Wall clock time and date at job start Tue Mar 31 2020 15:52:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 C 1.38170 * 120.02314 * 2 1 4 4 C 1.38326 * 120.04591 * 179.97438 * 3 2 1 5 5 Br 1.89097 * 119.95129 * 180.02562 * 4 3 2 6 6 C 1.38360 * 120.09118 * 0.02562 * 4 3 2 7 7 C 1.38125 * 120.04957 * 0.02562 * 6 4 3 8 8 C 1.50692 * 120.02700 * 179.73009 * 7 6 4 9 9 N 1.46903 * 109.47229 * 260.00013 * 8 7 6 10 10 C 1.46895 * 111.00301 * 179.97438 * 9 8 7 11 11 C 1.53008 * 109.47154 * 180.02562 * 10 9 8 12 12 C 1.53000 * 109.47220 * 180.02562 * 11 10 9 13 13 C 1.50696 * 109.47105 * 179.97438 * 12 11 10 14 14 H 1.07996 * 119.99854 * 0.02562 * 13 12 11 15 15 C 1.37873 * 119.99680 * 179.97438 * 13 12 11 16 16 N 1.31514 * 120.00751 * 0.02562 * 15 13 12 17 17 Si 1.86804 * 119.99606 * 180.02562 * 15 13 12 18 18 H 1.48498 * 109.47288 * 90.00615 * 17 15 13 19 19 H 1.48506 * 109.47100 * 210.00201 * 17 15 13 20 20 H 1.48499 * 109.47226 * 330.00311 * 17 15 13 21 21 C 1.38705 * 120.02825 * 180.02562 * 2 1 3 22 22 O 1.35922 * 120.03848 * 359.97438 * 21 2 1 23 23 H 1.08998 * 109.47532 * 89.99234 * 1 2 3 24 24 H 1.08997 * 109.47334 * 209.99412 * 1 2 3 25 25 H 1.09002 * 109.47557 * 329.99428 * 1 2 3 26 26 H 1.07995 * 119.97499 * 359.97438 * 3 2 1 27 27 H 1.08002 * 119.97682 * 179.97438 * 6 4 3 28 28 H 1.09004 * 109.47314 * 19.99743 * 8 7 6 29 29 H 1.08998 * 109.47521 * 140.00017 * 8 7 6 30 30 H 1.00902 * 111.00153 * 303.95522 * 9 8 7 31 31 H 1.08997 * 109.47333 * 299.99629 * 10 9 8 32 32 H 1.09002 * 109.46931 * 60.00097 * 10 9 8 33 33 H 1.08997 * 109.46671 * 300.00002 * 11 10 9 34 34 H 1.09001 * 109.47052 * 59.99651 * 11 10 9 35 35 H 1.09006 * 109.46736 * 299.99904 * 12 11 10 36 36 H 1.08994 * 109.46880 * 59.99669 * 12 11 10 37 37 H 0.96997 * 120.00531 * 179.97438 * 16 15 13 38 38 H 0.96705 * 113.99572 * 270.06796 * 22 21 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1982 1.1963 0.0000 4 6 3.5815 1.1969 0.0005 5 35 4.5249 2.8357 0.0013 6 6 4.2757 0.0000 0.0005 7 6 3.5885 -1.1982 -0.0005 8 6 4.3450 -2.5014 -0.0067 9 7 4.3784 -3.0418 -1.3723 10 6 5.1101 -4.3148 -1.4170 11 6 5.1239 -4.8450 -2.8522 12 6 5.8855 -6.1711 -2.8987 13 6 5.8986 -6.6936 -4.3121 14 1 5.4127 -6.1354 -5.0987 15 6 6.5318 -7.8837 -4.6013 16 7 7.1239 -8.5633 -3.6436 17 14 6.5485 -8.5310 -6.3535 18 1 7.7445 -8.0093 -7.0625 19 1 6.5939 -10.0152 -6.3325 20 1 5.3206 -8.0832 -7.0584 21 6 2.2010 -1.2009 -0.0005 22 8 1.5228 -2.3788 -0.0005 23 1 -0.3634 0.0001 -1.0276 24 1 -0.3634 -0.8900 0.5137 25 1 -0.3634 0.8899 0.5139 26 1 1.6582 2.1316 -0.0004 27 1 5.3557 0.0026 0.0005 28 1 5.3638 -2.3318 0.3419 29 1 3.8489 -3.2127 0.6535 30 1 3.4456 -3.1474 -1.7423 31 1 6.1342 -4.1573 -1.0785 32 1 4.6196 -5.0389 -0.7665 33 1 4.1000 -5.0023 -3.1912 34 1 5.6147 -4.1207 -3.5024 35 1 6.9095 -6.0141 -2.5595 36 1 5.3944 -6.8951 -2.2486 37 1 7.5691 -9.4007 -3.8470 38 1 1.3260 -2.7193 0.8829 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000182194975.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:52:26 Heat of formation + Delta-G solvation = -39.674141 kcal Electronic energy + Delta-G solvation = -18953.792015 eV Core-core repulsion = 15841.543603 eV Total energy + Delta-G solvation = -3112.248412 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 327.058 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.47279 -37.05779 -36.48991 -33.98262 -33.00350 -32.21342 -30.77960 -29.17791 -27.20099 -26.78215 -24.71746 -22.30231 -21.76807 -21.23513 -20.00701 -18.63274 -16.74027 -16.29207 -16.18229 -15.49434 -15.16024 -14.58193 -14.32785 -14.13256 -13.78790 -13.64028 -13.33798 -12.75369 -12.74607 -12.62636 -12.37230 -12.01571 -11.84536 -11.50777 -11.35882 -10.83434 -10.77255 -10.71525 -10.55634 -10.54309 -10.45540 -9.66433 -9.36743 -9.09572 -8.98106 -8.71914 -8.31445 -8.15094 -5.96721 -3.98567 0.68748 0.91559 1.34770 3.10333 3.34762 3.40559 3.44612 3.84061 4.32763 4.37665 4.48722 4.68689 4.80158 4.96764 4.97803 5.22957 5.28218 5.37452 5.39146 5.40816 5.62413 5.73848 5.81578 5.87714 5.88994 5.96654 6.15270 6.34116 6.34698 6.74845 6.78180 7.17076 7.29216 7.35064 7.64376 7.72011 7.87062 8.03956 8.47586 9.08692 9.65319 11.14797 Molecular weight = 327.06amu Principal moments of inertia in cm(-1) A = 0.018347 B = 0.002298 C = 0.002143 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1525.801277 B =12181.210837 C =13059.745953 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.107 4.107 3 C -0.082 4.082 4 C -0.095 4.095 5 Br -0.052 7.052 6 C -0.064 4.064 7 C -0.090 4.090 8 C 0.103 3.897 9 N -0.684 5.684 10 C 0.060 3.940 11 C -0.107 4.107 12 C 0.023 3.977 13 C -0.518 4.518 14 H 0.055 0.945 15 C 0.055 3.945 16 N -0.897 5.897 17 Si 0.892 3.108 18 H -0.280 1.280 19 H -0.287 1.287 20 H -0.274 1.274 21 C 0.126 3.874 22 O -0.488 6.488 23 H 0.075 0.925 24 H 0.070 0.930 25 H 0.066 0.934 26 H 0.134 0.866 27 H 0.138 0.862 28 H 0.080 0.920 29 H 0.039 0.961 30 H 0.344 0.656 31 H 0.067 0.933 32 H 0.025 0.975 33 H 0.045 0.955 34 H 0.056 0.944 35 H 0.016 0.984 36 H 0.014 0.986 37 H 0.260 0.740 38 H 0.390 0.610 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.716 24.222 14.092 30.374 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.108 4.108 3 C -0.102 4.102 4 C -0.174 4.174 5 Br 0.034 6.966 6 C -0.084 4.084 7 C -0.092 4.092 8 C -0.026 4.026 9 N -0.315 5.315 10 C -0.069 4.069 11 C -0.145 4.145 12 C -0.015 4.015 13 C -0.556 4.556 14 H 0.073 0.927 15 C -0.145 4.145 16 N -0.537 5.537 17 Si 0.720 3.280 18 H -0.207 1.207 19 H -0.213 1.213 20 H -0.199 1.199 21 C 0.080 3.920 22 O -0.298 6.298 23 H 0.094 0.906 24 H 0.089 0.911 25 H 0.085 0.915 26 H 0.152 0.848 27 H 0.156 0.844 28 H 0.098 0.902 29 H 0.057 0.943 30 H 0.162 0.838 31 H 0.085 0.915 32 H 0.043 0.957 33 H 0.064 0.936 34 H 0.074 0.926 35 H 0.034 0.966 36 H 0.032 0.968 37 H 0.069 0.931 38 H 0.246 0.754 Dipole moment (debyes) X Y Z Total from point charges -10.678 25.087 13.333 30.351 hybrid contribution -0.748 -1.456 -0.040 1.637 sum -11.426 23.631 13.293 29.422 Atomic orbital electron populations 1.20652 0.89944 1.02765 1.02980 1.20163 0.96992 0.91931 1.01741 1.20841 0.91864 0.98101 0.99364 1.21731 0.94632 0.91862 1.09213 1.96721 1.75465 1.26687 1.97757 1.20916 1.00509 0.89640 0.97333 1.20215 0.92710 0.95810 1.00452 1.20721 0.99123 0.91123 0.91633 1.60630 1.22446 1.29763 1.18703 1.22144 0.97777 0.87578 0.99359 1.21622 1.00555 0.99344 0.92960 1.19062 0.95119 0.90371 0.96952 1.21267 1.34254 1.05819 0.94297 0.92660 1.25028 0.95500 0.96907 0.97103 1.69964 1.36280 1.15493 1.31964 0.86595 0.78448 0.77912 0.85060 1.20657 1.21269 1.19868 1.18251 0.89180 0.85160 0.99410 1.84871 1.76073 1.35572 1.33289 0.90642 0.91132 0.91472 0.84802 0.84417 0.90162 0.94321 0.83780 0.91466 0.95686 0.93622 0.92554 0.96587 0.96808 0.93059 0.75357 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.74 9.79 36.00 0.35 -0.38 16 2 C -0.11 -0.98 5.89 -104.48 -0.62 -1.60 16 3 C -0.08 -0.75 9.44 -39.57 -0.37 -1.12 16 4 C -0.09 -0.96 6.22 -39.50 -0.25 -1.21 16 5 Br -0.05 -0.48 33.70 -68.01 -2.29 -2.77 16 6 C -0.06 -0.69 9.40 -39.58 -0.37 -1.06 16 7 C -0.09 -1.01 5.41 -104.48 -0.56 -1.57 16 8 C 0.10 1.26 5.47 -4.98 -0.03 1.23 16 9 N -0.68 -10.43 6.49 -115.06 -0.75 -11.18 16 10 C 0.06 1.05 5.69 -3.82 -0.02 1.03 16 11 C -0.11 -2.28 5.41 -26.73 -0.14 -2.43 16 12 C 0.02 0.59 4.97 -27.88 -0.14 0.46 16 13 C -0.52 -15.05 9.11 -34.44 -0.31 -15.36 16 14 H 0.06 1.57 7.74 -52.49 -0.41 1.16 16 15 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 16 N -0.90 -27.40 13.29 55.43 0.74 -26.67 16 17 Si 0.89 22.06 29.54 -169.99 -5.02 17.03 16 18 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 19 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 20 H -0.27 -6.63 7.11 56.52 0.40 -6.23 16 21 C 0.13 1.30 6.64 -39.22 -0.26 1.04 16 22 O -0.49 -4.59 11.73 -19.49 -0.23 -4.81 16 23 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 24 H 0.07 0.43 7.53 -51.93 -0.39 0.04 16 25 H 0.07 0.36 8.09 -51.93 -0.42 -0.06 16 26 H 0.13 0.98 8.06 -52.49 -0.42 0.56 16 27 H 0.14 1.41 8.04 -52.49 -0.42 0.99 16 28 H 0.08 0.94 8.00 -51.93 -0.42 0.53 16 29 H 0.04 0.44 7.86 -51.93 -0.41 0.03 16 30 H 0.34 5.32 8.66 -39.29 -0.34 4.98 16 31 H 0.07 1.19 8.14 -51.93 -0.42 0.76 16 32 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16 33 H 0.04 0.96 8.14 -51.93 -0.42 0.54 16 34 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 35 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 36 H 0.01 0.38 8.14 -51.93 -0.42 -0.05 16 37 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 38 H 0.39 1.96 9.06 45.56 0.41 2.38 16 LS Contribution 343.30 15.07 5.17 5.17 Total: -1.00 -31.88 343.30 -10.11 -41.99 By element: Atomic # 1 Polarization: 5.60 SS G_CDS: -4.91 Total: 0.70 kcal Atomic # 6 Polarization: -16.64 SS G_CDS: -2.82 Total: -19.46 kcal Atomic # 7 Polarization: -37.84 SS G_CDS: -0.01 Total: -37.85 kcal Atomic # 8 Polarization: -4.59 SS G_CDS: -0.23 Total: -4.81 kcal Atomic # 14 Polarization: 22.06 SS G_CDS: -5.02 Total: 17.03 kcal Atomic # 35 Polarization: -0.48 SS G_CDS: -2.29 Total: -2.77 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -31.88 -10.11 -41.99 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000182194975.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.318 kcal (2) G-P(sol) polarization free energy of solvation -31.884 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.566 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.108 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.992 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.674 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds