Wall clock time and date at job start Tue Mar 31 2020 15:16:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30667 * 1 3 3 Si 1.86803 * 120.00407 * 2 1 4 4 H 1.48507 * 109.47082 * 269.99929 * 3 2 1 5 5 H 1.48500 * 109.46957 * 29.99629 * 3 2 1 6 6 H 1.48498 * 109.47015 * 149.99975 * 3 2 1 7 7 C 1.40049 * 119.99902 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00350 * 179.97438 * 7 2 1 9 9 C 1.46371 * 119.99939 * 359.97438 * 7 2 1 10 10 O 1.21690 * 120.00040 * 0.02562 * 9 7 2 11 11 N 1.34778 * 120.00378 * 180.27804 * 9 7 2 12 12 C 1.46495 * 120.00330 * 179.72765 * 11 9 7 13 13 C 1.53003 * 109.47190 * 179.97438 * 12 11 9 14 14 C 1.50697 * 112.84632 * 50.33549 * 13 12 11 15 15 C 1.38241 * 119.99379 * 245.77693 * 14 13 12 16 16 C 1.38200 * 120.03057 * 179.97438 * 15 14 13 17 17 C 1.38390 * 120.00916 * 0.02562 * 16 15 14 18 18 Cl 1.73599 * 120.00496 * 179.97438 * 17 16 15 19 19 C 1.38300 * 119.98833 * 359.97438 * 17 16 15 20 20 C 1.38344 * 119.99459 * 65.50483 * 14 13 12 21 21 Cl 1.73599 * 120.00565 * 0.02562 * 20 14 13 22 22 C 1.53771 * 113.61616 * 279.13726 * 13 12 11 23 23 C 1.54047 * 86.99050 * 270.83625 * 22 13 12 24 24 C 1.53783 * 113.61499 * 181.52661 * 13 12 11 25 25 H 0.97006 * 119.99540 * 0.02562 * 1 2 3 26 26 H 0.97005 * 119.99659 * 359.72802 * 11 9 7 27 27 H 1.09000 * 109.47205 * 300.00265 * 12 11 9 28 28 H 1.09006 * 109.47209 * 60.00015 * 12 11 9 29 29 H 1.07997 * 119.98929 * 359.95860 * 15 14 13 30 30 H 1.07993 * 119.99630 * 179.97438 * 16 15 14 31 31 H 1.07997 * 120.01735 * 180.02562 * 19 17 16 32 32 H 1.08998 * 113.61641 * 25.43155 * 22 13 12 33 33 H 1.09005 * 113.61323 * 156.33363 * 22 13 12 34 34 H 1.08999 * 113.62845 * 220.02303 * 23 22 13 35 35 H 1.09003 * 113.68866 * 89.12200 * 23 22 13 36 36 H 1.08997 * 113.61468 * 203.66908 * 24 13 12 37 37 H 1.08996 * 113.61427 * 334.49016 * 24 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2408 1.6177 0.0000 4 1 2.4884 2.0464 -1.4001 5 1 1.4382 2.6527 0.7000 6 1 3.5383 1.4400 0.7000 7 6 2.0069 -1.2129 -0.0005 8 1 3.0869 -1.2130 -0.0010 9 6 1.2750 -2.4805 -0.0005 10 8 0.0581 -2.4804 -0.0005 11 7 1.9488 -3.6477 0.0046 12 6 1.2162 -4.9164 0.0106 13 6 2.2104 -6.0794 0.0150 14 6 3.2652 -5.9435 1.0828 15 6 4.5887 -5.7619 0.7276 16 6 5.5565 -5.6366 1.7061 17 6 5.2011 -5.6935 3.0424 18 17 6.4170 -5.5368 4.2715 19 6 3.8771 -5.8751 3.3984 20 6 2.9079 -5.9948 2.4183 21 17 1.2449 -6.2164 2.8642 22 6 2.7798 -6.4083 -1.3750 23 6 1.5831 -7.3623 -1.5500 24 6 1.5400 -7.4630 -0.0160 25 1 -0.4850 0.8401 -0.0004 26 1 2.9188 -3.6478 0.0043 27 1 0.5898 -4.9700 0.9010 28 1 0.5893 -4.9782 -0.8789 29 1 4.8667 -5.7181 -0.3151 30 1 6.5904 -5.4952 1.4280 31 1 3.5992 -5.9191 4.4411 32 1 2.7698 -5.5624 -2.0623 33 1 3.7431 -6.9175 -1.3430 34 1 1.8404 -8.3002 -2.0421 35 1 0.7026 -6.8858 -1.9811 36 1 2.1649 -8.2601 0.3869 37 1 0.5303 -7.4683 0.3944 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000185913104.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:16:07 Heat of formation + Delta-G solvation = -33.211297 kcal Electronic energy + Delta-G solvation = -23367.923335 eV Core-core repulsion = 19775.258929 eV Total energy + Delta-G solvation = -3592.664406 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 327.053 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.66023 -39.50165 -38.80533 -37.67641 -37.19083 -34.94221 -34.22556 -32.09535 -31.84983 -29.36690 -27.47852 -26.71269 -24.96673 -23.68331 -22.71580 -21.66722 -19.93723 -18.93647 -18.44154 -17.41852 -17.11256 -16.95171 -16.16960 -15.91547 -15.83371 -15.43405 -15.16257 -14.92426 -14.82512 -14.26871 -13.91514 -13.69571 -13.45998 -13.13922 -13.06308 -12.89292 -12.86537 -12.70056 -12.58130 -12.35387 -12.06502 -12.02605 -12.01151 -11.92968 -11.44046 -11.28651 -11.03819 -10.90538 -9.95755 -9.83351 -9.57328 -9.36083 -8.27023 -6.82564 -0.03605 0.08747 0.85988 1.31349 1.39522 1.41271 1.56008 2.25000 2.41757 2.50449 3.06211 3.42035 3.58291 3.68144 3.80254 3.81915 3.88424 3.96380 4.05495 4.26931 4.39209 4.58083 4.66101 4.73698 4.83254 4.86551 4.93929 4.99897 5.07939 5.12085 5.15796 5.26544 5.33196 5.39192 5.53336 5.58765 5.90321 6.26091 6.31664 6.89186 7.59052 8.53057 8.70694 Molecular weight = 327.05amu Principal moments of inertia in cm(-1) A = 0.009952 B = 0.004872 C = 0.003875 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2812.749458 B = 5745.767526 C = 7223.585256 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.822 5.822 2 C 0.030 3.970 3 Si 0.993 3.007 4 H -0.260 1.260 5 H -0.274 1.274 6 H -0.250 1.250 7 C -0.572 4.572 8 H 0.084 0.916 9 C 0.541 3.459 10 O -0.633 6.633 11 N -0.745 5.745 12 C 0.159 3.841 13 C -0.057 4.057 14 C -0.052 4.052 15 C -0.092 4.092 16 C -0.097 4.097 17 C -0.035 4.035 18 Cl -0.058 7.058 19 C -0.111 4.111 20 C -0.030 4.030 21 Cl -0.066 7.066 22 C -0.123 4.123 23 C -0.135 4.135 24 C -0.113 4.113 25 H 0.273 0.727 26 H 0.390 0.610 27 H 0.041 0.959 28 H 0.035 0.965 29 H 0.168 0.832 30 H 0.165 0.835 31 H 0.145 0.855 32 H 0.063 0.937 33 H 0.115 0.885 34 H 0.094 0.906 35 H 0.068 0.932 36 H 0.101 0.899 37 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.040 -15.908 2.333 21.346 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.452 5.452 2 C -0.185 4.185 3 Si 0.812 3.188 4 H -0.184 1.184 5 H -0.199 1.199 6 H -0.173 1.173 7 C -0.608 4.608 8 H 0.102 0.898 9 C 0.344 3.656 10 O -0.521 6.521 11 N -0.399 5.399 12 C 0.035 3.965 13 C -0.058 4.058 14 C -0.053 4.053 15 C -0.110 4.110 16 C -0.115 4.115 17 C -0.062 4.062 18 Cl -0.029 7.029 19 C -0.130 4.130 20 C -0.057 4.057 21 Cl -0.037 7.037 22 C -0.160 4.160 23 C -0.172 4.172 24 C -0.151 4.151 25 H 0.083 0.917 26 H 0.224 0.776 27 H 0.059 0.941 28 H 0.053 0.947 29 H 0.185 0.815 30 H 0.183 0.817 31 H 0.163 0.837 32 H 0.082 0.918 33 H 0.133 0.867 34 H 0.112 0.888 35 H 0.086 0.914 36 H 0.119 0.881 37 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 12.940 -15.860 2.493 20.620 hybrid contribution -0.039 0.903 0.507 1.036 sum 12.900 -14.957 3.000 19.978 Atomic orbital electron populations 1.70196 1.09482 1.28753 1.36736 1.26920 0.95464 1.04800 0.91272 0.85091 0.78807 0.75357 0.79496 1.18404 1.19935 1.17319 1.21384 0.94525 0.90176 1.54754 0.89776 1.18542 0.86760 0.84301 0.75955 1.90552 1.16280 1.88005 1.57232 1.45665 1.08895 1.04449 1.80938 1.20739 0.93361 0.82813 0.99618 1.21030 0.94229 0.95542 0.94984 1.19735 0.95492 0.98353 0.91758 1.21313 0.90130 0.98094 1.01461 1.21431 1.01993 0.98340 0.89766 1.20823 0.89387 1.05146 0.90829 1.98376 1.54179 1.96217 1.54173 1.20963 0.90728 1.01190 1.00166 1.20760 0.85629 1.05221 0.94063 1.98378 1.17325 1.95221 1.92807 1.23143 0.99599 0.99754 0.93531 1.22819 0.98241 1.00501 0.95621 1.22939 1.00728 0.94127 0.97303 0.91709 0.77630 0.94061 0.94699 0.81507 0.81698 0.83703 0.91806 0.86694 0.88758 0.91369 0.88101 0.91973 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -51.11 11.83 21.84 0.26 -50.85 16 2 C 0.03 1.72 5.50 85.31 0.47 2.19 16 3 Si 0.99 41.45 29.56 68.60 2.03 43.48 16 4 H -0.26 -10.24 7.11 99.48 0.71 -9.53 16 5 H -0.27 -11.12 7.11 99.48 0.71 -10.41 16 6 H -0.25 -9.72 7.11 99.48 0.71 -9.01 16 7 C -0.57 -32.76 9.54 24.83 0.24 -32.52 16 8 H 0.08 4.33 7.85 -2.91 -0.02 4.31 16 9 C 0.54 31.75 7.75 86.36 0.67 32.42 16 10 O -0.63 -43.22 15.02 -4.32 -0.06 -43.28 16 11 N -0.75 -33.63 5.31 -467.40 -2.48 -36.11 16 12 C 0.16 6.23 4.72 86.38 0.41 6.64 16 13 C -0.06 -1.53 0.40 -52.40 -0.02 -1.55 16 14 C -0.05 -1.33 3.89 -19.84 -0.08 -1.41 16 15 C -0.09 -1.84 8.80 22.26 0.20 -1.64 16 16 C -0.10 -1.82 9.83 22.30 0.22 -1.60 16 17 C -0.03 -0.76 6.32 22.32 0.14 -0.62 16 18 Cl -0.06 -1.16 28.96 -2.72 -0.08 -1.23 16 19 C -0.11 -2.75 9.62 22.31 0.21 -2.54 16 20 C -0.03 -0.82 6.19 22.32 0.14 -0.68 16 21 Cl -0.07 -2.01 24.88 -2.72 -0.07 -2.07 16 22 C -0.12 -2.59 6.32 31.21 0.20 -2.39 16 23 C -0.13 -2.73 7.74 31.21 0.24 -2.49 16 24 C -0.11 -2.53 6.13 31.12 0.19 -2.34 16 25 H 0.27 15.40 8.29 -92.70 -0.77 14.63 16 26 H 0.39 15.42 7.53 -92.70 -0.70 14.73 16 27 H 0.04 1.80 6.05 -2.39 -0.01 1.78 16 28 H 0.03 1.48 7.33 -2.38 -0.02 1.47 16 29 H 0.17 2.49 6.41 -2.91 -0.02 2.47 16 30 H 0.17 2.17 8.06 -2.91 -0.02 2.15 16 31 H 0.15 3.32 8.06 -2.91 -0.02 3.29 16 32 H 0.06 1.55 8.10 -2.39 -0.02 1.53 16 33 H 0.11 1.71 6.79 -2.38 -0.02 1.69 16 34 H 0.09 1.43 8.14 -2.39 -0.02 1.41 16 35 H 0.07 1.61 7.64 -2.39 -0.02 1.60 16 36 H 0.10 1.89 8.09 -2.39 -0.02 1.88 16 37 H 0.06 1.55 7.91 -2.39 -0.02 1.53 16 Total: -1.00 -76.35 335.86 3.24 -73.11 By element: Atomic # 1 Polarization: 25.07 SS G_CDS: 0.42 Total: 25.49 kcal Atomic # 6 Polarization: -11.76 SS G_CDS: 3.22 Total: -8.53 kcal Atomic # 7 Polarization: -84.74 SS G_CDS: -2.22 Total: -86.96 kcal Atomic # 8 Polarization: -43.22 SS G_CDS: -0.06 Total: -43.28 kcal Atomic # 14 Polarization: 41.45 SS G_CDS: 2.03 Total: 43.48 kcal Atomic # 17 Polarization: -3.16 SS G_CDS: -0.15 Total: -3.31 kcal Total: -76.35 3.24 -73.11 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000185913104.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.899 kcal (2) G-P(sol) polarization free energy of solvation -76.349 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.451 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.240 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.110 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.211 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds