Wall clock time and date at job start Tue Mar 31 2020 15:16:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30667 * 1 3 3 Si 1.86803 * 120.00407 * 2 1 4 4 H 1.48507 * 109.47082 * 269.99929 * 3 2 1 5 5 H 1.48500 * 109.46957 * 29.99629 * 3 2 1 6 6 H 1.48498 * 109.47015 * 149.99975 * 3 2 1 7 7 C 1.40049 * 119.99902 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00350 * 179.97438 * 7 2 1 9 9 C 1.46371 * 119.99939 * 359.97438 * 7 2 1 10 10 O 1.21690 * 120.00040 * 0.02562 * 9 7 2 11 11 N 1.34778 * 120.00378 * 180.27804 * 9 7 2 12 12 C 1.46495 * 120.00330 * 179.72765 * 11 9 7 13 13 C 1.53003 * 109.47190 * 179.97438 * 12 11 9 14 14 C 1.50697 * 112.84632 * 50.33549 * 13 12 11 15 15 C 1.38241 * 119.99379 * 245.77693 * 14 13 12 16 16 C 1.38200 * 120.03057 * 179.97438 * 15 14 13 17 17 C 1.38390 * 120.00916 * 0.02562 * 16 15 14 18 18 Cl 1.73599 * 120.00496 * 179.97438 * 17 16 15 19 19 C 1.38300 * 119.98833 * 359.97438 * 17 16 15 20 20 C 1.38344 * 119.99459 * 65.50483 * 14 13 12 21 21 Cl 1.73599 * 120.00565 * 0.02562 * 20 14 13 22 22 C 1.53771 * 113.61616 * 279.13726 * 13 12 11 23 23 C 1.54047 * 86.99050 * 270.83625 * 22 13 12 24 24 C 1.53783 * 113.61499 * 181.52661 * 13 12 11 25 25 H 0.97006 * 119.99540 * 0.02562 * 1 2 3 26 26 H 0.97005 * 119.99659 * 359.72802 * 11 9 7 27 27 H 1.09000 * 109.47205 * 300.00265 * 12 11 9 28 28 H 1.09006 * 109.47209 * 60.00015 * 12 11 9 29 29 H 1.07997 * 119.98929 * 359.95860 * 15 14 13 30 30 H 1.07993 * 119.99630 * 179.97438 * 16 15 14 31 31 H 1.07997 * 120.01735 * 180.02562 * 19 17 16 32 32 H 1.08998 * 113.61641 * 25.43155 * 22 13 12 33 33 H 1.09005 * 113.61323 * 156.33363 * 22 13 12 34 34 H 1.08999 * 113.62845 * 220.02303 * 23 22 13 35 35 H 1.09003 * 113.68866 * 89.12200 * 23 22 13 36 36 H 1.08997 * 113.61468 * 203.66908 * 24 13 12 37 37 H 1.08996 * 113.61427 * 334.49016 * 24 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2408 1.6177 0.0000 4 1 2.4884 2.0464 -1.4001 5 1 1.4382 2.6527 0.7000 6 1 3.5383 1.4400 0.7000 7 6 2.0069 -1.2129 -0.0005 8 1 3.0869 -1.2130 -0.0010 9 6 1.2750 -2.4805 -0.0005 10 8 0.0581 -2.4804 -0.0005 11 7 1.9488 -3.6477 0.0046 12 6 1.2162 -4.9164 0.0106 13 6 2.2104 -6.0794 0.0150 14 6 3.2652 -5.9435 1.0828 15 6 4.5887 -5.7619 0.7276 16 6 5.5565 -5.6366 1.7061 17 6 5.2011 -5.6935 3.0424 18 17 6.4170 -5.5368 4.2715 19 6 3.8771 -5.8751 3.3984 20 6 2.9079 -5.9948 2.4183 21 17 1.2449 -6.2164 2.8642 22 6 2.7798 -6.4083 -1.3750 23 6 1.5831 -7.3623 -1.5500 24 6 1.5400 -7.4630 -0.0160 25 1 -0.4850 0.8401 -0.0004 26 1 2.9188 -3.6478 0.0043 27 1 0.5898 -4.9700 0.9010 28 1 0.5893 -4.9782 -0.8789 29 1 4.8667 -5.7181 -0.3151 30 1 6.5904 -5.4952 1.4280 31 1 3.5992 -5.9191 4.4411 32 1 2.7698 -5.5624 -2.0623 33 1 3.7431 -6.9175 -1.3430 34 1 1.8404 -8.3002 -2.0421 35 1 0.7026 -6.8858 -1.9811 36 1 2.1649 -8.2601 0.3869 37 1 0.5303 -7.4683 0.3944 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000185913104.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:16:08 Heat of formation + Delta-G solvation = -12.725277 kcal Electronic energy + Delta-G solvation = -23367.034994 eV Core-core repulsion = 19775.258929 eV Total energy + Delta-G solvation = -3591.776065 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 327.053 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.59724 -38.37478 -36.86211 -36.67731 -36.20170 -32.99357 -32.15156 -31.11222 -30.82007 -27.58966 -25.96040 -25.54577 -23.68416 -22.72855 -21.72821 -19.64004 -18.65284 -17.56742 -17.04232 -15.99907 -15.91779 -15.32754 -15.03591 -14.70145 -14.18028 -14.03329 -13.97153 -13.82528 -13.32506 -12.87953 -12.47118 -12.38547 -12.16674 -12.06711 -11.85012 -11.59530 -11.27081 -11.13246 -11.07298 -11.04175 -10.98092 -10.81506 -10.48442 -10.35153 -10.30494 -10.16419 -9.94528 -8.99280 -8.81270 -8.56177 -7.56549 -7.40856 -6.14640 -4.59371 0.93992 1.03909 1.81862 2.31732 3.15824 3.22758 3.26205 3.37999 4.12265 4.38022 4.46636 4.62524 4.64504 4.75073 4.84185 4.91814 4.98637 5.15689 5.31438 5.35146 5.57615 5.63458 5.71110 5.76730 5.83435 5.90041 5.97899 6.01188 6.07712 6.19725 6.25459 6.39231 6.46554 6.60336 6.63469 7.46935 7.97485 8.14840 8.37403 9.06784 9.59050 10.64660 10.84010 Molecular weight = 327.05amu Principal moments of inertia in cm(-1) A = 0.009952 B = 0.004872 C = 0.003875 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2812.749458 B = 5745.767526 C = 7223.585256 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.768 5.768 2 C 0.089 3.911 3 Si 0.904 3.096 4 H -0.272 1.272 5 H -0.279 1.279 6 H -0.265 1.265 7 C -0.545 4.545 8 H 0.065 0.935 9 C 0.557 3.443 10 O -0.581 6.581 11 N -0.763 5.763 12 C 0.156 3.844 13 C -0.057 4.057 14 C -0.039 4.039 15 C -0.096 4.096 16 C -0.104 4.104 17 C -0.030 4.030 18 Cl -0.068 7.068 19 C -0.102 4.102 20 C -0.012 4.012 21 Cl -0.048 7.048 22 C -0.132 4.132 23 C -0.139 4.139 24 C -0.120 4.120 25 H 0.267 0.733 26 H 0.377 0.623 27 H 0.063 0.937 28 H 0.054 0.946 29 H 0.143 0.857 30 H 0.138 0.862 31 H 0.141 0.859 32 H 0.078 0.922 33 H 0.082 0.918 34 H 0.067 0.933 35 H 0.085 0.915 36 H 0.081 0.919 37 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.691 -15.702 2.846 19.208 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.397 5.397 2 C -0.131 4.131 3 Si 0.729 3.271 4 H -0.198 1.198 5 H -0.205 1.205 6 H -0.190 1.190 7 C -0.582 4.582 8 H 0.083 0.917 9 C 0.361 3.639 10 O -0.464 6.464 11 N -0.418 5.418 12 C 0.031 3.969 13 C -0.057 4.057 14 C -0.040 4.040 15 C -0.114 4.114 16 C -0.122 4.122 17 C -0.057 4.057 18 Cl -0.039 7.039 19 C -0.121 4.121 20 C -0.039 4.039 21 Cl -0.019 7.019 22 C -0.170 4.170 23 C -0.176 4.176 24 C -0.158 4.158 25 H 0.078 0.922 26 H 0.209 0.791 27 H 0.081 0.919 28 H 0.072 0.928 29 H 0.161 0.839 30 H 0.155 0.845 31 H 0.159 0.841 32 H 0.096 0.904 33 H 0.101 0.899 34 H 0.085 0.915 35 H 0.103 0.897 36 H 0.099 0.901 37 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 9.541 -15.601 3.006 18.533 hybrid contribution 0.975 0.905 0.300 1.363 sum 10.515 -14.697 3.306 18.371 Atomic orbital electron populations 1.70023 1.06999 1.27106 1.35583 1.25676 0.94572 1.00151 0.92666 0.86431 0.80232 0.81653 0.78788 1.19770 1.20478 1.18950 1.20859 0.93458 0.89470 1.54386 0.91661 1.18163 0.87159 0.82357 0.76264 1.90598 1.14082 1.86860 1.54835 1.46060 1.08358 1.04663 1.82752 1.20751 0.92345 0.82225 1.01590 1.21212 0.94705 0.96851 0.92961 1.19675 0.94730 0.97201 0.92346 1.21030 0.91080 0.99219 1.00065 1.21095 1.00729 0.99940 0.90480 1.20672 0.89555 1.05532 0.89973 1.98370 1.54813 1.96304 1.54406 1.20847 0.90309 1.00972 1.00018 1.20576 0.86230 1.03810 0.93261 1.98386 1.15846 1.95031 1.92651 1.23110 0.97962 0.99969 0.95931 1.22847 0.99050 0.99542 0.96176 1.22938 1.01227 0.95007 0.96610 0.92207 0.79135 0.91939 0.92772 0.83904 0.84461 0.84142 0.90370 0.89909 0.91474 0.89687 0.90071 0.90704 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -23.26 11.83 55.55 0.66 -22.60 16 2 C 0.09 2.51 5.50 -17.37 -0.10 2.41 16 3 Si 0.90 20.38 29.56 -169.99 -5.02 15.36 16 4 H -0.27 -5.98 7.11 56.52 0.40 -5.57 16 5 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 6 H -0.27 -5.81 7.11 56.52 0.40 -5.41 16 7 C -0.54 -15.50 9.54 -35.63 -0.34 -15.84 16 8 H 0.07 1.71 7.85 -52.48 -0.41 1.30 16 9 C 0.56 15.86 7.75 -12.99 -0.10 15.76 16 10 O -0.58 -18.89 15.02 5.20 0.08 -18.82 16 11 N -0.76 -16.90 5.31 -61.72 -0.33 -17.23 16 12 C 0.16 2.95 4.72 -4.04 -0.02 2.93 16 13 C -0.06 -0.78 0.40 -154.85 -0.06 -0.84 16 14 C -0.04 -0.52 3.89 -104.58 -0.41 -0.92 16 15 C -0.10 -1.11 8.80 -39.59 -0.35 -1.45 16 16 C -0.10 -1.14 9.83 -39.54 -0.39 -1.53 16 17 C -0.03 -0.37 6.32 -39.50 -0.25 -0.62 16 18 Cl -0.07 -0.74 28.96 -51.86 -1.50 -2.25 16 19 C -0.10 -1.31 9.62 -39.51 -0.38 -1.69 16 20 C -0.01 -0.16 6.19 -39.50 -0.24 -0.41 16 21 Cl -0.05 -0.71 24.88 -51.86 -1.29 -2.00 16 22 C -0.13 -1.54 6.32 -25.78 -0.16 -1.70 16 23 C -0.14 -1.52 7.74 -25.77 -0.20 -1.72 16 24 C -0.12 -1.40 6.13 -25.91 -0.16 -1.56 16 25 H 0.27 7.35 8.29 -40.82 -0.34 7.01 16 26 H 0.38 7.55 7.53 -40.82 -0.31 7.24 16 27 H 0.06 1.29 6.05 -51.93 -0.31 0.97 16 28 H 0.05 1.09 7.33 -51.93 -0.38 0.71 16 29 H 0.14 1.37 6.41 -52.49 -0.34 1.04 16 30 H 0.14 1.21 8.06 -52.49 -0.42 0.79 16 31 H 0.14 1.63 8.06 -52.49 -0.42 1.21 16 32 H 0.08 1.01 8.10 -51.93 -0.42 0.59 16 33 H 0.08 0.79 6.79 -51.93 -0.35 0.44 16 34 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 35 H 0.08 1.00 7.64 -51.93 -0.40 0.61 16 36 H 0.08 0.86 8.09 -51.93 -0.42 0.44 16 37 H 0.07 0.92 7.91 -51.93 -0.41 0.51 16 LS Contribution 335.86 15.07 5.06 5.06 Total: -1.00 -33.72 335.86 -9.66 -43.37 By element: Atomic # 1 Polarization: 10.43 SS G_CDS: -4.15 Total: 6.28 kcal Atomic # 6 Polarization: -4.03 SS G_CDS: -3.16 Total: -7.18 kcal Atomic # 7 Polarization: -40.16 SS G_CDS: 0.33 Total: -39.83 kcal Atomic # 8 Polarization: -18.89 SS G_CDS: 0.08 Total: -18.82 kcal Atomic # 14 Polarization: 20.38 SS G_CDS: -5.02 Total: 15.36 kcal Atomic # 17 Polarization: -1.45 SS G_CDS: -2.79 Total: -4.24 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -33.72 -9.66 -43.37 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000185913104.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.649 kcal (2) G-P(sol) polarization free energy of solvation -33.718 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.069 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.657 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.375 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.725 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds