Wall clock time and date at job start Tue Mar 31 2020 15:52:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 C 1.38170 * 120.02314 * 2 1 4 4 C 1.38326 * 120.04591 * 179.97438 * 3 2 1 5 5 Br 1.89097 * 119.95129 * 180.02562 * 4 3 2 6 6 C 1.38360 * 120.09118 * 0.02562 * 4 3 2 7 7 C 1.38125 * 120.04957 * 0.02562 * 6 4 3 8 8 C 1.50692 * 120.02700 * 179.73009 * 7 6 4 9 9 N 1.46903 * 109.47229 * 260.00013 * 8 7 6 10 10 C 1.46895 * 111.00301 * 179.97438 * 9 8 7 11 11 C 1.53008 * 109.47154 * 180.02562 * 10 9 8 12 12 C 1.53000 * 109.47220 * 180.02562 * 11 10 9 13 13 C 1.50696 * 109.47105 * 179.97438 * 12 11 10 14 14 H 1.07996 * 119.99854 * 0.02562 * 13 12 11 15 15 C 1.37873 * 119.99680 * 179.97438 * 13 12 11 16 16 N 1.31514 * 120.00751 * 0.02562 * 15 13 12 17 17 Si 1.86804 * 119.99606 * 180.02562 * 15 13 12 18 18 H 1.48498 * 109.47288 * 90.00615 * 17 15 13 19 19 H 1.48506 * 109.47100 * 210.00201 * 17 15 13 20 20 H 1.48499 * 109.47226 * 330.00311 * 17 15 13 21 21 C 1.38705 * 120.02825 * 180.02562 * 2 1 3 22 22 O 1.35922 * 120.03848 * 359.97438 * 21 2 1 23 23 H 1.08998 * 109.47532 * 89.99234 * 1 2 3 24 24 H 1.08997 * 109.47334 * 209.99412 * 1 2 3 25 25 H 1.09002 * 109.47557 * 329.99428 * 1 2 3 26 26 H 1.07995 * 119.97499 * 359.97438 * 3 2 1 27 27 H 1.08002 * 119.97682 * 179.97438 * 6 4 3 28 28 H 1.09004 * 109.47314 * 19.99743 * 8 7 6 29 29 H 1.08998 * 109.47521 * 140.00017 * 8 7 6 30 30 H 1.00902 * 111.00153 * 303.95522 * 9 8 7 31 31 H 1.08997 * 109.47333 * 299.99629 * 10 9 8 32 32 H 1.09002 * 109.46931 * 60.00097 * 10 9 8 33 33 H 1.08997 * 109.46671 * 300.00002 * 11 10 9 34 34 H 1.09001 * 109.47052 * 59.99651 * 11 10 9 35 35 H 1.09006 * 109.46736 * 299.99904 * 12 11 10 36 36 H 1.08994 * 109.46880 * 59.99669 * 12 11 10 37 37 H 0.96997 * 120.00531 * 179.97438 * 16 15 13 38 38 H 0.96705 * 113.99572 * 270.06796 * 22 21 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1982 1.1963 0.0000 4 6 3.5815 1.1969 0.0005 5 35 4.5249 2.8357 0.0013 6 6 4.2757 0.0000 0.0005 7 6 3.5885 -1.1982 -0.0005 8 6 4.3450 -2.5014 -0.0067 9 7 4.3784 -3.0418 -1.3723 10 6 5.1101 -4.3148 -1.4170 11 6 5.1239 -4.8450 -2.8522 12 6 5.8855 -6.1711 -2.8987 13 6 5.8986 -6.6936 -4.3121 14 1 5.4127 -6.1354 -5.0987 15 6 6.5318 -7.8837 -4.6013 16 7 7.1239 -8.5633 -3.6436 17 14 6.5485 -8.5310 -6.3535 18 1 7.7445 -8.0093 -7.0625 19 1 6.5939 -10.0152 -6.3325 20 1 5.3206 -8.0832 -7.0584 21 6 2.2010 -1.2009 -0.0005 22 8 1.5228 -2.3788 -0.0005 23 1 -0.3634 0.0001 -1.0276 24 1 -0.3634 -0.8900 0.5137 25 1 -0.3634 0.8899 0.5139 26 1 1.6582 2.1316 -0.0004 27 1 5.3557 0.0026 0.0005 28 1 5.3638 -2.3318 0.3419 29 1 3.8489 -3.2127 0.6535 30 1 3.4456 -3.1474 -1.7423 31 1 6.1342 -4.1573 -1.0785 32 1 4.6196 -5.0389 -0.7665 33 1 4.1000 -5.0023 -3.1912 34 1 5.6147 -4.1207 -3.5024 35 1 6.9095 -6.0141 -2.5595 36 1 5.3944 -6.8951 -2.2486 37 1 7.5691 -9.4007 -3.8470 38 1 1.3260 -2.7193 0.8829 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000182194975.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:52:26 Heat of formation + Delta-G solvation = -60.325231 kcal Electronic energy + Delta-G solvation = -18954.687513 eV Core-core repulsion = 15841.543603 eV Total energy + Delta-G solvation = -3113.143910 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 327.058 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.22210 -37.79808 -37.77133 -35.66685 -34.19978 -33.33631 -32.20376 -30.06715 -28.35620 -27.85084 -26.14459 -23.95651 -22.55176 -22.27410 -21.60082 -19.35087 -18.49120 -17.54404 -16.98677 -16.64903 -16.54569 -16.12425 -15.53099 -15.29014 -14.82688 -14.44606 -14.35871 -14.22114 -13.72058 -13.43891 -13.36880 -13.33654 -13.12830 -12.98345 -12.66798 -12.49028 -12.40960 -12.22028 -11.59027 -11.53098 -11.46206 -11.36670 -11.28038 -11.08895 -10.55490 -9.85994 -9.48327 -9.32772 -8.20455 -6.31433 -0.05759 0.15675 0.60335 1.39840 1.41420 1.52674 2.34517 2.41343 3.12543 3.15026 3.37314 3.64570 3.69461 4.08642 4.14309 4.23373 4.29205 4.37170 4.52536 4.57739 4.70008 4.72248 4.79129 4.85943 4.97599 5.08812 5.09746 5.15676 5.22919 5.26669 5.39050 5.51474 5.65144 5.74732 5.85524 6.01766 6.27073 6.41230 6.75243 6.85247 7.37747 8.91506 Molecular weight = 327.06amu Principal moments of inertia in cm(-1) A = 0.018347 B = 0.002298 C = 0.002143 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1525.801277 B =12181.210837 C =13059.745953 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C -0.110 4.110 3 C -0.079 4.079 4 C -0.105 4.105 5 Br -0.047 7.047 6 C -0.073 4.073 7 C -0.105 4.105 8 C 0.106 3.894 9 N -0.687 5.687 10 C 0.074 3.926 11 C -0.093 4.093 12 C 0.027 3.973 13 C -0.545 4.545 14 H 0.058 0.942 15 C -0.001 4.001 16 N -0.933 5.933 17 Si 0.965 3.035 18 H -0.272 1.272 19 H -0.280 1.280 20 H -0.264 1.264 21 C 0.124 3.876 22 O -0.498 6.498 23 H 0.073 0.927 24 H 0.077 0.923 25 H 0.084 0.916 26 H 0.153 0.847 27 H 0.137 0.863 28 H 0.082 0.918 29 H 0.049 0.951 30 H 0.344 0.656 31 H 0.065 0.935 32 H 0.027 0.973 33 H 0.047 0.953 34 H 0.050 0.950 35 H -0.007 1.007 36 H -0.008 1.008 37 H 0.264 0.736 38 H 0.408 0.592 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.990 25.130 13.754 31.455 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.112 4.112 3 C -0.099 4.099 4 C -0.185 4.185 5 Br 0.038 6.962 6 C -0.094 4.094 7 C -0.107 4.107 8 C -0.023 4.023 9 N -0.319 5.319 10 C -0.055 4.055 11 C -0.131 4.131 12 C -0.011 4.011 13 C -0.583 4.583 14 H 0.076 0.924 15 C -0.198 4.198 16 N -0.574 5.574 17 Si 0.790 3.210 18 H -0.197 1.197 19 H -0.205 1.205 20 H -0.188 1.188 21 C 0.078 3.922 22 O -0.311 6.311 23 H 0.092 0.908 24 H 0.096 0.904 25 H 0.103 0.897 26 H 0.171 0.829 27 H 0.155 0.845 28 H 0.100 0.900 29 H 0.067 0.933 30 H 0.162 0.838 31 H 0.083 0.917 32 H 0.045 0.955 33 H 0.066 0.934 34 H 0.069 0.931 35 H 0.011 0.989 36 H 0.011 0.989 37 H 0.073 0.927 38 H 0.268 0.732 Dipole moment (debyes) X Y Z Total from point charges -11.964 26.009 13.017 31.449 hybrid contribution -0.377 -1.709 0.122 1.754 sum -12.341 24.300 13.139 30.256 Atomic orbital electron populations 1.20707 0.88222 1.04080 1.03196 1.20429 0.98260 0.91456 1.01006 1.21115 0.91577 0.98988 0.98236 1.21841 0.95204 0.91851 1.09575 1.96718 1.75538 1.26162 1.97766 1.20979 1.00651 0.89994 0.97741 1.20133 0.93205 0.95222 1.02104 1.20719 0.99758 0.91874 0.89935 1.60546 1.22246 1.28031 1.21032 1.21838 0.98249 0.88807 0.96633 1.21373 0.99539 0.96625 0.95534 1.18956 0.94230 0.92426 0.95486 1.21703 1.34602 1.06462 0.95484 0.92415 1.25985 0.94843 0.97124 1.01896 1.70089 1.36895 1.15991 1.34406 0.85444 0.78955 0.77360 0.79277 1.19748 1.20539 1.18810 1.18350 0.88951 0.85861 0.99005 1.84821 1.75855 1.35373 1.35061 0.90831 0.90392 0.89691 0.82930 0.84503 0.89957 0.93267 0.83834 0.91651 0.95518 0.93441 0.93125 0.98899 0.98922 0.92717 0.73224 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.20 9.79 71.23 0.70 -0.50 16 2 C -0.11 -1.82 5.89 -19.77 -0.12 -1.93 16 3 C -0.08 -1.31 9.44 22.27 0.21 -1.10 16 4 C -0.11 -2.01 6.22 22.32 0.14 -1.87 16 5 Br -0.05 -0.83 33.70 -20.37 -0.69 -1.52 16 6 C -0.07 -1.54 9.40 22.27 0.21 -1.33 16 7 C -0.10 -2.25 5.41 -19.77 -0.11 -2.36 16 8 C 0.11 2.49 5.47 85.55 0.47 2.96 16 9 N -0.69 -20.49 6.49 -517.93 -3.36 -23.85 16 10 C 0.07 2.58 5.69 86.31 0.49 3.07 16 11 C -0.09 -3.99 5.41 30.60 0.17 -3.83 16 12 C 0.03 1.44 4.97 29.85 0.15 1.59 16 13 C -0.54 -31.96 9.11 25.60 0.23 -31.73 16 14 H 0.06 3.28 7.74 -2.91 -0.02 3.25 16 15 C 0.00 -0.05 5.46 84.65 0.46 0.41 16 16 N -0.93 -57.69 13.29 21.45 0.28 -57.40 16 17 Si 0.97 45.11 29.54 68.60 2.03 47.13 16 18 H -0.27 -12.29 7.11 99.48 0.71 -11.58 16 19 H -0.28 -12.69 7.11 99.48 0.71 -11.98 16 20 H -0.26 -11.81 7.11 99.48 0.71 -11.11 16 21 C 0.12 2.38 6.64 22.50 0.15 2.53 16 22 O -0.50 -8.55 11.73 -92.67 -1.09 -9.63 16 23 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 24 H 0.08 0.77 7.53 -2.39 -0.02 0.75 16 25 H 0.08 0.66 8.09 -2.39 -0.02 0.64 16 26 H 0.15 1.86 8.06 -2.91 -0.02 1.84 16 27 H 0.14 2.78 8.04 -2.91 -0.02 2.75 16 28 H 0.08 1.89 8.00 -2.38 -0.02 1.87 16 29 H 0.05 1.06 7.86 -2.39 -0.02 1.04 16 30 H 0.34 10.32 8.66 -89.69 -0.78 9.54 16 31 H 0.06 2.31 8.14 -2.39 -0.02 2.29 16 32 H 0.03 0.92 8.14 -2.39 -0.02 0.90 16 33 H 0.05 2.00 8.14 -2.39 -0.02 1.98 16 34 H 0.05 2.22 8.14 -2.39 -0.02 2.20 16 35 H -0.01 -0.43 8.14 -2.38 -0.02 -0.45 16 36 H -0.01 -0.44 8.14 -2.39 -0.02 -0.46 16 37 H 0.26 15.26 8.31 -92.71 -0.77 14.49 16 38 H 0.41 3.37 9.06 -74.05 -0.67 2.70 16 Total: -1.00 -67.75 343.30 -0.05 -67.80 By element: Atomic # 1 Polarization: 11.93 SS G_CDS: -0.38 Total: 11.56 kcal Atomic # 6 Polarization: -37.24 SS G_CDS: 3.15 Total: -34.09 kcal Atomic # 7 Polarization: -78.18 SS G_CDS: -3.08 Total: -81.25 kcal Atomic # 8 Polarization: -8.55 SS G_CDS: -1.09 Total: -9.63 kcal Atomic # 14 Polarization: 45.11 SS G_CDS: 2.03 Total: 47.13 kcal Atomic # 35 Polarization: -0.83 SS G_CDS: -0.69 Total: -1.52 kcal Total: -67.75 -0.05 -67.80 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000182194975.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.478 kcal (2) G-P(sol) polarization free energy of solvation -67.753 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.275 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.050 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.804 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.325 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds