Wall clock time and date at job start Tue Mar 31 2020 15:01:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81399 * 1 3 3 C 1.76204 * 102.99737 * 2 1 4 4 C 1.39100 * 119.99194 * 0.02562 * 3 2 1 5 5 C 1.38142 * 120.24024 * 180.02562 * 4 3 2 6 6 C 1.38201 * 120.21743 * 359.97438 * 5 4 3 7 7 Cl 1.73594 * 120.00772 * 179.97438 * 6 5 4 8 8 C 1.39701 * 119.97546 * 0.27316 * 6 5 4 9 9 C 1.47792 * 120.11485 * 179.70372 * 8 6 5 10 10 O 1.21562 * 119.99975 * 24.63552 * 9 8 6 11 11 N 1.34776 * 119.99916 * 204.64113 * 9 8 6 12 12 C 1.47065 * 136.05942 * 4.85002 * 11 9 8 13 13 C 1.53759 * 87.89000 * 152.96560 * 12 11 9 14 14 O 1.42899 * 114.39340 * 272.68025 * 13 12 11 15 15 C 1.50696 * 114.26453 * 139.78748 * 13 12 11 16 16 H 1.07994 * 120.00444 * 266.47359 * 15 13 12 17 17 C 1.37879 * 119.99500 * 86.48283 * 15 13 12 18 18 N 1.31507 * 120.00244 * 359.97438 * 17 15 13 19 19 Si 1.86806 * 119.99868 * 179.97438 * 17 15 13 20 20 H 1.48494 * 109.47378 * 89.99689 * 19 17 15 21 21 H 1.48505 * 109.46746 * 209.99930 * 19 17 15 22 22 H 1.48499 * 109.46801 * 329.99675 * 19 17 15 23 23 C 1.47067 * 136.05467 * 185.22701 * 11 9 8 24 24 C 1.38643 * 119.99171 * 180.02562 * 3 2 1 25 25 H 1.08997 * 109.46889 * 179.97438 * 1 2 3 26 26 H 1.09006 * 109.47092 * 299.99469 * 1 2 3 27 27 H 1.08993 * 109.47495 * 59.99663 * 1 2 3 28 28 H 1.07996 * 119.88143 * 0.02562 * 4 3 2 29 29 H 1.07995 * 119.89026 * 179.97438 * 5 4 3 30 30 H 1.09003 * 113.46857 * 267.70155 * 12 11 9 31 31 H 1.09000 * 113.46663 * 38.13609 * 12 11 9 32 32 H 0.96697 * 113.99903 * 273.57810 * 14 13 12 33 33 H 0.97004 * 120.00091 * 180.02562 * 18 17 15 34 34 H 1.09002 * 113.47052 * 321.86151 * 23 11 9 35 35 H 1.09002 * 113.46826 * 92.24242 * 23 11 9 36 36 H 1.07998 * 120.10759 * 359.96652 * 24 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2103 1.7169 0.0000 4 6 1.1928 2.6654 0.0005 5 6 1.4976 4.0127 0.0000 6 6 2.8159 4.4276 -0.0005 7 17 3.1928 6.1221 -0.0019 8 6 3.8450 3.4828 -0.0063 9 6 5.2558 3.9230 -0.0135 10 8 5.5532 5.0174 0.4242 11 7 6.2125 3.1112 -0.5055 12 6 6.2490 1.8043 -1.1790 13 6 7.5636 2.2467 -1.8425 14 8 7.3945 2.9654 -3.0660 15 6 8.6095 1.1650 -1.9265 16 1 9.3538 1.0720 -1.1496 17 6 8.6162 0.2942 -2.9955 18 7 7.7096 0.4072 -3.9414 19 14 9.9131 -1.0463 -3.1001 20 1 9.4146 -2.2711 -2.4246 21 1 10.1986 -1.3485 -4.5258 22 1 11.1570 -0.5845 -2.4333 23 6 7.6799 3.1393 -0.5991 24 6 3.5362 2.1221 -0.0005 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8901 27 1 -0.3634 0.5138 -0.8899 28 1 0.1607 2.3473 0.0014 29 1 0.7032 4.7443 0.0000 30 1 6.3696 0.9657 -0.4932 31 1 5.4323 1.6573 -1.8858 32 1 7.3216 2.4002 -3.8472 33 1 7.7141 -0.2057 -4.6933 34 1 8.0824 4.1297 -0.8119 35 1 8.1778 2.6536 0.2401 36 1 4.3273 1.3870 -0.0004 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000191953303.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:01:41 Heat of formation + Delta-G solvation = -32.636698 kcal Electronic energy + Delta-G solvation = -23079.345698 eV Core-core repulsion = 19488.749915 eV Total energy + Delta-G solvation = -3590.595783 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 327.048 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.63466 -40.16861 -38.77969 -37.46320 -35.94138 -34.13247 -33.01752 -32.05551 -30.41179 -29.64868 -27.33379 -26.93790 -24.74449 -23.95155 -22.05251 -20.58572 -19.43953 -18.60127 -17.93750 -17.71697 -17.16898 -16.84807 -16.58483 -16.17808 -15.92140 -15.49963 -15.21667 -15.02762 -14.80761 -14.44291 -14.26442 -14.07432 -13.76304 -13.58734 -13.42385 -13.10878 -12.97873 -12.84431 -12.76138 -12.71561 -12.23073 -12.19282 -12.13900 -11.32986 -11.24297 -10.90033 -10.66392 -10.60420 -10.33877 -10.23469 -9.60475 -8.45898 -8.27363 -6.44896 -0.47912 -0.10023 0.41335 1.06716 1.43980 1.47935 1.51067 1.60130 1.63157 1.83788 2.40911 2.44216 2.94144 3.24366 3.51182 3.73162 3.85345 4.01374 4.10834 4.17228 4.32054 4.32401 4.39906 4.54131 4.59996 4.69147 4.69899 4.81086 4.86366 4.87347 4.92257 5.02542 5.20948 5.39546 5.72621 5.89563 6.61321 6.75063 7.02796 7.29108 7.47355 8.79130 Molecular weight = 327.05amu Principal moments of inertia in cm(-1) A = 0.011594 B = 0.004461 C = 0.003417 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2414.445761 B = 6274.409996 C = 8193.421529 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 S -0.136 6.136 3 C -0.092 4.092 4 C -0.089 4.089 5 C -0.089 4.089 6 C -0.013 4.013 7 Cl -0.052 7.052 8 C -0.119 4.119 9 C 0.566 3.434 10 O -0.564 6.564 11 N -0.631 5.631 12 C 0.087 3.913 13 C 0.221 3.779 14 O -0.586 6.586 15 C -0.552 4.552 16 H 0.077 0.923 17 C 0.034 3.966 18 N -0.918 5.918 19 Si 0.971 3.029 20 H -0.270 1.270 21 H -0.284 1.284 22 H -0.269 1.269 23 C 0.110 3.890 24 C -0.067 4.067 25 H 0.128 0.872 26 H 0.103 0.897 27 H 0.100 0.900 28 H 0.179 0.821 29 H 0.177 0.823 30 H 0.096 0.904 31 H 0.057 0.943 32 H 0.389 0.611 33 H 0.277 0.723 34 H 0.055 0.945 35 H 0.109 0.891 36 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.680 -2.331 6.893 19.118 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.307 4.307 2 S 0.106 5.894 3 C -0.205 4.205 4 C -0.113 4.113 5 C -0.109 4.109 6 C -0.044 4.044 7 Cl -0.023 7.023 8 C -0.124 4.124 9 C 0.357 3.643 10 O -0.445 6.445 11 N -0.364 5.364 12 C -0.036 4.036 13 C 0.180 3.820 14 O -0.399 6.399 15 C -0.590 4.590 16 H 0.095 0.905 17 C -0.167 4.167 18 N -0.558 5.558 19 Si 0.796 3.204 20 H -0.195 1.195 21 H -0.209 1.209 22 H -0.194 1.194 23 C -0.013 4.013 24 C -0.091 4.091 25 H 0.146 0.854 26 H 0.122 0.878 27 H 0.119 0.881 28 H 0.196 0.804 29 H 0.194 0.806 30 H 0.114 0.886 31 H 0.076 0.924 32 H 0.245 0.755 33 H 0.087 0.913 34 H 0.074 0.926 35 H 0.127 0.873 36 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -17.039 -2.119 7.417 18.704 hybrid contribution 0.234 0.311 -0.644 0.753 sum -16.806 -1.807 6.773 18.209 Atomic orbital electron populations 1.23897 0.90467 1.09064 1.07263 1.86010 1.10972 1.00483 1.91895 1.21909 0.95569 0.98981 1.03998 1.21714 1.00075 0.91194 0.98278 1.21288 0.93492 0.97250 0.98863 1.21208 0.94466 0.85486 1.03195 1.98391 1.95085 1.12375 1.96400 1.19641 0.92164 0.93968 1.06661 1.18055 0.84992 0.83730 0.77534 1.90750 1.83106 1.21322 1.49319 1.49639 1.08009 1.21711 1.57011 1.24124 1.00805 0.84258 0.94434 1.19854 0.91412 0.88720 0.82043 1.86040 1.95635 1.39543 1.18688 1.21649 1.14909 1.13492 1.08972 0.90476 1.25775 0.97221 0.99284 0.94416 1.69330 1.35378 1.39411 1.11730 0.85352 0.79027 0.78715 0.77346 1.19534 1.20913 1.19352 1.23381 0.79366 1.00173 0.98338 1.21077 0.96522 0.93611 0.97915 0.85399 0.87798 0.88150 0.80358 0.80595 0.88594 0.92432 0.75494 0.91310 0.92615 0.87326 0.84831 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.27 9.15 113.37 1.04 -0.23 16 2 S -0.14 -2.81 22.56 -56.49 -1.27 -4.09 16 3 C -0.09 -2.26 6.10 22.57 0.14 -2.12 16 4 C -0.09 -1.65 9.36 22.45 0.21 -1.44 16 5 C -0.09 -1.90 9.81 22.24 0.22 -1.68 16 6 C -0.01 -0.40 6.34 22.61 0.14 -0.26 16 7 Cl -0.05 -1.71 26.33 -2.72 -0.07 -1.78 16 8 C -0.12 -4.30 5.83 -20.09 -0.12 -4.41 16 9 C 0.57 24.73 7.72 86.77 0.67 25.40 16 10 O -0.56 -27.04 15.30 -3.91 -0.06 -27.10 16 11 N -0.63 -27.84 3.64 -861.68 -3.14 -30.98 16 12 C 0.09 3.77 5.55 83.27 0.46 4.23 16 13 C 0.22 10.79 1.58 -11.12 -0.02 10.77 16 14 O -0.59 -31.51 13.55 -148.98 -2.02 -33.53 16 15 C -0.55 -27.42 8.70 25.60 0.22 -27.19 16 16 H 0.08 3.67 7.81 -2.91 -0.02 3.65 16 17 C 0.03 1.64 5.39 84.66 0.46 2.10 16 18 N -0.92 -46.44 11.01 21.45 0.24 -46.20 16 19 Si 0.97 38.99 29.54 68.60 2.03 41.02 16 20 H -0.27 -10.50 7.11 99.48 0.71 -9.80 16 21 H -0.28 -11.33 7.11 99.48 0.71 -10.62 16 22 H -0.27 -10.67 7.11 99.48 0.71 -9.96 16 23 C 0.11 4.90 8.02 83.18 0.67 5.57 16 24 C -0.07 -2.13 8.58 22.68 0.19 -1.94 16 25 H 0.13 0.79 8.14 -2.39 -0.02 0.77 16 26 H 0.10 0.62 7.74 -2.39 -0.02 0.60 16 27 H 0.10 0.70 7.74 -2.39 -0.02 0.68 16 28 H 0.18 1.72 5.85 -2.91 -0.02 1.71 16 29 H 0.18 2.48 8.06 -2.91 -0.02 2.46 16 30 H 0.10 3.87 7.89 -2.39 -0.02 3.85 16 31 H 0.06 2.59 7.76 -2.39 -0.02 2.57 16 32 H 0.39 21.12 6.33 -74.06 -0.47 20.65 16 33 H 0.28 13.24 8.31 -92.71 -0.77 12.47 16 34 H 0.06 2.59 8.14 -2.39 -0.02 2.57 16 35 H 0.11 4.31 8.10 -2.39 -0.02 4.29 16 36 H 0.13 4.49 5.71 -2.91 -0.02 4.48 16 Total: -1.00 -64.15 332.98 0.65 -63.49 By element: Atomic # 1 Polarization: 29.69 SS G_CDS: 0.67 Total: 30.36 kcal Atomic # 6 Polarization: 4.51 SS G_CDS: 4.29 Total: 8.80 kcal Atomic # 7 Polarization: -74.28 SS G_CDS: -2.90 Total: -77.18 kcal Atomic # 8 Polarization: -58.55 SS G_CDS: -2.08 Total: -60.63 kcal Atomic # 14 Polarization: 38.99 SS G_CDS: 2.03 Total: 41.02 kcal Atomic # 16 Polarization: -2.81 SS G_CDS: -1.27 Total: -4.09 kcal Atomic # 17 Polarization: -1.71 SS G_CDS: -0.07 Total: -1.78 kcal Total: -64.15 0.65 -63.49 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000191953303.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.857 kcal (2) G-P(sol) polarization free energy of solvation -64.148 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.291 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.654 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.494 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.637 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds