Wall clock time and date at job start Tue Mar 31 2020 14:33:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31628 * 1 3 3 Si 1.86807 * 119.99815 * 2 1 4 4 H 1.48501 * 109.46840 * 180.02562 * 3 2 1 5 5 H 1.48499 * 109.47269 * 299.99979 * 3 2 1 6 6 H 1.48497 * 109.47235 * 60.00137 * 3 2 1 7 7 C 1.38794 * 120.00193 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00455 * 180.02562 * 7 2 1 9 9 S 1.76206 * 119.99924 * 359.97438 * 7 2 1 10 10 C 1.80989 * 100.00010 * 180.02562 * 9 7 2 11 11 C 1.50706 * 109.47203 * 180.02562 * 10 9 7 12 12 O 1.21281 * 119.99699 * 359.97438 * 11 10 9 13 13 N 1.34773 * 120.00080 * 180.02562 * 11 10 9 14 14 C 1.46506 * 119.99969 * 180.02562 * 13 11 10 15 15 C 1.50696 * 109.47148 * 179.72251 * 14 13 11 16 16 C 1.37975 * 119.87181 * 259.99741 * 15 14 13 17 17 C 1.38342 * 120.33789 * 180.02562 * 16 15 14 18 18 Cl 1.73596 * 120.13174 * 180.22818 * 17 16 15 19 19 C 1.38498 * 119.73883 * 0.20283 * 17 16 15 20 20 C 1.37698 * 119.96767 * 359.92965 * 19 17 16 21 21 C 1.38925 * 120.79493 * 359.43966 * 20 19 17 22 22 O 1.36153 * 111.21652 * 180.88052 * 21 20 19 23 23 C 1.43769 * 109.29426 * 341.20807 * 22 21 20 24 24 C 1.51649 * 132.16505 * 179.46004 * 20 19 17 25 25 H 0.97004 * 119.99966 * 359.97438 * 1 2 3 26 26 H 1.09004 * 109.47307 * 60.00332 * 10 9 7 27 27 H 1.08998 * 109.47675 * 300.00200 * 10 9 7 28 28 H 0.97005 * 120.00161 * 359.72088 * 13 11 10 29 29 H 1.09001 * 109.46512 * 299.72412 * 14 13 11 30 30 H 1.08998 * 109.47174 * 59.71534 * 14 13 11 31 31 H 1.08000 * 119.82946 * 359.97438 * 16 15 14 32 32 H 1.08001 * 120.01182 * 179.90981 * 19 17 16 33 33 H 1.09000 * 110.74673 * 269.26694 * 23 22 21 34 34 H 1.09003 * 110.90610 * 145.99845 * 23 22 21 35 35 H 1.09004 * 110.93211 * 313.63105 * 24 20 19 36 36 H 1.08993 * 110.93411 * 77.27005 * 24 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 3.7103 1.3465 -0.0006 5 1 1.8915 2.3965 -1.2125 6 1 1.8915 2.3965 1.2125 7 6 2.0103 -1.2020 -0.0005 8 1 3.0903 -1.2020 -0.0001 9 16 1.1293 -2.7280 -0.0005 10 6 2.5158 -3.8913 -0.0005 11 6 1.9873 -5.3027 -0.0012 12 8 0.7910 -5.5022 -0.0011 13 7 2.8441 -6.3430 -0.0008 14 6 2.3303 -7.7151 -0.0019 15 6 3.4847 -8.6837 -0.0081 16 6 3.8735 -9.2821 -1.1890 17 6 4.9316 -10.1731 -1.2056 18 17 5.4199 -10.9184 -2.6954 19 6 5.6000 -10.4679 -0.0290 20 6 5.2111 -9.8734 1.1506 21 6 4.1584 -8.9672 1.1770 22 8 3.9534 -8.4866 2.4343 23 6 4.5717 -9.3685 3.3866 24 6 5.7261 -9.9978 2.5715 25 1 -0.4850 0.8401 0.0004 26 1 3.1244 -3.7313 0.8895 27 1 3.1245 -3.7313 -0.8905 28 1 3.8009 -6.1834 -0.0041 29 1 1.7248 -7.8770 0.8898 30 1 1.7185 -7.8732 -0.8901 31 1 3.3485 -9.0542 -2.1049 32 1 6.4257 -11.1640 -0.0366 33 1 3.8695 -10.1343 3.7163 34 1 4.9600 -8.8104 4.2386 35 1 5.8701 -11.0435 2.8434 36 1 6.6490 -9.4328 2.7021 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000182416784.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:33:26 Heat of formation + Delta-G solvation = -76.143630 kcal Electronic energy + Delta-G solvation = -21815.088952 eV Core-core repulsion = 18222.606566 eV Total energy + Delta-G solvation = -3592.482385 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 327.048 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -42.29709 -40.58611 -38.94534 -37.35327 -36.06826 -34.58450 -33.76232 -31.87441 -30.53266 -30.30174 -27.73853 -26.88450 -24.33745 -23.25873 -22.10130 -21.83004 -19.87264 -18.51233 -18.11894 -17.80892 -17.59105 -16.98029 -16.88191 -16.73960 -16.54536 -15.80252 -15.29309 -14.93622 -14.64621 -14.48267 -14.30920 -14.22896 -13.99213 -13.87133 -13.44653 -13.16083 -13.13988 -12.90681 -12.80338 -12.63372 -12.59665 -12.31262 -11.80467 -11.70082 -11.50628 -11.15649 -11.06104 -10.28104 -10.19495 -10.01823 -9.15197 -8.66670 -8.34565 -6.12693 -0.04907 0.02001 1.07959 1.27402 1.41839 1.47277 1.58654 1.59332 2.11058 2.26362 2.28303 2.57515 2.99567 3.31714 3.32506 3.38687 3.70560 3.85126 3.96175 4.03848 4.14452 4.22855 4.26871 4.31740 4.49683 4.51810 4.62917 4.79363 4.82553 4.90428 4.95885 5.07231 5.17577 5.33093 5.35294 5.42357 5.99429 6.20372 6.44157 7.06725 7.19094 8.74997 Molecular weight = 327.05amu Principal moments of inertia in cm(-1) A = 0.017070 B = 0.002449 C = 0.002318 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1639.910512 B =11430.253695 C =12076.300138 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.911 5.911 2 C 0.013 3.987 3 Si 1.000 3.000 4 H -0.257 1.257 5 H -0.273 1.273 6 H -0.273 1.273 7 C -0.546 4.546 8 H 0.082 0.918 9 S -0.149 6.149 10 C -0.129 4.129 11 C 0.536 3.464 12 O -0.564 6.564 13 N -0.708 5.708 14 C 0.172 3.828 15 C -0.122 4.122 16 C -0.058 4.058 17 C -0.071 4.071 18 Cl -0.061 7.061 19 C -0.049 4.049 20 C -0.166 4.166 21 C 0.118 3.882 22 O -0.320 6.320 23 C 0.040 3.960 24 C -0.101 4.101 25 H 0.271 0.729 26 H 0.107 0.893 27 H 0.110 0.890 28 H 0.412 0.588 29 H 0.063 0.937 30 H 0.079 0.921 31 H 0.151 0.849 32 H 0.160 0.840 33 H 0.089 0.911 34 H 0.127 0.873 35 H 0.120 0.880 36 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.997 -26.268 2.897 31.973 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.192 4.192 3 Si 0.822 3.178 4 H -0.181 1.181 5 H -0.199 1.199 6 H -0.199 1.199 7 C -0.693 4.693 8 H 0.100 0.900 9 S 0.079 5.921 10 C -0.280 4.280 11 C 0.322 3.678 12 O -0.442 6.442 13 N -0.362 5.362 14 C 0.049 3.951 15 C -0.124 4.124 16 C -0.077 4.077 17 C -0.098 4.098 18 Cl -0.032 7.032 19 C -0.067 4.067 20 C -0.168 4.168 21 C 0.071 3.929 22 O -0.234 6.234 23 C -0.034 4.034 24 C -0.137 4.137 25 H 0.080 0.920 26 H 0.126 0.874 27 H 0.128 0.872 28 H 0.248 0.752 29 H 0.082 0.918 30 H 0.097 0.903 31 H 0.169 0.831 32 H 0.177 0.823 33 H 0.107 0.893 34 H 0.145 0.855 35 H 0.138 0.862 36 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 15.782 -26.405 2.868 30.896 hybrid contribution 1.773 1.169 -0.162 2.129 sum 17.555 -25.237 2.706 30.861 Atomic orbital electron populations 1.70191 1.07973 1.28566 1.48059 1.26142 0.95991 1.03344 0.93732 0.84887 0.78576 0.76251 0.78101 1.18058 1.19883 1.19881 1.23234 0.95335 0.91976 1.58796 0.89969 1.85560 1.10393 0.99159 1.97037 1.23363 1.03641 0.94258 1.06732 1.20059 0.86161 0.86547 0.75031 1.90689 1.17227 1.86048 1.50219 1.45808 1.10159 1.04651 1.75546 1.19987 0.93480 0.78840 1.02758 1.18866 0.99344 1.03083 0.91058 1.20815 0.95231 0.94171 0.97480 1.20667 0.99756 1.01033 0.88368 1.98382 1.90989 1.81255 1.32561 1.20401 0.99227 0.98545 0.88573 1.20991 0.97713 1.00708 0.97350 1.19664 0.93619 0.93306 0.86289 1.86924 1.75068 1.47965 1.13405 1.24229 0.94083 0.93237 0.91887 1.21902 0.99295 1.04915 0.87626 0.91969 0.87435 0.87164 0.75180 0.91821 0.90310 0.83116 0.82252 0.89271 0.85486 0.86216 0.87504 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -56.52 13.22 21.65 0.29 -56.23 16 2 C 0.01 0.72 5.49 84.86 0.47 1.19 16 3 Si 1.00 44.02 29.55 68.60 2.03 46.05 16 4 H -0.26 -10.57 7.11 99.48 0.71 -9.86 16 5 H -0.27 -11.66 7.11 99.48 0.71 -10.95 16 6 H -0.27 -11.65 7.11 99.48 0.71 -10.95 16 7 C -0.55 -31.59 9.50 67.95 0.65 -30.95 16 8 H 0.08 4.43 7.80 -2.91 -0.02 4.41 16 9 S -0.15 -8.42 20.57 -56.49 -1.16 -9.58 16 10 C -0.13 -5.30 6.16 71.24 0.44 -4.86 16 11 C 0.54 20.80 7.85 87.66 0.69 21.49 16 12 O -0.56 -26.98 15.86 -3.03 -0.05 -27.03 16 13 N -0.71 -20.01 5.55 -466.78 -2.59 -22.60 16 14 C 0.17 4.40 5.76 85.63 0.49 4.89 16 15 C -0.12 -2.46 5.27 -19.69 -0.10 -2.56 16 16 C -0.06 -1.00 9.42 22.23 0.21 -0.79 16 17 C -0.07 -1.10 6.33 22.36 0.14 -0.96 16 18 Cl -0.06 -0.90 28.97 -2.72 -0.08 -0.98 16 19 C -0.05 -0.62 9.82 22.20 0.22 -0.40 16 20 C -0.17 -2.31 6.27 -19.52 -0.12 -2.43 16 21 C 0.12 2.26 6.76 22.67 0.15 2.41 16 22 O -0.32 -6.51 11.05 -95.29 -1.05 -7.56 16 23 C 0.04 0.42 8.01 72.56 0.58 1.00 16 24 C -0.10 -0.78 7.12 30.73 0.22 -0.56 16 25 H 0.27 15.54 8.31 -92.71 -0.77 14.77 16 26 H 0.11 4.04 8.14 -2.39 -0.02 4.02 16 27 H 0.11 4.08 8.14 -2.40 -0.02 4.06 16 28 H 0.41 9.46 8.46 -92.70 -0.78 8.67 16 29 H 0.06 1.83 8.14 -2.39 -0.02 1.81 16 30 H 0.08 2.00 7.99 -2.39 -0.02 1.98 16 31 H 0.15 2.36 8.02 -2.91 -0.02 2.33 16 32 H 0.16 1.25 8.06 -2.91 -0.02 1.23 16 33 H 0.09 0.76 8.14 -2.39 -0.02 0.74 16 34 H 0.13 0.87 8.14 -2.39 -0.02 0.85 16 35 H 0.12 0.36 8.14 -2.39 -0.02 0.34 16 36 H 0.11 0.62 8.14 -2.39 -0.02 0.60 16 Total: -1.00 -78.17 345.49 1.75 -76.42 By element: Atomic # 1 Polarization: 13.71 SS G_CDS: 0.34 Total: 14.05 kcal Atomic # 6 Polarization: -16.57 SS G_CDS: 4.03 Total: -12.54 kcal Atomic # 7 Polarization: -76.53 SS G_CDS: -2.30 Total: -78.83 kcal Atomic # 8 Polarization: -33.49 SS G_CDS: -1.10 Total: -34.59 kcal Atomic # 14 Polarization: 44.02 SS G_CDS: 2.03 Total: 46.05 kcal Atomic # 16 Polarization: -8.42 SS G_CDS: -1.16 Total: -9.58 kcal Atomic # 17 Polarization: -0.90 SS G_CDS: -0.08 Total: -0.98 kcal Total: -78.17 1.75 -76.42 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000182416784.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.273 kcal (2) G-P(sol) polarization free energy of solvation -78.167 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.894 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.750 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.416 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.144 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds