Wall clock time and date at job start Tue Mar 31 2020 14:38:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86793 * 119.99820 * 2 1 4 4 H 1.48503 * 109.47305 * 359.97438 * 3 2 1 5 5 H 1.48502 * 109.47166 * 119.99674 * 3 2 1 6 6 H 1.48499 * 109.46987 * 239.99642 * 3 2 1 7 7 C 1.37870 * 119.99939 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00066 * 193.83475 * 7 2 1 9 9 C 1.50700 * 120.00275 * 13.83955 * 7 2 1 10 10 O 1.42897 * 112.94783 * 53.31840 * 9 7 2 11 11 C 1.53951 * 113.73930 * 281.58305 * 9 7 2 12 12 N 1.47585 * 86.11814 * 222.04471 * 11 9 7 13 13 C 1.34771 * 134.49296 * 204.63537 * 12 11 9 14 14 O 1.21279 * 120.00331 * 180.02562 * 13 12 11 15 15 C 1.50707 * 120.00011 * 0.02562 * 13 12 11 16 16 S 1.81401 * 109.47042 * 179.97438 * 15 13 12 17 17 C 1.76194 * 102.99754 * 179.97438 * 16 15 13 18 18 C 1.38942 * 120.08636 * 0.02562 * 17 16 15 19 19 C 1.38096 * 119.93374 * 179.97438 * 18 17 16 20 20 C 1.38307 * 120.10132 * 0.02562 * 19 18 17 21 21 C 1.38297 * 120.16659 * 359.97438 * 20 19 18 22 22 C 1.38195 * 120.06200 * 359.70047 * 21 20 19 23 23 Cl 1.73601 * 120.04383 * 180.29507 * 22 21 20 24 24 C 1.47584 * 91.01048 * 24.64339 * 12 11 9 25 25 H 0.97007 * 119.99483 * 185.87567 * 1 2 3 26 26 H 0.96698 * 114.00098 * 303.04147 * 10 9 7 27 27 H 1.08994 * 113.76900 * 336.35179 * 11 9 7 28 28 H 1.09010 * 113.76488 * 107.74641 * 11 9 7 29 29 H 1.08992 * 109.46728 * 299.99633 * 15 13 12 30 30 H 1.08994 * 109.46926 * 59.99489 * 15 13 12 31 31 H 1.07997 * 120.02982 * 0.02562 * 18 17 16 32 32 H 1.07996 * 119.95180 * 179.97438 * 19 18 17 33 33 H 1.07998 * 119.91967 * 179.97438 * 20 19 18 34 34 H 1.07994 * 119.96936 * 180.02562 * 21 20 19 35 35 H 1.09003 * 113.76727 * 221.05145 * 24 12 11 36 36 H 1.09000 * 113.86995 * 89.67487 * 24 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 1.2841 2.7464 -0.0006 5 1 3.1028 1.6964 1.2126 6 1 3.1029 1.6963 -1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0610 -1.2075 0.2242 9 6 1.2839 -2.4803 -0.3111 10 8 0.5652 -2.4315 -1.5452 11 6 0.4600 -3.0303 0.8674 12 7 0.9831 -4.3560 0.4838 13 6 0.5567 -5.6237 0.6495 14 8 1.2133 -6.5461 0.2150 15 6 -0.7362 -5.8951 1.3748 16 16 -1.0331 -7.6837 1.4326 17 6 -2.5604 -7.8040 2.3029 18 6 -3.2031 -6.6539 2.7441 19 6 -4.4003 -6.7517 3.4254 20 6 -4.9600 -7.9927 3.6695 21 6 -4.3239 -9.1402 3.2322 22 6 -3.1290 -9.0498 2.5439 23 17 -2.3348 -10.4901 1.9885 24 6 2.1608 -3.7358 -0.1538 25 1 -0.4850 -0.8357 0.0860 26 1 -0.0835 -1.7161 -1.5945 27 1 0.8051 -2.6872 1.8427 28 1 -0.6172 -2.9282 0.7358 29 1 -0.6722 -5.5041 2.3901 30 1 -1.5571 -5.4077 0.8488 31 1 -2.7671 -5.6843 2.5537 32 1 -4.8998 -5.8580 3.7689 33 1 -5.8962 -8.0659 4.2030 34 1 -4.7640 -10.1075 3.4242 35 1 2.4415 -4.1971 -1.1007 36 1 3.0066 -3.5995 0.5201 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000186829349.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:38:16 Heat of formation + Delta-G solvation = -45.152387 kcal Electronic energy + Delta-G solvation = -22206.549462 eV Core-core repulsion = 18615.410958 eV Total energy + Delta-G solvation = -3591.138504 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 327.048 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.45452 -40.10744 -39.37394 -37.50652 -36.18544 -34.34797 -32.76356 -31.82293 -31.61187 -29.45146 -27.30477 -26.56317 -24.01583 -23.74115 -22.27035 -20.38685 -19.91349 -18.99295 -18.25298 -17.55335 -17.18018 -17.03557 -16.67894 -16.41404 -15.85969 -15.78262 -15.62206 -15.09150 -14.86197 -14.74699 -14.49365 -14.29901 -13.99657 -13.66859 -13.43491 -12.99533 -12.84060 -12.65077 -12.60456 -12.54427 -12.40320 -12.05398 -11.90862 -11.38143 -11.24349 -11.16580 -10.89410 -10.74023 -10.28631 -9.89957 -9.74451 -8.67979 -8.59760 -6.48720 -0.00045 0.05224 0.13860 0.96806 1.29989 1.33673 1.61623 1.65183 1.75431 1.86650 2.52346 2.55457 2.88782 3.12031 3.47989 3.66712 3.75561 3.86534 3.98006 3.99954 4.25173 4.27953 4.30261 4.37946 4.39691 4.55967 4.60315 4.69800 4.74568 4.95106 4.99961 5.19474 5.37223 5.72866 5.73720 6.09076 6.45892 6.57127 6.83468 6.91845 7.26405 8.65585 Molecular weight = 327.05amu Principal moments of inertia in cm(-1) A = 0.022585 B = 0.002740 C = 0.002503 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1239.452596 B =10217.661986 C =11184.521064 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.914 5.914 2 C 0.002 3.998 3 Si 1.108 2.892 4 H -0.284 1.284 5 H -0.270 1.270 6 H -0.280 1.280 7 C -0.633 4.633 8 H 0.061 0.939 9 C 0.199 3.801 10 O -0.577 6.577 11 C 0.084 3.916 12 N -0.628 5.628 13 C 0.542 3.458 14 O -0.576 6.576 15 C -0.134 4.134 16 S -0.053 6.053 17 C -0.109 4.109 18 C -0.137 4.137 19 C -0.092 4.092 20 C -0.108 4.108 21 C -0.094 4.094 22 C -0.042 4.042 23 Cl -0.067 7.067 24 C 0.123 3.877 25 H 0.266 0.734 26 H 0.375 0.625 27 H 0.098 0.902 28 H 0.079 0.921 29 H 0.137 0.863 30 H 0.130 0.870 31 H 0.138 0.862 32 H 0.160 0.840 33 H 0.169 0.831 34 H 0.158 0.842 35 H 0.062 0.938 36 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.658 -11.569 10.087 19.274 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.551 5.551 2 C -0.200 4.200 3 Si 0.930 3.070 4 H -0.209 1.209 5 H -0.195 1.195 6 H -0.206 1.206 7 C -0.670 4.670 8 H 0.079 0.921 9 C 0.158 3.842 10 O -0.384 6.384 11 C -0.038 4.038 12 N -0.362 5.362 13 C 0.331 3.669 14 O -0.458 6.458 15 C -0.284 4.284 16 S 0.191 5.809 17 C -0.223 4.223 18 C -0.161 4.161 19 C -0.111 4.111 20 C -0.128 4.128 21 C -0.114 4.114 22 C -0.075 4.075 23 Cl -0.038 7.038 24 C 0.001 3.999 25 H 0.077 0.923 26 H 0.224 0.776 27 H 0.116 0.884 28 H 0.097 0.903 29 H 0.155 0.845 30 H 0.148 0.852 31 H 0.156 0.844 32 H 0.178 0.822 33 H 0.187 0.813 34 H 0.176 0.824 35 H 0.081 0.919 36 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -10.315 -12.097 9.101 18.318 hybrid contribution -0.578 -0.414 0.389 0.810 sum -10.893 -12.510 9.490 19.111 Atomic orbital electron populations 1.71022 1.07490 1.30716 1.45853 1.27007 0.96410 1.05621 0.90977 0.83023 0.74377 0.71891 0.77687 1.20945 1.19499 1.20572 1.22438 0.97892 0.93033 1.53677 0.92051 1.20317 0.89358 0.92991 0.81530 1.86250 1.57195 1.56276 1.38696 1.24343 1.00134 0.77872 1.01465 1.50066 1.25634 1.04464 1.56020 1.19714 0.86590 0.81097 0.79483 1.90688 1.59197 1.43458 1.52430 1.23694 0.99221 0.99145 1.06346 1.86621 1.20931 1.04750 1.68587 1.22039 0.99950 0.96015 1.04336 1.21446 0.97553 0.96468 1.00585 1.21580 0.93949 0.99732 0.95887 1.21597 1.01070 0.90855 0.99311 1.21353 0.92186 1.01592 0.96228 1.20639 0.96808 0.85972 1.04085 1.98376 1.80061 1.37016 1.88395 1.23343 0.90051 0.89620 0.96880 0.92260 0.77588 0.88447 0.90256 0.84460 0.85204 0.84409 0.82196 0.81341 0.82433 0.91921 0.87763 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -45.48 12.80 21.45 0.27 -45.21 16 2 C 0.00 0.10 5.26 84.65 0.45 0.54 16 3 Si 1.11 43.59 29.93 68.60 2.05 45.65 16 4 H -0.28 -11.29 7.11 99.48 0.71 -10.59 16 5 H -0.27 -9.90 7.11 99.48 0.71 -9.20 16 6 H -0.28 -10.77 7.11 99.48 0.71 -10.06 16 7 C -0.63 -30.56 8.56 25.60 0.22 -30.34 16 8 H 0.06 2.95 7.85 -2.91 -0.02 2.93 16 9 C 0.20 8.89 1.08 -10.88 -0.01 8.88 16 10 O -0.58 -27.42 13.45 -148.98 -2.00 -29.43 16 11 C 0.08 3.20 7.05 86.48 0.61 3.81 16 12 N -0.63 -24.43 3.61 -840.13 -3.03 -27.46 16 13 C 0.54 20.68 8.08 87.66 0.71 21.38 16 14 O -0.58 -26.05 16.59 -3.03 -0.05 -26.10 16 15 C -0.13 -3.81 4.57 71.24 0.33 -3.49 16 16 S -0.05 -1.61 19.97 -56.49 -1.13 -2.74 16 17 C -0.11 -2.67 6.11 22.63 0.14 -2.53 16 18 C -0.14 -2.67 9.36 22.40 0.21 -2.46 16 19 C -0.09 -1.29 10.04 22.25 0.22 -1.07 16 20 C -0.11 -1.31 10.04 22.30 0.22 -1.09 16 21 C -0.09 -1.48 9.82 22.27 0.22 -1.27 16 22 C -0.04 -0.94 6.34 22.45 0.14 -0.80 16 23 Cl -0.07 -1.61 27.84 -2.72 -0.08 -1.69 16 24 C 0.12 5.15 8.22 86.48 0.71 5.86 16 25 H 0.27 12.76 5.52 -92.70 -0.51 12.25 16 26 H 0.38 17.41 6.95 -74.06 -0.52 16.90 16 27 H 0.10 3.56 8.09 -2.39 -0.02 3.54 16 28 H 0.08 2.79 7.80 -2.38 -0.02 2.77 16 29 H 0.14 3.22 7.75 -2.39 -0.02 3.20 16 30 H 0.13 3.28 7.75 -2.39 -0.02 3.27 16 31 H 0.14 2.43 5.88 -2.91 -0.02 2.41 16 32 H 0.16 1.34 8.06 -2.91 -0.02 1.32 16 33 H 0.17 0.87 8.06 -2.91 -0.02 0.85 16 34 H 0.16 1.75 8.06 -2.91 -0.02 1.72 16 35 H 0.06 2.72 8.14 -2.39 -0.02 2.70 16 36 H 0.10 4.02 8.09 -2.39 -0.02 4.00 16 Total: -1.00 -62.59 338.05 1.07 -61.52 By element: Atomic # 1 Polarization: 27.15 SS G_CDS: 0.87 Total: 28.01 kcal Atomic # 6 Polarization: -6.72 SS G_CDS: 4.16 Total: -2.55 kcal Atomic # 7 Polarization: -69.91 SS G_CDS: -2.76 Total: -72.67 kcal Atomic # 8 Polarization: -53.47 SS G_CDS: -2.05 Total: -55.53 kcal Atomic # 14 Polarization: 43.59 SS G_CDS: 2.05 Total: 45.65 kcal Atomic # 16 Polarization: -1.61 SS G_CDS: -1.13 Total: -2.74 kcal Atomic # 17 Polarization: -1.61 SS G_CDS: -0.08 Total: -1.69 kcal Total: -62.59 1.07 -61.52 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000186829349.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.363 kcal (2) G-P(sol) polarization free energy of solvation -62.588 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.224 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.072 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.516 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.152 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds