Wall clock time and date at job start Tue Mar 31 2020 15:01:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81399 * 1 3 3 C 1.76204 * 102.99737 * 2 1 4 4 C 1.39100 * 119.99194 * 0.02562 * 3 2 1 5 5 C 1.38142 * 120.24024 * 180.02562 * 4 3 2 6 6 C 1.38201 * 120.21743 * 359.97438 * 5 4 3 7 7 Cl 1.73594 * 120.00772 * 179.97438 * 6 5 4 8 8 C 1.39701 * 119.97546 * 0.27316 * 6 5 4 9 9 C 1.47792 * 120.11485 * 179.70372 * 8 6 5 10 10 O 1.21562 * 119.99975 * 24.63552 * 9 8 6 11 11 N 1.34776 * 119.99916 * 204.64113 * 9 8 6 12 12 C 1.47065 * 136.05942 * 4.85002 * 11 9 8 13 13 C 1.53759 * 87.89000 * 152.96560 * 12 11 9 14 14 O 1.42899 * 114.39340 * 272.68025 * 13 12 11 15 15 C 1.50696 * 114.26453 * 139.78748 * 13 12 11 16 16 H 1.07994 * 120.00444 * 266.47359 * 15 13 12 17 17 C 1.37879 * 119.99500 * 86.48283 * 15 13 12 18 18 N 1.31507 * 120.00244 * 359.97438 * 17 15 13 19 19 Si 1.86806 * 119.99868 * 179.97438 * 17 15 13 20 20 H 1.48494 * 109.47378 * 89.99689 * 19 17 15 21 21 H 1.48505 * 109.46746 * 209.99930 * 19 17 15 22 22 H 1.48499 * 109.46801 * 329.99675 * 19 17 15 23 23 C 1.47067 * 136.05467 * 185.22701 * 11 9 8 24 24 C 1.38643 * 119.99171 * 180.02562 * 3 2 1 25 25 H 1.08997 * 109.46889 * 179.97438 * 1 2 3 26 26 H 1.09006 * 109.47092 * 299.99469 * 1 2 3 27 27 H 1.08993 * 109.47495 * 59.99663 * 1 2 3 28 28 H 1.07996 * 119.88143 * 0.02562 * 4 3 2 29 29 H 1.07995 * 119.89026 * 179.97438 * 5 4 3 30 30 H 1.09003 * 113.46857 * 267.70155 * 12 11 9 31 31 H 1.09000 * 113.46663 * 38.13609 * 12 11 9 32 32 H 0.96697 * 113.99903 * 273.57810 * 14 13 12 33 33 H 0.97004 * 120.00091 * 180.02562 * 18 17 15 34 34 H 1.09002 * 113.47052 * 321.86151 * 23 11 9 35 35 H 1.09002 * 113.46826 * 92.24242 * 23 11 9 36 36 H 1.07998 * 120.10759 * 359.96652 * 24 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2103 1.7169 0.0000 4 6 1.1928 2.6654 0.0005 5 6 1.4976 4.0127 0.0000 6 6 2.8159 4.4276 -0.0005 7 17 3.1928 6.1221 -0.0019 8 6 3.8450 3.4828 -0.0063 9 6 5.2558 3.9230 -0.0135 10 8 5.5532 5.0174 0.4242 11 7 6.2125 3.1112 -0.5055 12 6 6.2490 1.8043 -1.1790 13 6 7.5636 2.2467 -1.8425 14 8 7.3945 2.9654 -3.0660 15 6 8.6095 1.1650 -1.9265 16 1 9.3538 1.0720 -1.1496 17 6 8.6162 0.2942 -2.9955 18 7 7.7096 0.4072 -3.9414 19 14 9.9131 -1.0463 -3.1001 20 1 9.4146 -2.2711 -2.4246 21 1 10.1986 -1.3485 -4.5258 22 1 11.1570 -0.5845 -2.4333 23 6 7.6799 3.1393 -0.5991 24 6 3.5362 2.1221 -0.0005 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8901 27 1 -0.3634 0.5138 -0.8899 28 1 0.1607 2.3473 0.0014 29 1 0.7032 4.7443 0.0000 30 1 6.3696 0.9657 -0.4932 31 1 5.4323 1.6573 -1.8858 32 1 7.3216 2.4002 -3.8472 33 1 7.7141 -0.2057 -4.6933 34 1 8.0824 4.1297 -0.8119 35 1 8.1778 2.6536 0.2401 36 1 4.3273 1.3870 -0.0004 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000191953303.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:01:42 Heat of formation + Delta-G solvation = -14.547541 kcal Electronic energy + Delta-G solvation = -23078.561293 eV Core-core repulsion = 19488.749915 eV Total energy + Delta-G solvation = -3589.811378 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 327.048 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.10970 -38.78048 -37.15510 -36.25455 -34.05417 -32.20443 -31.81772 -30.98771 -29.29005 -28.46184 -25.56505 -25.20841 -23.48507 -22.82948 -20.43006 -19.04066 -17.66942 -17.13782 -16.73078 -16.41865 -15.62810 -15.36061 -14.99820 -14.66948 -14.59847 -14.21176 -14.11679 -13.92415 -13.48174 -13.09941 -12.96179 -12.70811 -12.54792 -12.06430 -11.92077 -11.85394 -11.68728 -11.55913 -11.07553 -11.03628 -10.82535 -10.49971 -10.43567 -10.27901 -9.60239 -9.53597 -9.19243 -9.18174 -8.79225 -8.40214 -7.86234 -7.52942 -6.41098 -4.51793 0.67924 0.98790 1.27246 2.14661 2.27282 2.96304 3.14181 3.22537 3.25448 3.42304 3.76944 4.17399 4.51431 4.61988 4.75517 4.76540 4.80574 4.93393 5.12769 5.24763 5.34893 5.50437 5.64361 5.76656 5.82060 5.95099 6.00403 6.17135 6.38761 6.41254 6.43532 6.62152 6.66363 7.08475 7.61945 7.78928 8.41538 8.52122 8.68287 9.19787 9.48614 10.65580 Molecular weight = 327.05amu Principal moments of inertia in cm(-1) A = 0.011594 B = 0.004461 C = 0.003417 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2414.445761 B = 6274.409996 C = 8193.421529 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 S -0.098 6.098 3 C -0.093 4.093 4 C -0.108 4.108 5 C -0.102 4.102 6 C 0.004 3.996 7 Cl -0.037 7.037 8 C -0.090 4.090 9 C 0.573 3.427 10 O -0.535 6.535 11 N -0.627 5.627 12 C 0.066 3.934 13 C 0.243 3.757 14 O -0.570 6.570 15 C -0.535 4.535 16 H 0.073 0.927 17 C 0.073 3.927 18 N -0.897 5.897 19 Si 0.908 3.092 20 H -0.277 1.277 21 H -0.283 1.283 22 H -0.270 1.270 23 C 0.109 3.891 24 C -0.053 4.053 25 H 0.109 0.891 26 H 0.084 0.916 27 H 0.085 0.915 28 H 0.134 0.866 29 H 0.141 0.859 30 H 0.083 0.917 31 H 0.067 0.933 32 H 0.394 0.606 33 H 0.274 0.726 34 H 0.069 0.931 35 H 0.088 0.912 36 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.087 -0.837 6.353 16.391 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.318 4.318 2 S 0.144 5.856 3 C -0.206 4.206 4 C -0.132 4.132 5 C -0.123 4.123 6 C -0.026 4.026 7 Cl -0.007 7.007 8 C -0.095 4.095 9 C 0.361 3.639 10 O -0.414 6.414 11 N -0.360 5.360 12 C -0.057 4.057 13 C 0.201 3.799 14 O -0.383 6.383 15 C -0.573 4.573 16 H 0.091 0.909 17 C -0.130 4.130 18 N -0.537 5.537 19 Si 0.735 3.265 20 H -0.202 1.202 21 H -0.209 1.209 22 H -0.195 1.195 23 C -0.013 4.013 24 C -0.077 4.077 25 H 0.128 0.872 26 H 0.103 0.897 27 H 0.104 0.896 28 H 0.152 0.848 29 H 0.159 0.841 30 H 0.101 0.899 31 H 0.085 0.915 32 H 0.250 0.750 33 H 0.085 0.915 34 H 0.087 0.913 35 H 0.106 0.894 36 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -14.436 -0.614 6.866 15.998 hybrid contribution -0.441 -0.104 -0.480 0.660 sum -14.878 -0.717 6.387 16.207 Atomic orbital electron populations 1.23717 0.95197 1.07261 1.05648 1.85792 1.05781 1.01725 1.92304 1.21723 0.96245 0.97396 1.05213 1.21195 0.98538 0.92212 1.01244 1.20869 0.94425 0.95940 1.01045 1.20973 0.93349 0.86511 1.01793 1.98403 1.94816 1.11267 1.96225 1.19834 0.93894 0.92569 1.03248 1.17429 0.83650 0.84291 0.78492 1.90789 1.82301 1.20227 1.48066 1.49604 1.08142 1.21591 1.56632 1.24394 1.02670 0.83910 0.94767 1.19556 0.89977 0.88075 0.82338 1.86056 1.95405 1.38834 1.17966 1.21422 1.14395 1.13055 1.08393 0.90857 1.25073 0.95580 0.97472 0.94826 1.69263 1.34303 1.38771 1.11391 0.86319 0.81418 0.81153 0.77589 1.20243 1.20875 1.19488 1.23364 0.78492 1.01051 0.98372 1.21175 0.95221 0.94708 0.96641 0.87236 0.89719 0.89604 0.84787 0.84150 0.89919 0.91460 0.74953 0.91527 0.91276 0.89436 0.83505 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.03 9.15 101.05 0.92 -0.11 16 2 S -0.10 -1.13 22.56 -107.50 -2.43 -3.55 16 3 C -0.09 -1.24 6.10 -39.11 -0.24 -1.48 16 4 C -0.11 -1.21 9.36 -39.30 -0.37 -1.58 16 5 C -0.10 -1.25 9.81 -39.63 -0.39 -1.64 16 6 C 0.00 0.07 6.34 -39.05 -0.25 -0.18 16 7 Cl -0.04 -0.60 26.33 -51.86 -1.37 -1.97 16 8 C -0.09 -1.60 5.83 -104.96 -0.61 -2.21 16 9 C 0.57 12.09 7.72 -12.35 -0.10 12.00 16 10 O -0.53 -12.36 15.30 5.31 0.08 -12.28 16 11 N -0.63 -13.38 3.64 -186.17 -0.68 -14.06 16 12 C 0.07 1.39 5.55 -8.37 -0.05 1.34 16 13 C 0.24 5.77 1.58 -91.12 -0.14 5.63 16 14 O -0.57 -14.78 13.55 -35.23 -0.48 -15.25 16 15 C -0.53 -13.15 8.70 -34.44 -0.30 -13.45 16 16 H 0.07 1.74 7.81 -52.49 -0.41 1.33 16 17 C 0.07 1.79 5.39 -17.82 -0.10 1.70 16 18 N -0.90 -22.49 11.01 55.43 0.61 -21.88 16 19 Si 0.91 19.14 29.54 -169.99 -5.02 14.12 16 20 H -0.28 -5.78 7.11 56.52 0.40 -5.37 16 21 H -0.28 -5.99 7.11 56.52 0.40 -5.59 16 22 H -0.27 -5.69 7.11 56.52 0.40 -5.29 16 23 C 0.11 2.37 8.02 -8.50 -0.07 2.30 16 24 C -0.05 -0.85 8.58 -38.95 -0.33 -1.19 16 25 H 0.11 0.59 8.14 -51.93 -0.42 0.17 16 26 H 0.08 0.49 7.74 -51.92 -0.40 0.09 16 27 H 0.09 0.53 7.74 -51.93 -0.40 0.13 16 28 H 0.13 1.06 5.85 -52.49 -0.31 0.76 16 29 H 0.14 1.31 8.06 -52.49 -0.42 0.88 16 30 H 0.08 1.64 7.89 -51.93 -0.41 1.23 16 31 H 0.07 1.46 7.76 -51.93 -0.40 1.06 16 32 H 0.39 10.30 6.33 45.56 0.29 10.59 16 33 H 0.27 6.54 8.31 -40.82 -0.34 6.20 16 34 H 0.07 1.54 8.14 -51.93 -0.42 1.12 16 35 H 0.09 1.71 8.10 -51.93 -0.42 1.29 16 36 H 0.15 2.40 5.71 -52.49 -0.30 2.10 16 LS Contribution 332.98 15.07 5.02 5.02 Total: -1.00 -28.59 332.98 -9.44 -38.03 By element: Atomic # 1 Polarization: 13.86 SS G_CDS: -3.17 Total: 10.69 kcal Atomic # 6 Polarization: 3.14 SS G_CDS: -2.02 Total: 1.12 kcal Atomic # 7 Polarization: -35.87 SS G_CDS: -0.07 Total: -35.94 kcal Atomic # 8 Polarization: -27.13 SS G_CDS: -0.40 Total: -27.53 kcal Atomic # 14 Polarization: 19.14 SS G_CDS: -5.02 Total: 14.12 kcal Atomic # 16 Polarization: -1.13 SS G_CDS: -2.43 Total: -3.55 kcal Atomic # 17 Polarization: -0.60 SS G_CDS: -1.37 Total: -1.97 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -28.59 -9.44 -38.03 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000191953303.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.483 kcal (2) G-P(sol) polarization free energy of solvation -28.589 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.106 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.441 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.031 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.548 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds