Wall clock time and date at job start Tue Mar 31 2020 15:52:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.38172 * 120.02151 * 2 1 4 4 C 1.38321 * 120.04529 * 179.97438 * 3 2 1 5 5 Br 1.89100 * 119.95461 * 180.02562 * 4 3 2 6 6 C 1.38364 * 120.09101 * 0.02562 * 4 3 2 7 7 C 1.38121 * 120.04879 * 359.97438 * 6 4 3 8 8 C 1.50698 * 120.02508 * 180.02562 * 7 6 4 9 9 N 1.46900 * 109.47506 * 105.41594 * 8 7 6 10 10 C 1.46903 * 110.99959 * 288.48877 * 9 8 7 11 11 C 1.46896 * 111.00291 * 164.53337 * 9 8 7 12 12 H 1.08995 * 109.47364 * 59.99822 * 11 9 8 13 13 C 1.53006 * 109.46956 * 300.00343 * 11 9 8 14 14 C 1.50693 * 109.47247 * 180.02562 * 11 9 8 15 15 H 1.08005 * 120.00444 * 35.16052 * 14 11 9 16 16 C 1.37882 * 119.99918 * 215.15707 * 14 11 9 17 17 N 1.31518 * 119.99972 * 179.24018 * 16 14 11 18 18 Si 1.86793 * 120.00001 * 359.24045 * 16 14 11 19 19 H 1.48500 * 109.47250 * 86.75477 * 18 16 14 20 20 H 1.48505 * 109.46984 * 206.75399 * 18 16 14 21 21 H 1.48502 * 109.47335 * 326.75303 * 18 16 14 22 22 C 1.38702 * 120.02628 * 179.97438 * 2 1 3 23 23 O 1.35914 * 120.04683 * 0.03954 * 22 2 1 24 24 H 1.08996 * 109.47150 * 89.99705 * 1 2 3 25 25 H 1.09002 * 109.46788 * 209.99825 * 1 2 3 26 26 H 1.09005 * 109.47334 * 329.99691 * 1 2 3 27 27 H 1.07995 * 119.97427 * 359.70150 * 3 2 1 28 28 H 1.08007 * 119.97905 * 180.02562 * 6 4 3 29 29 H 1.09000 * 109.47180 * 225.41645 * 8 7 6 30 30 H 1.09002 * 109.47127 * 345.41573 * 8 7 6 31 31 H 1.08996 * 109.47062 * 54.39238 * 10 9 8 32 32 H 1.08999 * 109.46864 * 174.39298 * 10 9 8 33 33 H 1.09001 * 109.47185 * 294.38993 * 10 9 8 34 34 H 1.08994 * 109.47128 * 66.37934 * 13 11 9 35 35 H 1.08996 * 109.47004 * 186.38432 * 13 11 9 36 36 H 1.09001 * 109.46654 * 306.37734 * 13 11 9 37 37 H 0.97003 * 119.99942 * 180.02562 * 17 16 14 38 38 H 0.96692 * 113.99747 * 85.32412 * 23 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1963 0.0000 4 6 3.5815 1.1969 0.0005 5 35 4.5250 2.8357 0.0013 6 6 4.2757 0.0000 0.0005 7 6 3.5885 -1.1981 0.0005 8 6 4.3451 -2.5013 0.0011 9 7 4.2721 -3.1095 1.3364 10 6 5.0910 -2.3625 2.3005 11 6 4.6682 -4.5234 1.2933 12 1 5.6923 -4.6029 0.9286 13 6 3.7319 -5.2869 0.3546 14 6 4.5804 -5.1120 2.6778 15 1 3.8027 -4.7885 3.3538 16 6 5.4928 -6.0637 3.0814 17 7 5.4252 -6.5666 4.2948 18 14 6.8248 -6.6388 1.9049 19 1 7.9970 -5.7325 2.0030 20 1 7.2363 -8.0207 2.2604 21 1 6.2999 -6.6206 0.5158 22 6 2.2010 -1.2009 0.0005 23 8 1.5229 -2.3788 0.0003 24 1 -0.3633 0.0001 -1.0276 25 1 -0.3633 -0.8900 0.5138 26 1 -0.3634 0.8900 0.5139 27 1 1.6582 2.1316 -0.0049 28 1 5.3558 0.0026 0.0014 29 1 3.9040 -3.1779 -0.7308 30 1 5.3878 -2.3163 -0.2573 31 1 4.7966 -1.3130 2.2910 32 1 4.9413 -2.7729 3.2991 33 1 6.1426 -2.4473 2.0267 34 1 3.8778 -4.9374 -0.6674 35 1 3.9528 -6.3529 0.4092 36 1 2.6979 -5.1144 0.6535 37 1 6.0673 -7.2358 4.5788 38 1 1.2649 -2.6838 -0.8803 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000180056660.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:52:31 Heat of formation + Delta-G solvation = -33.670745 kcal Electronic energy + Delta-G solvation = -20397.535005 eV Core-core repulsion = 17285.546920 eV Total energy + Delta-G solvation = -3111.988085 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 327.058 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.16984 -38.66938 -37.62296 -34.97195 -33.85337 -32.99054 -31.58810 -30.10007 -28.35056 -27.77871 -26.55257 -25.07859 -22.55204 -22.01636 -20.90601 -19.20454 -19.05134 -17.39095 -16.90943 -16.76985 -16.03329 -15.81116 -15.48680 -15.06566 -14.58671 -14.45755 -14.31453 -14.18678 -13.75025 -13.42678 -13.34660 -13.10257 -13.06856 -12.87223 -12.60232 -12.55469 -12.26882 -12.10062 -11.87282 -11.77738 -11.44652 -11.33373 -11.22827 -11.04930 -10.72924 -9.73254 -9.33819 -8.92188 -8.26880 -6.29381 0.05161 0.22331 0.62851 1.31448 1.33847 1.44443 2.33534 2.42842 3.05114 3.34196 3.43669 3.71813 3.77879 4.12075 4.28630 4.33854 4.46071 4.48281 4.53750 4.61775 4.75866 4.81646 4.84854 4.87777 4.91935 4.96110 5.14344 5.16694 5.20422 5.26695 5.31120 5.50720 5.53320 5.72770 5.73928 6.11866 6.39756 6.72192 6.80409 6.97789 7.36389 8.90398 Molecular weight = 327.06amu Principal moments of inertia in cm(-1) A = 0.018102 B = 0.003772 C = 0.003335 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1546.456232 B = 7422.170503 C = 8394.544851 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C -0.116 4.116 3 C -0.080 4.080 4 C -0.106 4.106 5 Br -0.048 7.048 6 C -0.085 4.085 7 C -0.099 4.099 8 C 0.093 3.907 9 N -0.527 5.527 10 C 0.050 3.950 11 C 0.183 3.817 12 H -0.005 1.005 13 C -0.124 4.124 14 C -0.495 4.495 15 H 0.030 0.970 16 C 0.014 3.986 17 N -0.949 5.949 18 Si 0.936 3.064 19 H -0.274 1.274 20 H -0.286 1.286 21 H -0.242 1.242 22 C 0.141 3.859 23 O -0.489 6.489 24 H 0.089 0.911 25 H 0.067 0.933 26 H 0.080 0.920 27 H 0.153 0.847 28 H 0.133 0.867 29 H 0.094 0.906 30 H 0.036 0.964 31 H 0.062 0.938 32 H 0.046 0.954 33 H 0.011 0.989 34 H 0.056 0.944 35 H 0.038 0.962 36 H 0.053 0.947 37 H 0.265 0.735 38 H 0.402 0.598 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.865 19.468 -15.775 25.734 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.118 4.118 3 C -0.100 4.100 4 C -0.185 4.185 5 Br 0.037 6.963 6 C -0.105 4.105 7 C -0.101 4.101 8 C -0.034 4.034 9 N -0.251 5.251 10 C -0.099 4.099 11 C 0.075 3.925 12 H 0.013 0.987 13 C -0.182 4.182 14 C -0.533 4.533 15 H 0.049 0.951 16 C -0.184 4.184 17 N -0.590 5.590 18 Si 0.760 3.240 19 H -0.199 1.199 20 H -0.212 1.212 21 H -0.165 1.165 22 C 0.095 3.905 23 O -0.301 6.301 24 H 0.108 0.892 25 H 0.086 0.914 26 H 0.098 0.902 27 H 0.171 0.829 28 H 0.151 0.849 29 H 0.112 0.888 30 H 0.054 0.946 31 H 0.081 0.919 32 H 0.065 0.935 33 H 0.030 0.970 34 H 0.074 0.926 35 H 0.057 0.943 36 H 0.072 0.928 37 H 0.074 0.926 38 H 0.261 0.739 Dipole moment (debyes) X Y Z Total from point charges -5.850 19.983 -14.904 25.606 hybrid contribution 1.428 -1.083 -0.380 1.832 sum -4.422 18.900 -15.284 24.706 Atomic orbital electron populations 1.20709 0.88285 1.03679 1.03609 1.20491 0.98283 0.91536 1.01483 1.21070 0.91555 0.98818 0.98578 1.21744 0.95122 0.91553 1.10067 1.96681 1.75558 1.26192 1.97837 1.20958 1.00311 0.90164 0.99107 1.20177 0.93761 0.94738 1.01406 1.20996 0.97234 0.92873 0.92336 1.61994 1.54780 1.02450 1.05908 1.22022 0.93697 0.97094 0.97048 1.19604 0.92607 0.85567 0.94676 0.98706 1.21845 1.00344 0.98707 0.97317 1.21026 1.12942 1.20973 0.98390 0.95137 1.25816 0.99765 0.96408 0.96372 1.70051 1.38488 1.30625 1.19808 0.85917 0.79535 0.77555 0.80996 1.19946 1.21236 1.16515 1.18311 0.89027 0.85717 0.97434 1.84914 1.74782 1.35939 1.34415 0.89223 0.91450 0.90161 0.82916 0.84905 0.88773 0.94551 0.91909 0.93549 0.97039 0.92556 0.94302 0.92801 0.92628 0.73918 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.70 9.79 71.23 0.70 -1.01 16 2 C -0.12 -2.53 5.89 -19.77 -0.12 -2.65 16 3 C -0.08 -1.66 9.44 22.27 0.21 -1.45 16 4 C -0.11 -2.42 6.22 22.32 0.14 -2.28 16 5 Br -0.05 -0.97 33.70 -20.37 -0.69 -1.66 16 6 C -0.08 -2.18 8.78 22.27 0.20 -1.99 16 7 C -0.10 -2.79 4.66 -19.77 -0.09 -2.88 16 8 C 0.09 2.97 4.57 85.56 0.39 3.36 16 9 N -0.53 -21.72 4.57 -906.06 -4.14 -25.86 16 10 C 0.05 2.08 9.07 127.69 1.16 3.23 16 11 C 0.18 8.44 1.65 44.17 0.07 8.51 16 12 H 0.00 -0.21 5.51 -2.39 -0.01 -0.23 16 13 C -0.12 -4.98 8.74 71.98 0.63 -4.35 16 14 C -0.49 -28.24 7.49 25.60 0.19 -28.05 16 15 H 0.03 2.00 8.04 -2.91 -0.02 1.98 16 16 C 0.01 0.78 5.47 84.66 0.46 1.25 16 17 N -0.95 -59.55 13.96 21.45 0.30 -59.25 16 18 Si 0.94 43.97 26.64 68.60 1.83 45.80 16 19 H -0.27 -12.57 7.11 99.48 0.71 -11.87 16 20 H -0.29 -13.29 7.11 99.48 0.71 -12.59 16 21 H -0.24 -10.36 6.81 99.48 0.68 -9.68 16 22 C 0.14 3.69 6.65 22.50 0.15 3.84 16 23 O -0.49 -12.70 11.89 -92.59 -1.10 -13.80 16 24 H 0.09 1.06 8.14 -2.39 -0.02 1.04 16 25 H 0.07 1.25 7.53 -2.39 -0.02 1.23 16 26 H 0.08 1.08 8.09 -2.38 -0.02 1.06 16 27 H 0.15 2.41 8.06 -2.91 -0.02 2.39 16 28 H 0.13 3.26 8.00 -2.91 -0.02 3.23 16 29 H 0.09 2.77 5.64 -2.39 -0.01 2.76 16 30 H 0.04 1.12 7.86 -2.39 -0.02 1.10 16 31 H 0.06 2.31 6.84 -2.39 -0.02 2.30 16 32 H 0.05 2.24 7.03 -2.39 -0.02 2.22 16 33 H 0.01 0.45 8.14 -2.39 -0.02 0.43 16 34 H 0.06 1.83 6.44 -2.39 -0.02 1.81 16 35 H 0.04 1.60 7.78 -2.39 -0.02 1.58 16 36 H 0.05 2.20 8.14 -2.39 -0.02 2.18 16 37 H 0.26 15.57 8.31 -92.71 -0.77 14.80 16 38 H 0.40 6.34 9.06 -74.06 -0.67 5.67 16 Total: -1.00 -68.45 328.82 0.66 -67.79 By element: Atomic # 1 Polarization: 11.05 SS G_CDS: 0.37 Total: 11.43 kcal Atomic # 6 Polarization: -28.54 SS G_CDS: 4.09 Total: -24.46 kcal Atomic # 7 Polarization: -81.27 SS G_CDS: -3.84 Total: -85.11 kcal Atomic # 8 Polarization: -12.70 SS G_CDS: -1.10 Total: -13.80 kcal Atomic # 14 Polarization: 43.97 SS G_CDS: 1.83 Total: 45.80 kcal Atomic # 35 Polarization: -0.97 SS G_CDS: -0.69 Total: -1.66 kcal Total: -68.45 0.66 -67.79 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000180056660.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.123 kcal (2) G-P(sol) polarization free energy of solvation -68.452 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.328 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.658 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.794 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.671 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds