Wall clock time and date at job start Tue Mar 31 2020 14:38:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86793 * 119.99820 * 2 1 4 4 H 1.48503 * 109.47305 * 359.97438 * 3 2 1 5 5 H 1.48502 * 109.47166 * 119.99674 * 3 2 1 6 6 H 1.48499 * 109.46987 * 239.99642 * 3 2 1 7 7 C 1.37870 * 119.99939 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00066 * 193.83475 * 7 2 1 9 9 C 1.50700 * 120.00275 * 13.83955 * 7 2 1 10 10 O 1.42897 * 112.94783 * 53.31840 * 9 7 2 11 11 C 1.53951 * 113.73930 * 281.58305 * 9 7 2 12 12 N 1.47585 * 86.11814 * 222.04471 * 11 9 7 13 13 C 1.34771 * 134.49296 * 204.63537 * 12 11 9 14 14 O 1.21279 * 120.00331 * 180.02562 * 13 12 11 15 15 C 1.50707 * 120.00011 * 0.02562 * 13 12 11 16 16 S 1.81401 * 109.47042 * 179.97438 * 15 13 12 17 17 C 1.76194 * 102.99754 * 179.97438 * 16 15 13 18 18 C 1.38942 * 120.08636 * 0.02562 * 17 16 15 19 19 C 1.38096 * 119.93374 * 179.97438 * 18 17 16 20 20 C 1.38307 * 120.10132 * 0.02562 * 19 18 17 21 21 C 1.38297 * 120.16659 * 359.97438 * 20 19 18 22 22 C 1.38195 * 120.06200 * 359.70047 * 21 20 19 23 23 Cl 1.73601 * 120.04383 * 180.29507 * 22 21 20 24 24 C 1.47584 * 91.01048 * 24.64339 * 12 11 9 25 25 H 0.97007 * 119.99483 * 185.87567 * 1 2 3 26 26 H 0.96698 * 114.00098 * 303.04147 * 10 9 7 27 27 H 1.08994 * 113.76900 * 336.35179 * 11 9 7 28 28 H 1.09010 * 113.76488 * 107.74641 * 11 9 7 29 29 H 1.08992 * 109.46728 * 299.99633 * 15 13 12 30 30 H 1.08994 * 109.46926 * 59.99489 * 15 13 12 31 31 H 1.07997 * 120.02982 * 0.02562 * 18 17 16 32 32 H 1.07996 * 119.95180 * 179.97438 * 19 18 17 33 33 H 1.07998 * 119.91967 * 179.97438 * 20 19 18 34 34 H 1.07994 * 119.96936 * 180.02562 * 21 20 19 35 35 H 1.09003 * 113.76727 * 221.05145 * 24 12 11 36 36 H 1.09000 * 113.86995 * 89.67487 * 24 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 1.2841 2.7464 -0.0006 5 1 3.1028 1.6964 1.2126 6 1 3.1029 1.6963 -1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0610 -1.2075 0.2242 9 6 1.2839 -2.4803 -0.3111 10 8 0.5652 -2.4315 -1.5452 11 6 0.4600 -3.0303 0.8674 12 7 0.9831 -4.3560 0.4838 13 6 0.5567 -5.6237 0.6495 14 8 1.2133 -6.5461 0.2150 15 6 -0.7362 -5.8951 1.3748 16 16 -1.0331 -7.6837 1.4326 17 6 -2.5604 -7.8040 2.3029 18 6 -3.2031 -6.6539 2.7441 19 6 -4.4003 -6.7517 3.4254 20 6 -4.9600 -7.9927 3.6695 21 6 -4.3239 -9.1402 3.2322 22 6 -3.1290 -9.0498 2.5439 23 17 -2.3348 -10.4901 1.9885 24 6 2.1608 -3.7358 -0.1538 25 1 -0.4850 -0.8357 0.0860 26 1 -0.0835 -1.7161 -1.5945 27 1 0.8051 -2.6872 1.8427 28 1 -0.6172 -2.9282 0.7358 29 1 -0.6722 -5.5041 2.3901 30 1 -1.5571 -5.4077 0.8488 31 1 -2.7671 -5.6843 2.5537 32 1 -4.8998 -5.8580 3.7689 33 1 -5.8962 -8.0659 4.2030 34 1 -4.7640 -10.1075 3.4242 35 1 2.4415 -4.1971 -1.1007 36 1 3.0066 -3.5995 0.5201 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000186829349.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:38:17 Heat of formation + Delta-G solvation = -27.676537 kcal Electronic energy + Delta-G solvation = -22205.791652 eV Core-core repulsion = 18615.410958 eV Total energy + Delta-G solvation = -3590.380694 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 327.048 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -39.83306 -39.34959 -37.72625 -36.64741 -34.41988 -32.48252 -31.81802 -30.97747 -30.47094 -27.90323 -25.66803 -24.81316 -23.25671 -22.93171 -20.60900 -18.88070 -18.33548 -17.77788 -16.85351 -16.52651 -15.92234 -15.66361 -15.40149 -15.02395 -14.73948 -14.30177 -14.04947 -14.01978 -13.90006 -13.70154 -13.21834 -12.63818 -12.51576 -12.13074 -12.05637 -11.81016 -11.76790 -11.63889 -11.23992 -11.19938 -10.99949 -10.66297 -10.27978 -10.20572 -10.06568 -9.78763 -9.44891 -9.12698 -8.92553 -8.56266 -8.06758 -7.54420 -6.77744 -4.57575 0.77837 0.88081 1.13737 1.87549 2.26497 2.83181 3.23805 3.25214 3.25719 3.31270 3.47465 4.25135 4.41508 4.50743 4.62514 4.74679 4.88119 4.92298 4.95804 5.12244 5.16214 5.22387 5.44915 5.55320 5.72744 5.85415 5.89976 6.00141 6.07377 6.17480 6.26406 6.30629 6.40458 6.65721 7.54861 8.00320 8.11681 8.33486 8.39287 8.73321 9.12724 10.53762 Molecular weight = 327.05amu Principal moments of inertia in cm(-1) A = 0.022585 B = 0.002740 C = 0.002503 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1239.452596 B =10217.661986 C =11184.521064 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.038 3.962 3 Si 1.067 2.933 4 H -0.280 1.280 5 H -0.285 1.285 6 H -0.283 1.283 7 C -0.618 4.618 8 H 0.066 0.934 9 C 0.217 3.783 10 O -0.565 6.565 11 C 0.067 3.933 12 N -0.628 5.628 13 C 0.548 3.452 14 O -0.542 6.542 15 C -0.152 4.152 16 S 0.000 6.000 17 C -0.095 4.095 18 C -0.127 4.127 19 C -0.093 4.093 20 C -0.120 4.120 21 C -0.092 4.092 22 C -0.025 4.025 23 Cl -0.055 7.055 24 C 0.126 3.874 25 H 0.267 0.733 26 H 0.375 0.625 27 H 0.090 0.910 28 H 0.066 0.934 29 H 0.114 0.886 30 H 0.115 0.885 31 H 0.132 0.868 32 H 0.132 0.868 33 H 0.133 0.867 34 H 0.136 0.864 35 H 0.074 0.926 36 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.758 -12.055 8.323 17.602 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.168 4.168 3 Si 0.893 3.107 4 H -0.205 1.205 5 H -0.211 1.211 6 H -0.209 1.209 7 C -0.656 4.656 8 H 0.085 0.915 9 C 0.176 3.824 10 O -0.372 6.372 11 C -0.056 4.056 12 N -0.362 5.362 13 C 0.335 3.665 14 O -0.421 6.421 15 C -0.303 4.303 16 S 0.246 5.754 17 C -0.210 4.210 18 C -0.152 4.152 19 C -0.113 4.113 20 C -0.142 4.142 21 C -0.112 4.112 22 C -0.059 4.059 23 Cl -0.025 7.025 24 C 0.005 3.995 25 H 0.079 0.921 26 H 0.225 0.775 27 H 0.108 0.892 28 H 0.084 0.916 29 H 0.132 0.868 30 H 0.133 0.867 31 H 0.150 0.850 32 H 0.150 0.850 33 H 0.151 0.849 34 H 0.154 0.846 35 H 0.093 0.907 36 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -8.394 -12.567 7.317 16.791 hybrid contribution -1.078 -0.210 0.913 1.428 sum -9.472 -12.777 8.230 17.908 Atomic orbital electron populations 1.70967 1.06996 1.30601 1.44718 1.25994 0.96190 1.03074 0.91552 0.83579 0.75184 0.74895 0.77040 1.20526 1.21065 1.20938 1.22219 0.97895 0.91913 1.53537 0.91548 1.20120 0.88282 0.92964 0.80999 1.86263 1.57066 1.56297 1.37613 1.24574 0.99816 0.78656 1.02576 1.50089 1.26046 1.04018 1.56067 1.19029 0.85530 0.82005 0.79986 1.90706 1.57776 1.42572 1.51009 1.23861 1.01598 0.99163 1.05653 1.86490 1.17935 1.04201 1.66741 1.22144 1.00966 0.94851 1.03015 1.21232 0.96730 0.96861 1.00362 1.21188 0.94860 0.98168 0.97040 1.21125 1.00401 0.91774 1.00865 1.21004 0.93197 0.99859 0.97133 1.20368 0.95809 0.86604 1.03087 1.98385 1.79616 1.36433 1.88115 1.23352 0.89276 0.90082 0.96812 0.92108 0.77541 0.89186 0.91570 0.86797 0.86706 0.84992 0.85005 0.84917 0.84579 0.90722 0.89029 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -22.64 12.80 55.43 0.71 -21.93 16 2 C 0.04 0.93 5.26 -17.82 -0.09 0.83 16 3 Si 1.07 22.02 29.93 -169.99 -5.09 16.94 16 4 H -0.28 -5.86 7.11 56.52 0.40 -5.46 16 5 H -0.28 -5.63 7.11 56.52 0.40 -5.23 16 6 H -0.28 -5.75 7.11 56.52 0.40 -5.35 16 7 C -0.62 -15.05 8.56 -34.44 -0.29 -15.34 16 8 H 0.07 1.61 7.85 -52.49 -0.41 1.20 16 9 C 0.22 4.89 1.08 -90.84 -0.10 4.79 16 10 O -0.57 -13.38 13.45 -35.23 -0.47 -13.85 16 11 C 0.07 1.30 7.05 -2.97 -0.02 1.28 16 12 N -0.63 -12.37 3.61 -178.27 -0.64 -13.01 16 13 C 0.55 10.49 8.08 -10.98 -0.09 10.41 16 14 O -0.54 -12.02 16.59 5.56 0.09 -11.93 16 15 C -0.15 -2.24 4.57 36.01 0.16 -2.07 16 16 S 0.00 0.01 19.97 -107.50 -2.15 -2.14 16 17 C -0.10 -1.21 6.11 -39.02 -0.24 -1.45 16 18 C -0.13 -1.39 9.36 -39.37 -0.37 -1.76 16 19 C -0.09 -0.82 10.04 -39.61 -0.40 -1.22 16 20 C -0.12 -0.98 10.04 -39.53 -0.40 -1.37 16 21 C -0.09 -0.85 9.82 -39.58 -0.39 -1.24 16 22 C -0.03 -0.30 6.34 -39.30 -0.25 -0.54 16 23 Cl -0.05 -0.65 27.84 -51.86 -1.44 -2.10 16 24 C 0.13 2.63 8.22 -2.97 -0.02 2.61 16 25 H 0.27 6.49 5.52 -40.82 -0.23 6.27 16 26 H 0.38 8.66 6.95 45.56 0.32 8.98 16 27 H 0.09 1.72 8.09 -51.93 -0.42 1.30 16 28 H 0.07 1.22 7.80 -51.92 -0.41 0.81 16 29 H 0.11 1.44 7.75 -51.93 -0.40 1.04 16 30 H 0.11 1.54 7.75 -51.93 -0.40 1.13 16 31 H 0.13 1.32 5.88 -52.49 -0.31 1.01 16 32 H 0.13 0.86 8.06 -52.49 -0.42 0.44 16 33 H 0.13 0.71 8.06 -52.49 -0.42 0.29 16 34 H 0.14 0.96 8.06 -52.49 -0.42 0.54 16 35 H 0.07 1.59 8.14 -51.93 -0.42 1.16 16 36 H 0.09 1.77 8.09 -51.93 -0.42 1.35 16 LS Contribution 338.05 15.07 5.09 5.09 Total: -1.00 -28.98 338.05 -9.56 -38.54 By element: Atomic # 1 Polarization: 12.64 SS G_CDS: -3.17 Total: 9.48 kcal Atomic # 6 Polarization: -2.59 SS G_CDS: -2.50 Total: -5.09 kcal Atomic # 7 Polarization: -35.01 SS G_CDS: 0.07 Total: -34.94 kcal Atomic # 8 Polarization: -25.40 SS G_CDS: -0.38 Total: -25.78 kcal Atomic # 14 Polarization: 22.02 SS G_CDS: -5.09 Total: 16.94 kcal Atomic # 16 Polarization: 0.01 SS G_CDS: -2.15 Total: -2.14 kcal Atomic # 17 Polarization: -0.65 SS G_CDS: -1.44 Total: -2.10 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -28.98 -9.56 -38.54 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000186829349.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.865 kcal (2) G-P(sol) polarization free energy of solvation -28.981 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.116 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.560 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.542 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.677 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds