Wall clock time and date at job start Tue Mar 31 2020 14:48:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.33443 * 125.97198 * 2 1 4 4 N 1.31985 * 114.57002 * 180.02562 * 3 2 1 5 5 C 1.29624 * 116.91910 * 359.97438 * 4 3 2 6 6 N 1.39002 * 124.94557 * 180.26550 * 5 4 3 7 7 C 1.34778 * 120.00122 * 359.69134 * 6 5 4 8 8 O 1.21290 * 119.99631 * 0.02562 * 7 6 5 9 9 C 1.50693 * 120.00334 * 179.97438 * 7 6 5 10 10 H 1.08997 * 108.70525 * 300.70615 * 9 7 6 11 11 C 1.54561 * 108.75446 * 58.95969 * 9 7 6 12 12 S 1.84205 * 101.32782 * 144.06338 * 11 9 7 13 13 C 1.84070 * 93.91553 * 327.74657 * 12 11 9 14 14 N 1.45506 * 108.75668 * 182.45086 * 9 7 6 15 15 C 1.34773 * 122.43176 * 60.10810 * 14 9 7 16 16 O 1.21686 * 119.99631 * 0.02562 * 15 14 9 17 17 C 1.46371 * 120.00212 * 180.02562 * 15 14 9 18 18 H 1.08005 * 119.99704 * 0.02562 * 17 15 14 19 19 C 1.40047 * 120.00266 * 179.97438 * 17 15 14 20 20 N 1.30676 * 119.99737 * 0.02562 * 19 17 15 21 21 Si 1.86800 * 120.00251 * 180.02562 * 19 17 15 22 22 H 1.48502 * 109.46744 * 0.02562 * 21 19 17 23 23 H 1.48497 * 109.46934 * 120.00230 * 21 19 17 24 24 H 1.48499 * 109.47035 * 240.00486 * 21 19 17 25 25 S 1.70968 * 110.10954 * 359.97438 * 5 4 3 26 26 H 1.08993 * 109.47249 * 180.02562 * 1 2 3 27 27 H 1.09005 * 109.47230 * 300.00252 * 1 2 3 28 28 H 1.09002 * 109.47133 * 60.00046 * 1 2 3 29 29 H 1.07998 * 122.71334 * 0.02562 * 3 2 1 30 30 H 0.96995 * 119.99848 * 179.69527 * 6 5 4 31 31 H 1.08995 * 111.05736 * 262.07862 * 11 9 7 32 32 H 1.09004 * 111.04966 * 26.05298 * 11 9 7 33 33 H 1.08993 * 110.78313 * 151.71908 * 13 12 11 34 34 H 1.09006 * 110.77607 * 274.96455 * 13 12 11 35 35 H 0.96998 * 119.99958 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2908 1.0800 0.0000 4 7 3.5846 0.8190 -0.0005 5 6 3.9313 -0.4300 -0.0005 6 7 5.2422 -0.8923 0.0043 7 6 6.2660 -0.0158 0.0031 8 8 6.0434 1.1765 -0.0018 9 6 7.6871 -0.5170 0.0088 10 1 7.8392 -1.1265 0.8995 11 6 7.9079 -1.3994 -1.2408 12 16 9.6486 -0.9820 -1.6755 13 6 9.5173 0.7512 -1.0697 14 7 8.5861 0.6258 0.0650 15 6 8.5704 1.5083 1.0835 16 8 7.7845 1.3643 2.0013 17 6 9.4987 2.6400 1.0857 18 1 10.1959 2.7681 0.2708 19 6 9.4821 3.5574 2.1437 20 7 8.6381 3.4027 3.1293 21 14 10.6663 5.0020 2.1461 22 1 11.5113 4.9513 0.9260 23 1 9.8973 6.2723 2.1628 24 1 11.5312 4.9311 3.3512 25 16 2.5417 -1.4258 0.0010 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3634 0.5139 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 1.8982 2.0861 0.0004 30 1 5.4201 -1.8458 0.0085 31 1 7.8083 -2.4568 -0.9960 32 1 7.2259 -1.1191 -2.0435 33 1 10.4877 1.1189 -0.7365 34 1 9.1037 1.4003 -1.8415 35 1 8.6268 4.0378 3.8624 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000184946445.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:48:02 Heat of formation + Delta-G solvation = -22.327618 kcal Electronic energy + Delta-G solvation = -23253.564496 eV Core-core repulsion = 19697.752206 eV Total energy + Delta-G solvation = -3555.812290 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 327.050 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.79628 -40.47181 -39.10093 -36.59486 -36.13938 -34.65183 -33.24850 -32.20743 -28.44224 -28.12688 -27.59355 -25.84806 -24.60543 -23.05946 -21.44206 -20.50565 -19.63184 -18.74245 -18.17412 -17.99279 -17.60146 -17.27081 -16.69999 -16.20918 -15.93005 -15.70014 -15.40882 -15.39842 -14.77415 -14.48689 -14.21659 -14.03009 -13.89328 -13.77951 -13.57396 -13.32286 -13.14043 -12.91154 -12.73879 -12.43858 -12.17840 -12.05518 -11.95410 -11.74042 -11.14445 -10.97960 -10.30908 -10.20744 -9.91735 -9.40995 -9.16564 -8.87339 -8.33761 -6.90332 -0.29722 -0.06720 0.59363 0.65427 0.95095 1.35967 1.36803 1.47466 1.54387 1.76651 2.03688 2.17923 2.44874 2.48805 3.19097 3.28315 3.60442 3.80757 3.96701 4.08878 4.26302 4.26800 4.33572 4.43119 4.51531 4.78520 4.80933 4.91376 5.13098 5.27464 5.28877 5.34630 5.83889 6.00748 6.16010 6.81543 6.84978 7.17247 7.20429 8.38869 8.61776 Molecular weight = 327.05amu Principal moments of inertia in cm(-1) A = 0.013110 B = 0.004195 C = 0.003328 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2135.326799 B = 6673.612871 C = 8410.195717 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 C -0.233 4.233 3 C 0.028 3.972 4 N -0.534 5.534 5 C 0.238 3.762 6 N -0.625 5.625 7 C 0.494 3.506 8 O -0.491 6.491 9 C 0.130 3.870 10 H 0.101 0.899 11 C -0.052 4.052 12 S -0.267 6.267 13 C 0.177 3.823 14 N -0.630 5.630 15 C 0.562 3.438 16 O -0.606 6.606 17 C -0.564 4.564 18 H 0.090 0.910 19 C 0.029 3.971 20 N -0.819 5.819 21 Si 0.996 3.004 22 H -0.243 1.243 23 H -0.273 1.273 24 H -0.264 1.264 25 S 0.193 5.807 26 H 0.086 0.914 27 H 0.087 0.913 28 H 0.092 0.908 29 H 0.179 0.821 30 H 0.438 0.562 31 H 0.172 0.828 32 H 0.111 0.889 33 H 0.112 0.888 34 H 0.079 0.921 35 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.726 -13.856 -10.124 20.237 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.355 4.355 3 C -0.122 4.122 4 N -0.256 5.256 5 C -0.130 4.130 6 N -0.281 5.281 7 C 0.275 3.725 8 O -0.359 6.359 9 C 0.019 3.981 10 H 0.119 0.881 11 C -0.200 4.200 12 S -0.041 6.041 13 C -0.057 4.057 14 N -0.370 5.370 15 C 0.368 3.632 16 O -0.490 6.490 17 C -0.601 4.601 18 H 0.108 0.892 19 C -0.186 4.186 20 N -0.448 5.448 21 Si 0.815 3.185 22 H -0.166 1.166 23 H -0.199 1.199 24 H -0.189 1.189 25 S 0.443 5.557 26 H 0.105 0.895 27 H 0.106 0.894 28 H 0.111 0.889 29 H 0.196 0.804 30 H 0.279 0.721 31 H 0.190 0.810 32 H 0.130 0.870 33 H 0.130 0.870 34 H 0.098 0.902 35 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -10.041 -14.313 -9.964 20.124 hybrid contribution -0.547 2.204 0.923 2.451 sum -10.588 -12.109 -9.042 18.452 Atomic orbital electron populations 1.20334 0.83598 1.04438 1.04271 1.26281 1.03136 0.93351 1.12763 1.21724 0.85586 1.01540 1.03344 1.66491 1.19751 1.18804 1.20527 1.24013 0.92284 0.92706 1.03947 1.43065 1.00523 1.11415 1.73060 1.21948 0.87929 0.86768 0.75847 1.90851 1.84367 1.17744 1.42902 1.21095 0.85730 0.89671 1.01568 0.88102 1.24618 0.94626 1.04503 0.96292 1.87876 1.18334 1.15212 1.82721 1.23960 0.97472 0.94037 0.90228 1.48325 1.37130 1.27843 1.23652 1.18384 0.83568 0.81872 0.79359 1.90577 1.43893 1.76369 1.38203 1.21422 1.20503 1.09124 1.09009 0.89168 1.26985 0.96746 1.01433 0.93457 1.70207 1.32157 1.34454 1.08031 0.84994 0.77610 0.75896 0.79974 1.16564 1.19873 1.18855 1.83226 0.93431 1.08074 1.70966 0.89493 0.89442 0.88946 0.80400 0.72082 0.80987 0.87045 0.86978 0.90243 0.91698 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.85 10.41 71.23 0.74 -0.11 16 2 C -0.23 -5.20 6.58 24.60 0.16 -5.04 16 3 C 0.03 0.87 11.24 83.58 0.94 1.81 16 4 N -0.53 -21.66 8.65 -201.76 -1.75 -23.41 16 5 C 0.24 7.81 8.02 179.20 1.44 9.25 16 6 N -0.63 -19.16 5.29 -313.64 -1.66 -20.82 16 7 C 0.49 20.55 6.34 87.65 0.56 21.11 16 8 O -0.49 -27.37 13.36 14.56 0.19 -27.17 16 9 C 0.13 4.77 2.86 44.96 0.13 4.90 16 10 H 0.10 3.65 8.14 -2.39 -0.02 3.63 16 11 C -0.05 -1.21 6.79 72.51 0.49 -0.71 16 12 S -0.27 -7.58 23.43 -56.49 -1.32 -8.91 16 13 C 0.18 6.63 7.00 127.61 0.89 7.53 16 14 N -0.63 -29.21 2.74 -813.31 -2.23 -31.44 16 15 C 0.56 33.62 6.68 86.36 0.58 34.20 16 16 O -0.61 -41.70 13.77 13.32 0.18 -41.51 16 17 C -0.56 -32.94 8.85 24.83 0.22 -32.72 16 18 H 0.09 4.70 6.35 -2.91 -0.02 4.68 16 19 C 0.03 1.67 5.50 85.30 0.47 2.14 16 20 N -0.82 -52.24 11.83 21.84 0.26 -51.98 16 21 Si 1.00 42.58 29.56 68.60 2.03 44.61 16 22 H -0.24 -9.48 7.11 99.48 0.71 -8.77 16 23 H -0.27 -11.50 7.11 99.48 0.71 -10.80 16 24 H -0.26 -10.69 7.11 99.48 0.71 -9.98 16 25 S 0.19 4.00 23.22 -56.49 -1.31 2.69 16 26 H 0.09 0.78 8.14 -2.39 -0.02 0.76 16 27 H 0.09 1.00 8.14 -2.38 -0.02 0.98 16 28 H 0.09 0.95 8.14 -2.39 -0.02 0.93 16 29 H 0.18 4.95 8.06 -2.91 -0.02 4.93 16 30 H 0.44 8.30 8.67 -92.71 -0.80 7.50 16 31 H 0.17 2.24 8.14 -2.39 -0.02 2.22 16 32 H 0.11 2.37 7.85 -2.38 -0.02 2.35 16 33 H 0.11 4.22 6.84 -2.39 -0.02 4.20 16 34 H 0.08 2.93 8.14 -2.38 -0.02 2.91 16 35 H 0.27 15.82 8.29 -92.71 -0.77 15.05 16 Total: -1.00 -96.35 328.35 1.37 -94.98 By element: Atomic # 1 Polarization: 20.24 SS G_CDS: 0.35 Total: 20.60 kcal Atomic # 6 Polarization: 35.74 SS G_CDS: 6.62 Total: 42.35 kcal Atomic # 7 Polarization: -122.27 SS G_CDS: -5.37 Total: -127.64 kcal Atomic # 8 Polarization: -69.06 SS G_CDS: 0.38 Total: -68.68 kcal Atomic # 14 Polarization: 42.58 SS G_CDS: 2.03 Total: 44.61 kcal Atomic # 16 Polarization: -3.58 SS G_CDS: -2.64 Total: -6.22 kcal Total: -96.35 1.37 -94.98 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000184946445.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.655 kcal (2) G-P(sol) polarization free energy of solvation -96.350 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.695 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.367 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -94.983 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.328 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds