Wall clock time and date at job start Tue Mar 31 2020 14:48:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.33443 * 125.97198 * 2 1 4 4 N 1.31985 * 114.57002 * 180.02562 * 3 2 1 5 5 C 1.29624 * 116.91910 * 359.97438 * 4 3 2 6 6 N 1.39002 * 124.94557 * 180.26550 * 5 4 3 7 7 C 1.34778 * 120.00122 * 359.69134 * 6 5 4 8 8 O 1.21290 * 119.99631 * 0.02562 * 7 6 5 9 9 C 1.50693 * 120.00334 * 179.97438 * 7 6 5 10 10 H 1.08997 * 108.70525 * 300.70615 * 9 7 6 11 11 C 1.54561 * 108.75446 * 58.95969 * 9 7 6 12 12 S 1.84205 * 101.32782 * 144.06338 * 11 9 7 13 13 C 1.84070 * 93.91553 * 327.74657 * 12 11 9 14 14 N 1.45506 * 108.75668 * 182.45086 * 9 7 6 15 15 C 1.34773 * 122.43176 * 60.10810 * 14 9 7 16 16 O 1.21686 * 119.99631 * 0.02562 * 15 14 9 17 17 C 1.46371 * 120.00212 * 180.02562 * 15 14 9 18 18 H 1.08005 * 119.99704 * 0.02562 * 17 15 14 19 19 C 1.40047 * 120.00266 * 179.97438 * 17 15 14 20 20 N 1.30676 * 119.99737 * 0.02562 * 19 17 15 21 21 Si 1.86800 * 120.00251 * 180.02562 * 19 17 15 22 22 H 1.48502 * 109.46744 * 0.02562 * 21 19 17 23 23 H 1.48497 * 109.46934 * 120.00230 * 21 19 17 24 24 H 1.48499 * 109.47035 * 240.00486 * 21 19 17 25 25 S 1.70968 * 110.10954 * 359.97438 * 5 4 3 26 26 H 1.08993 * 109.47249 * 180.02562 * 1 2 3 27 27 H 1.09005 * 109.47230 * 300.00252 * 1 2 3 28 28 H 1.09002 * 109.47133 * 60.00046 * 1 2 3 29 29 H 1.07998 * 122.71334 * 0.02562 * 3 2 1 30 30 H 0.96995 * 119.99848 * 179.69527 * 6 5 4 31 31 H 1.08995 * 111.05736 * 262.07862 * 11 9 7 32 32 H 1.09004 * 111.04966 * 26.05298 * 11 9 7 33 33 H 1.08993 * 110.78313 * 151.71908 * 13 12 11 34 34 H 1.09006 * 110.77607 * 274.96455 * 13 12 11 35 35 H 0.96998 * 119.99958 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2908 1.0800 0.0000 4 7 3.5846 0.8190 -0.0005 5 6 3.9313 -0.4300 -0.0005 6 7 5.2422 -0.8923 0.0043 7 6 6.2660 -0.0158 0.0031 8 8 6.0434 1.1765 -0.0018 9 6 7.6871 -0.5170 0.0088 10 1 7.8392 -1.1265 0.8995 11 6 7.9079 -1.3994 -1.2408 12 16 9.6486 -0.9820 -1.6755 13 6 9.5173 0.7512 -1.0697 14 7 8.5861 0.6258 0.0650 15 6 8.5704 1.5083 1.0835 16 8 7.7845 1.3643 2.0013 17 6 9.4987 2.6400 1.0857 18 1 10.1959 2.7681 0.2708 19 6 9.4821 3.5574 2.1437 20 7 8.6381 3.4027 3.1293 21 14 10.6663 5.0020 2.1461 22 1 11.5113 4.9513 0.9260 23 1 9.8973 6.2723 2.1628 24 1 11.5312 4.9311 3.3512 25 16 2.5417 -1.4258 0.0010 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3634 0.5139 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 1.8982 2.0861 0.0004 30 1 5.4201 -1.8458 0.0085 31 1 7.8083 -2.4568 -0.9960 32 1 7.2259 -1.1191 -2.0435 33 1 10.4877 1.1189 -0.7365 34 1 9.1037 1.4003 -1.8415 35 1 8.6268 4.0378 3.8624 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000184946445.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:48:02 Heat of formation + Delta-G solvation = 7.118538 kcal Electronic energy + Delta-G solvation = -23252.287615 eV Core-core repulsion = 19697.752206 eV Total energy + Delta-G solvation = -3554.535409 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 327.050 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.40408 -39.10070 -37.35090 -34.76791 -34.72950 -32.51144 -32.17233 -30.82843 -26.88351 -26.39888 -26.24177 -24.64337 -23.24287 -21.60139 -19.85704 -19.24255 -18.21089 -16.98977 -16.68753 -16.58366 -16.23484 -15.60878 -15.23329 -14.75586 -14.52771 -14.28751 -13.98257 -13.89452 -13.50567 -13.14015 -12.97289 -12.78085 -12.74194 -12.54460 -12.05671 -11.85184 -11.44509 -11.26369 -11.19104 -11.00060 -10.59485 -10.41406 -10.40275 -10.21642 -9.77953 -9.19783 -9.00070 -8.89075 -8.04483 -7.86232 -7.59782 -7.55187 -6.25361 -4.71727 0.81564 1.00686 1.64146 1.89300 2.30651 2.82906 2.96720 3.12252 3.19707 3.23908 3.30817 3.87987 4.20578 4.42386 4.53706 4.61210 4.86412 4.94899 5.05830 5.21843 5.31379 5.37075 5.59079 5.65709 5.68276 5.78315 5.91111 6.01800 6.04952 6.42378 6.90145 7.19487 7.37341 7.84610 8.02702 8.16867 8.52689 8.95104 9.17572 10.47013 10.67173 Molecular weight = 327.05amu Principal moments of inertia in cm(-1) A = 0.013110 B = 0.004195 C = 0.003328 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2135.326799 B = 6673.612871 C = 8410.195717 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 C -0.253 4.253 3 C 0.071 3.929 4 N -0.473 5.473 5 C 0.289 3.711 6 N -0.642 5.642 7 C 0.492 3.508 8 O -0.417 6.417 9 C 0.138 3.862 10 H 0.101 0.899 11 C -0.067 4.067 12 S -0.303 6.303 13 C 0.192 3.808 14 N -0.622 5.622 15 C 0.573 3.427 16 O -0.553 6.553 17 C -0.535 4.535 18 H 0.071 0.929 19 C 0.088 3.912 20 N -0.761 5.761 21 Si 0.910 3.090 22 H -0.262 1.262 23 H -0.275 1.275 24 H -0.275 1.275 25 S 0.093 5.907 26 H 0.065 0.935 27 H 0.075 0.925 28 H 0.074 0.926 29 H 0.175 0.825 30 H 0.415 0.585 31 H 0.120 0.880 32 H 0.097 0.903 33 H 0.117 0.883 34 H 0.079 0.921 35 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.113 -11.496 -8.492 17.509 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.375 4.375 3 C -0.080 4.080 4 N -0.194 5.194 5 C -0.081 4.081 6 N -0.295 5.295 7 C 0.272 3.728 8 O -0.279 6.279 9 C 0.026 3.974 10 H 0.118 0.882 11 C -0.217 4.217 12 S -0.077 6.077 13 C -0.043 4.043 14 N -0.364 5.364 15 C 0.379 3.621 16 O -0.432 6.432 17 C -0.572 4.572 18 H 0.090 0.910 19 C -0.133 4.133 20 N -0.389 5.389 21 Si 0.734 3.266 22 H -0.186 1.186 23 H -0.201 1.201 24 H -0.201 1.201 25 S 0.342 5.658 26 H 0.084 0.916 27 H 0.094 0.906 28 H 0.093 0.907 29 H 0.192 0.808 30 H 0.252 0.748 31 H 0.138 0.862 32 H 0.115 0.885 33 H 0.135 0.865 34 H 0.097 0.903 35 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -9.424 -11.836 -8.263 17.239 hybrid contribution -0.517 1.664 0.485 1.809 sum -9.941 -10.172 -7.778 16.210 Atomic orbital electron populations 1.20103 0.86851 1.02619 1.02864 1.25576 1.01015 0.93610 1.17342 1.21592 0.86168 1.00076 1.00144 1.66585 1.17151 1.15942 1.19698 1.23747 0.90933 0.91734 1.01642 1.43491 1.01108 1.10916 1.74012 1.21710 0.86546 0.87271 0.77300 1.90883 1.83161 1.14754 1.39080 1.20834 0.87253 0.90512 0.98794 0.88179 1.24406 0.95850 1.02828 0.98584 1.88013 1.16950 1.19185 1.83585 1.23937 0.98486 0.90546 0.91316 1.48737 1.35943 1.27640 1.24034 1.18192 0.84190 0.80885 0.78812 1.90638 1.42213 1.74734 1.35662 1.20846 1.19818 1.08436 1.08064 0.91046 1.25710 0.95018 0.98112 0.94430 1.70024 1.29495 1.32621 1.06754 0.86273 0.80375 0.80981 0.78947 1.18626 1.20064 1.20066 1.83684 0.97595 1.11044 1.73439 0.91602 0.90629 0.90688 0.80773 0.74789 0.86214 0.88487 0.86516 0.90277 0.91995 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.52 10.41 36.00 0.37 -0.15 16 2 C -0.25 -3.05 6.58 -35.99 -0.24 -3.29 16 3 C 0.07 1.08 11.24 -19.16 -0.22 0.86 16 4 N -0.47 -9.16 8.65 -15.12 -0.13 -9.29 16 5 C 0.29 4.72 8.02 -87.35 -0.70 4.02 16 6 N -0.64 -9.85 5.29 -13.07 -0.07 -9.92 16 7 C 0.49 9.89 6.34 -10.99 -0.07 9.82 16 8 O -0.42 -10.87 13.36 -12.88 -0.17 -11.04 16 9 C 0.14 2.51 2.86 -68.80 -0.20 2.31 16 10 H 0.10 1.80 8.14 -51.93 -0.42 1.38 16 11 C -0.07 -0.88 6.79 37.98 0.26 -0.62 16 12 S -0.30 -4.63 23.43 -107.50 -2.52 -7.15 16 13 C 0.19 3.56 7.00 60.30 0.42 3.98 16 14 N -0.62 -13.95 2.74 -171.05 -0.47 -14.42 16 15 C 0.57 16.24 6.68 -12.99 -0.09 16.15 16 16 O -0.55 -17.83 13.77 -13.23 -0.18 -18.01 16 17 C -0.54 -15.00 8.85 -35.63 -0.32 -15.32 16 18 H 0.07 1.81 6.35 -52.48 -0.33 1.48 16 19 C 0.09 2.46 5.50 -17.37 -0.10 2.36 16 20 N -0.76 -23.01 11.83 55.55 0.66 -22.35 16 21 Si 0.91 20.24 29.56 -169.99 -5.02 15.22 16 22 H -0.26 -5.58 7.11 56.52 0.40 -5.18 16 23 H -0.28 -6.08 7.11 56.52 0.40 -5.68 16 24 H -0.28 -5.96 7.11 56.52 0.40 -5.56 16 25 S 0.09 1.08 23.22 -107.50 -2.50 -1.42 16 26 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 27 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 28 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 29 H 0.18 2.26 8.06 -52.49 -0.42 1.84 16 30 H 0.42 4.30 8.67 -40.82 -0.35 3.94 16 31 H 0.12 1.08 8.14 -51.93 -0.42 0.66 16 32 H 0.10 1.18 7.85 -51.93 -0.41 0.77 16 33 H 0.12 2.16 6.84 -51.93 -0.36 1.80 16 34 H 0.08 1.42 8.14 -51.93 -0.42 1.00 16 35 H 0.27 7.39 8.29 -40.82 -0.34 7.06 16 LS Contribution 328.35 15.07 4.95 4.95 Total: -1.00 -39.68 328.35 -9.86 -49.54 By element: Atomic # 1 Polarization: 7.29 SS G_CDS: -3.54 Total: 3.75 kcal Atomic # 6 Polarization: 21.00 SS G_CDS: -0.86 Total: 20.14 kcal Atomic # 7 Polarization: -55.96 SS G_CDS: -0.01 Total: -55.97 kcal Atomic # 8 Polarization: -28.70 SS G_CDS: -0.35 Total: -29.06 kcal Atomic # 14 Polarization: 20.24 SS G_CDS: -5.02 Total: 15.22 kcal Atomic # 16 Polarization: -3.55 SS G_CDS: -5.01 Total: -8.57 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -39.68 -9.86 -49.54 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000184946445.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.661 kcal (2) G-P(sol) polarization free energy of solvation -39.680 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.981 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.862 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.542 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.119 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds