Wall clock time and date at job start Tue Mar 31 2020 14:33:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31628 * 1 3 3 Si 1.86807 * 119.99815 * 2 1 4 4 H 1.48501 * 109.46840 * 180.02562 * 3 2 1 5 5 H 1.48499 * 109.47269 * 299.99979 * 3 2 1 6 6 H 1.48497 * 109.47235 * 60.00137 * 3 2 1 7 7 C 1.38794 * 120.00193 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00455 * 180.02562 * 7 2 1 9 9 S 1.76206 * 119.99924 * 359.97438 * 7 2 1 10 10 C 1.80989 * 100.00010 * 180.02562 * 9 7 2 11 11 C 1.50706 * 109.47203 * 180.02562 * 10 9 7 12 12 O 1.21281 * 119.99699 * 359.97438 * 11 10 9 13 13 N 1.34773 * 120.00080 * 180.02562 * 11 10 9 14 14 C 1.46506 * 119.99969 * 180.02562 * 13 11 10 15 15 C 1.50696 * 109.47148 * 179.72251 * 14 13 11 16 16 C 1.37975 * 119.87181 * 259.99741 * 15 14 13 17 17 C 1.38342 * 120.33789 * 180.02562 * 16 15 14 18 18 Cl 1.73596 * 120.13174 * 180.22818 * 17 16 15 19 19 C 1.38498 * 119.73883 * 0.20283 * 17 16 15 20 20 C 1.37698 * 119.96767 * 359.92965 * 19 17 16 21 21 C 1.38925 * 120.79493 * 359.43966 * 20 19 17 22 22 O 1.36153 * 111.21652 * 180.88052 * 21 20 19 23 23 C 1.43769 * 109.29426 * 341.20807 * 22 21 20 24 24 C 1.51649 * 132.16505 * 179.46004 * 20 19 17 25 25 H 0.97004 * 119.99966 * 359.97438 * 1 2 3 26 26 H 1.09004 * 109.47307 * 60.00332 * 10 9 7 27 27 H 1.08998 * 109.47675 * 300.00200 * 10 9 7 28 28 H 0.97005 * 120.00161 * 359.72088 * 13 11 10 29 29 H 1.09001 * 109.46512 * 299.72412 * 14 13 11 30 30 H 1.08998 * 109.47174 * 59.71534 * 14 13 11 31 31 H 1.08000 * 119.82946 * 359.97438 * 16 15 14 32 32 H 1.08001 * 120.01182 * 179.90981 * 19 17 16 33 33 H 1.09000 * 110.74673 * 269.26694 * 23 22 21 34 34 H 1.09003 * 110.90610 * 145.99845 * 23 22 21 35 35 H 1.09004 * 110.93211 * 313.63105 * 24 20 19 36 36 H 1.08993 * 110.93411 * 77.27005 * 24 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 3.7103 1.3465 -0.0006 5 1 1.8915 2.3965 -1.2125 6 1 1.8915 2.3965 1.2125 7 6 2.0103 -1.2020 -0.0005 8 1 3.0903 -1.2020 -0.0001 9 16 1.1293 -2.7280 -0.0005 10 6 2.5158 -3.8913 -0.0005 11 6 1.9873 -5.3027 -0.0012 12 8 0.7910 -5.5022 -0.0011 13 7 2.8441 -6.3430 -0.0008 14 6 2.3303 -7.7151 -0.0019 15 6 3.4847 -8.6837 -0.0081 16 6 3.8735 -9.2821 -1.1890 17 6 4.9316 -10.1731 -1.2056 18 17 5.4199 -10.9184 -2.6954 19 6 5.6000 -10.4679 -0.0290 20 6 5.2111 -9.8734 1.1506 21 6 4.1584 -8.9672 1.1770 22 8 3.9534 -8.4866 2.4343 23 6 4.5717 -9.3685 3.3866 24 6 5.7261 -9.9978 2.5715 25 1 -0.4850 0.8401 0.0004 26 1 3.1244 -3.7313 0.8895 27 1 3.1245 -3.7313 -0.8905 28 1 3.8009 -6.1834 -0.0041 29 1 1.7248 -7.8770 0.8898 30 1 1.7185 -7.8732 -0.8901 31 1 3.3485 -9.0542 -2.1049 32 1 6.4257 -11.1640 -0.0366 33 1 3.8695 -10.1343 3.7163 34 1 4.9600 -8.8104 4.2386 35 1 5.8701 -11.0435 2.8434 36 1 6.6490 -9.4328 2.7021 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000182416784.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:33:26 Heat of formation + Delta-G solvation = -52.755043 kcal Electronic energy + Delta-G solvation = -21814.074746 eV Core-core repulsion = 18222.606566 eV Total energy + Delta-G solvation = -3591.468180 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 327.048 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.64209 -39.13389 -38.21337 -36.63912 -34.95687 -32.89527 -32.40302 -30.90537 -29.75659 -29.14441 -26.01822 -25.36942 -23.78208 -22.57839 -21.38170 -20.34440 -17.94732 -17.81797 -17.29227 -16.81501 -16.44977 -16.09291 -15.67486 -15.15821 -14.78193 -14.48488 -14.10736 -13.93487 -13.72533 -13.47101 -13.33221 -13.13681 -12.95377 -12.60759 -12.48862 -12.25085 -12.15703 -11.74243 -11.59344 -11.12063 -11.05127 -10.99198 -10.89783 -10.73341 -9.78771 -9.62736 -9.19351 -9.05398 -8.85589 -8.46971 -8.19706 -6.46675 -6.19296 -3.89332 0.65326 0.68902 1.73715 2.77192 2.95295 3.14815 3.18655 3.23371 3.31236 3.39481 3.85086 3.87635 4.04225 4.22777 4.25662 4.51801 4.56226 4.65985 4.88915 4.99483 5.11364 5.15935 5.17272 5.22340 5.25665 5.41137 5.61236 5.65130 5.70621 5.82287 5.87022 5.94205 6.04508 6.18766 6.59952 6.65159 7.62493 7.74845 8.38113 8.65223 9.26184 10.88203 Molecular weight = 327.05amu Principal moments of inertia in cm(-1) A = 0.017070 B = 0.002449 C = 0.002318 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1639.910512 B =11430.253695 C =12076.300138 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.868 5.868 2 C 0.073 3.927 3 Si 0.919 3.081 4 H -0.272 1.272 5 H -0.280 1.280 6 H -0.280 1.280 7 C -0.534 4.534 8 H 0.073 0.927 9 S -0.060 6.060 10 C -0.152 4.152 11 C 0.533 3.467 12 O -0.518 6.518 13 N -0.733 5.733 14 C 0.169 3.831 15 C -0.111 4.111 16 C -0.055 4.055 17 C -0.067 4.067 18 Cl -0.064 7.064 19 C -0.055 4.055 20 C -0.169 4.169 21 C 0.133 3.867 22 O -0.290 6.290 23 C 0.049 3.951 24 C -0.108 4.108 25 H 0.268 0.732 26 H 0.090 0.910 27 H 0.089 0.911 28 H 0.398 0.602 29 H 0.079 0.921 30 H 0.078 0.922 31 H 0.146 0.854 32 H 0.136 0.864 33 H 0.080 0.920 34 H 0.111 0.889 35 H 0.095 0.905 36 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.849 -25.369 2.537 29.504 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.503 5.503 2 C -0.136 4.136 3 Si 0.745 3.255 4 H -0.196 1.196 5 H -0.206 1.206 6 H -0.206 1.206 7 C -0.682 4.682 8 H 0.091 0.909 9 S 0.166 5.834 10 C -0.303 4.303 11 C 0.320 3.680 12 O -0.392 6.392 13 N -0.387 5.387 14 C 0.046 3.954 15 C -0.112 4.112 16 C -0.074 4.074 17 C -0.093 4.093 18 Cl -0.035 7.035 19 C -0.074 4.074 20 C -0.170 4.170 21 C 0.086 3.914 22 O -0.203 6.203 23 C -0.026 4.026 24 C -0.145 4.145 25 H 0.077 0.923 26 H 0.108 0.892 27 H 0.108 0.892 28 H 0.232 0.768 29 H 0.097 0.903 30 H 0.096 0.904 31 H 0.164 0.836 32 H 0.154 0.846 33 H 0.099 0.901 34 H 0.129 0.871 35 H 0.113 0.887 36 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 12.582 -25.462 2.506 28.512 hybrid contribution 2.686 1.065 -0.075 2.890 sum 15.268 -24.398 2.431 28.884 Atomic orbital electron populations 1.70031 1.05942 1.27303 1.47042 1.24993 0.95027 0.99024 0.94591 0.86117 0.79595 0.81905 0.77873 1.19623 1.20582 1.20587 1.22913 0.94948 0.91660 1.58700 0.90892 1.85387 1.04971 0.96300 1.96703 1.23526 1.06536 0.95285 1.04950 1.20302 0.86471 0.86185 0.75078 1.90702 1.15313 1.85551 1.47639 1.46027 1.10021 1.04793 1.77901 1.19994 0.92388 0.79580 1.03485 1.19100 0.99404 1.02606 0.90088 1.20776 0.94903 0.94063 0.97706 1.20582 0.99823 1.01122 0.87807 1.98378 1.91090 1.81389 1.32658 1.20122 0.99152 0.98872 0.89221 1.20673 0.98525 1.01859 0.95911 1.19472 0.92840 0.92626 0.86442 1.86964 1.74238 1.46414 1.12674 1.23919 0.93530 0.93102 0.92020 1.21819 0.99530 1.03281 0.89873 0.92263 0.89211 0.89225 0.76806 0.90302 0.90358 0.83601 0.84612 0.90136 0.87101 0.88691 0.88683 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -26.39 13.22 55.49 0.73 -25.65 16 2 C 0.07 2.10 5.49 -17.43 -0.10 2.00 16 3 Si 0.92 21.59 29.55 -169.99 -5.02 16.57 16 4 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 5 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 6 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 7 C -0.53 -15.38 9.50 30.94 0.29 -15.09 16 8 H 0.07 2.00 7.80 -52.49 -0.41 1.59 16 9 S -0.06 -1.66 20.57 -107.50 -2.21 -3.87 16 10 C -0.15 -3.16 6.16 36.01 0.22 -2.94 16 11 C 0.53 10.28 7.85 -10.98 -0.09 10.19 16 12 O -0.52 -11.99 15.86 5.56 0.09 -11.91 16 13 N -0.73 -10.52 5.55 -61.47 -0.34 -10.86 16 14 C 0.17 2.14 5.76 -5.19 -0.03 2.11 16 15 C -0.11 -1.15 5.27 -104.35 -0.55 -1.70 16 16 C -0.06 -0.51 9.42 -39.64 -0.37 -0.88 16 17 C -0.07 -0.57 6.33 -39.45 -0.25 -0.82 16 18 Cl -0.06 -0.53 28.97 -51.86 -1.50 -2.03 16 19 C -0.05 -0.42 9.82 -39.68 -0.39 -0.81 16 20 C -0.17 -1.37 6.27 -104.10 -0.65 -2.03 16 21 C 0.13 1.35 6.76 -38.96 -0.26 1.09 16 22 O -0.29 -3.09 11.05 -20.23 -0.22 -3.31 16 23 C 0.05 0.31 8.01 38.05 0.30 0.62 16 24 C -0.11 -0.58 7.12 -26.52 -0.19 -0.77 16 25 H 0.27 7.53 8.31 -40.82 -0.34 7.19 16 26 H 0.09 1.73 8.14 -51.91 -0.42 1.31 16 27 H 0.09 1.71 8.14 -51.92 -0.42 1.29 16 28 H 0.40 4.84 8.46 -40.82 -0.35 4.49 16 29 H 0.08 1.09 8.14 -51.93 -0.42 0.67 16 30 H 0.08 0.97 7.99 -51.93 -0.41 0.56 16 31 H 0.15 1.19 8.02 -52.49 -0.42 0.77 16 32 H 0.14 0.78 8.06 -52.49 -0.42 0.36 16 33 H 0.08 0.42 8.14 -51.93 -0.42 -0.01 16 34 H 0.11 0.50 8.14 -51.93 -0.42 0.08 16 35 H 0.09 0.33 8.14 -51.93 -0.42 -0.09 16 36 H 0.09 0.44 8.14 -51.93 -0.42 0.02 16 LS Contribution 345.49 15.07 5.21 5.21 Total: -1.00 -35.15 345.49 -9.44 -44.59 By element: Atomic # 1 Polarization: 4.42 SS G_CDS: -4.11 Total: 0.31 kcal Atomic # 6 Polarization: -6.98 SS G_CDS: -2.06 Total: -9.04 kcal Atomic # 7 Polarization: -36.91 SS G_CDS: 0.39 Total: -36.52 kcal Atomic # 8 Polarization: -15.08 SS G_CDS: -0.14 Total: -15.22 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -5.02 Total: 16.57 kcal Atomic # 16 Polarization: -1.66 SS G_CDS: -2.21 Total: -3.87 kcal Atomic # 17 Polarization: -0.53 SS G_CDS: -1.50 Total: -2.03 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -35.15 -9.44 -44.59 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000182416784.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.168 kcal (2) G-P(sol) polarization free energy of solvation -35.147 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.315 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.440 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.587 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.755 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds