.90356 0.91507 0.85173 0.85121 0.89731 0.95160 0.93907 0.89798 0.97238 0.96301 0.93409 0.92236 0.92657 0.76147 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.03 9.79 36.00 0.35 -0.68 16 2 C -0.12 -1.39 5.89 -104.48 -0.62 -2.01 16 3 C -0.09 -1.00 9.44 -39.58 -0.37 -1.37 16 4 C -0.10 -1.23 6.22 -39.50 -0.25 -1.48 16 5 Br -0.06 -0.68 33.70 -68.01 -2.29 -2.97 16 6 C -0.08 -1.09 8.78 -39.58 -0.35 -1.44 16 7 C -0.08 -1.18 4.66 -104.48 -0.49 -1.66 16 8 C 0.09 1.50 4.57 -4.98 -0.02 1.47 16 9 N -0.52 -10.73 4.57 -237.73 -1.09 -11.82 16 10 C 0.04 0.83 9.07 60.07 0.54 1.38 16 11 C 0.18 4.24 1.65 -68.87 -0.11 4.12 16 12 H 0.00 -0.06 5.51 -51.93 -0.29 -0.35 16 13 C -0.13 -2.76 8.74 37.16 0.32 -2.44 16 14 C -0.50 -13.77 7.49 -34.44 -0.26 -14.03 16 15 H 0.08 2.51 8.04 -52.48 -0.42 2.09 16 16 C 0.07 2.02 5.47 -17.82 -0.10 1.93 16 17 N -0.90 -27.18 13.96 55.43 0.77 -26.40 16 18 Si 0.87 21.36 26.64 -169.99 -4.53 16.83 16 19 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 20 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 21 H -0.27 -6.22 6.81 56.52 0.38 -5.83 16 22 C 0.15 2.09 6.65 -39.22 -0.26 1.83 16 23 O -0.47 -6.47 11.89 -19.47 -0.23 -6.70 16 24 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 25 H 0.08 0.80 7.53 -51.93 -0.39 0.41 16 26 H 0.07 0.55 8.09 -51.93 -0.42 0.13 16 27 H 0.13 1.26 8.06 -52.49 -0.42 0.84 16 28 H 0.13 1.71 8.00 -52.48 -0.42 1.29 16 29 H 0.08 1.36 5.64 -51.93 -0.29 1.06 16 30 H 0.03 0.50 7.86 -51.93 -0.41 0.09 16 31 H 0.04 0.79 6.84 -51.93 -0.36 0.44 16 32 H 0.08 1.94 7.03 -51.93 -0.37 1.58 16 33 H 0.01 0.19 8.14 -51.93 -0.42 -0.24 16 34 H 0.02 0.33 6.44 -51.93 -0.33 0.00 16 35 H 0.05 1.03 7.78 -51.93 -0.40 0.63 16 36 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 37 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 38 H 0.38 3.39 9.06 45.56 0.41 3.80 16 LS Contribution 328.82 15.07 4.96 4.96 Total: -1.00 -30.94 328.82 -8.54 -39.48 By element: Atomic # 1 Polarization: 5.52 SS G_CDS: -4.53 Total: 0.99 kcal Atomic # 6 Polarization: -12.76 SS G_CDS: -1.60 Total: -14.36 kcal Atomic # 7 Polarization: -37.91 SS G_CDS: -0.31 Total: -38.22 kcal Atomic # 8 Polarization: -6.47 SS G_CDS: -0.23 Total: -6.70 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -4.53 Total: 16.83 kcal Atomic # 35 Polarization: -0.68 SS G_CDS: -2.29 Total: -2.97 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -30.94 -8.54 -39.48 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000180056660.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.924 kcal (2) G-P(sol) polarization free energy of solvation -30.942 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.018 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.539 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.481 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.557 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds