Wall clock time and date at job start Tue Mar 31 2020 14:42:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86803 * 119.99930 * 2 1 4 4 H 1.48506 * 109.46725 * 239.99880 * 3 2 1 5 5 H 1.48505 * 109.46988 * 359.97438 * 3 2 1 6 6 H 1.48494 * 109.47116 * 119.99856 * 3 2 1 7 7 C 1.37880 * 120.00327 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00461 * 180.02562 * 7 2 1 9 9 C 1.50706 * 119.99611 * 359.97438 * 7 2 1 10 10 C 1.53000 * 109.46735 * 179.97438 * 9 7 2 11 11 S 1.81404 * 109.46946 * 180.02562 * 10 9 7 12 12 O 1.42107 * 110.54111 * 291.62603 * 11 10 9 13 13 O 1.42102 * 110.54223 * 68.37613 * 11 10 9 14 14 C 1.76200 * 104.45035 * 180.02562 * 11 10 9 15 15 N 1.30838 * 125.95791 * 269.69112 * 14 11 10 16 16 C 1.33240 * 109.82890 * 179.86552 * 15 14 11 17 17 C 1.50693 * 125.52820 * 180.12853 * 16 15 14 18 18 C 1.50697 * 109.47192 * 270.29196 * 17 16 15 19 19 C 1.33386 * 125.20236 * 89.71401 * 18 17 16 20 20 C 1.38433 * 114.92363 * 179.86130 * 19 18 17 21 21 C 1.33388 * 114.91685 * 0.43746 * 20 19 18 22 22 S 1.75883 * 109.59435 * 359.76632 * 21 20 19 23 23 N 1.30720 * 108.94359 * 0.39905 * 16 15 14 24 24 N 1.34424 * 125.96445 * 89.99769 * 14 11 10 25 25 H 0.97003 * 126.81990 * 0.02562 * 24 14 11 26 26 H 0.97000 * 120.00354 * 0.02562 * 1 2 3 27 27 H 1.09001 * 109.46797 * 60.00256 * 9 7 2 28 28 H 1.08992 * 109.47518 * 300.00254 * 9 7 2 29 29 H 1.09002 * 109.47398 * 300.00410 * 10 9 7 30 30 H 1.09001 * 109.47194 * 60.00591 * 10 9 7 31 31 H 1.08992 * 109.47409 * 30.29486 * 17 16 15 32 32 H 1.09006 * 109.47300 * 150.29287 * 17 16 15 33 33 H 1.08004 * 122.54333 * 0.02686 * 19 18 17 34 34 H 1.07993 * 122.54447 * 180.20330 * 20 19 18 35 35 H 1.07998 * 125.20522 * 179.79171 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6963 -1.2126 5 1 1.2840 2.7465 -0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0017 10 6 2.2453 -3.6620 0.0015 11 16 1.3384 -5.2331 0.0021 12 8 0.6649 -5.4195 1.2395 13 8 0.6638 -5.4199 -1.2346 14 6 2.5962 -6.4670 0.0025 15 7 3.1406 -7.0094 -1.0564 16 6 4.0578 -7.9021 -0.6860 17 6 4.9006 -8.7310 -1.6205 18 6 4.1859 -10.0210 -1.9308 19 6 3.3343 -10.2046 -2.9409 20 6 2.8011 -11.4789 -3.0300 21 6 3.2126 -12.3276 -2.0868 22 16 4.3411 -11.5126 -1.0118 23 7 4.1040 -7.9463 0.6197 24 7 3.1599 -7.0193 1.0907 25 1 2.9547 -6.8182 2.0172 26 1 -0.4850 0.8400 -0.0004 27 1 0.6241 -2.5575 -0.8880 28 1 0.6247 -2.5564 0.8919 29 1 2.8714 -3.6047 -0.8890 30 1 2.8726 -3.6039 0.8910 31 1 5.0696 -8.1781 -2.5444 32 1 5.8581 -8.9507 -1.1482 33 1 3.0821 -9.4193 -3.6381 34 1 2.1018 -11.7634 -3.8023 35 1 2.9010 -13.3578 -1.9972 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000195157065.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:42:24 Heat of formation + Delta-G solvation = 42.269140 kcal Electronic energy + Delta-G solvation = -22093.716044 eV Core-core repulsion = 18540.704880 eV Total energy + Delta-G solvation = -3553.011165 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 327.050 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -42.43577 -38.14717 -36.98529 -35.82324 -34.18721 -34.06906 -32.29635 -31.35329 -30.82579 -27.19473 -25.82020 -24.02423 -23.58203 -21.68773 -21.03218 -19.57275 -19.35863 -18.40594 -17.45463 -17.03872 -16.40840 -16.10814 -15.70907 -15.60777 -15.25050 -14.65288 -14.57570 -13.68582 -13.66505 -13.29614 -12.92707 -12.79487 -12.69508 -12.62768 -11.97543 -11.96433 -11.86684 -11.84633 -11.52416 -11.15757 -11.13530 -10.99082 -10.59534 -10.53260 -10.49765 -10.46430 -10.25998 -9.85078 -9.35202 -8.96180 -8.68771 -8.58997 -6.21671 -4.28439 0.02041 0.67856 0.90062 1.37738 1.75654 2.25668 2.31693 2.58386 2.85759 3.22882 3.28337 3.29675 3.89373 3.92438 4.08627 4.29808 4.49588 4.58205 4.83765 4.99811 5.13833 5.25654 5.32817 5.39019 5.41253 5.46919 5.74307 5.89657 5.93955 6.05676 6.22211 6.25119 6.49124 7.14149 7.19283 7.53007 7.70412 8.03073 8.74329 9.37044 10.89050 Molecular weight = 327.05amu Principal moments of inertia in cm(-1) A = 0.027471 B = 0.002545 C = 0.002519 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1019.002502 B =10999.268549 C =11115.016021 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.888 5.888 2 C 0.061 3.939 3 Si 0.902 3.098 4 H -0.274 1.274 5 H -0.285 1.285 6 H -0.275 1.275 7 C -0.524 4.524 8 H 0.064 0.936 9 C 0.027 3.973 10 C -0.547 4.547 11 S 2.481 3.519 12 O -0.928 6.928 13 O -0.900 6.900 14 C -0.230 4.230 15 N -0.445 5.445 16 C 0.216 3.784 17 C 0.048 3.952 18 C -0.181 4.181 19 C -0.119 4.119 20 C -0.134 4.134 21 C -0.214 4.214 22 S 0.103 5.897 23 N -0.277 5.277 24 N -0.418 5.418 25 H 0.453 0.547 26 H 0.267 0.733 27 H 0.041 0.959 28 H 0.039 0.961 29 H 0.135 0.865 30 H 0.127 0.873 31 H 0.118 0.882 32 H 0.102 0.898 33 H 0.147 0.853 34 H 0.142 0.858 35 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.491 -20.448 -2.110 22.641 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.526 5.526 2 C -0.143 4.143 3 Si 0.729 3.271 4 H -0.200 1.200 5 H -0.210 1.210 6 H -0.200 1.200 7 C -0.563 4.563 8 H 0.082 0.918 9 C -0.012 4.012 10 C -0.683 4.683 11 S 2.653 3.347 12 O -0.925 6.925 13 O -0.896 6.896 14 C -0.585 4.585 15 N -0.172 5.172 16 C -0.068 4.068 17 C 0.006 3.994 18 C -0.299 4.299 19 C -0.150 4.150 20 C -0.165 4.165 21 C -0.349 4.349 22 S 0.367 5.633 23 N -0.108 5.108 24 N -0.140 5.140 25 H 0.302 0.698 26 H 0.077 0.923 27 H 0.059 0.941 28 H 0.057 0.943 29 H 0.153 0.847 30 H 0.146 0.854 31 H 0.136 0.864 32 H 0.121 0.879 33 H 0.165 0.835 34 H 0.159 0.841 35 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges 9.719 -21.529 -0.815 23.635 hybrid contribution 0.115 1.334 -0.512 1.433 sum 9.834 -20.195 -1.328 22.501 Atomic orbital electron populations 1.69929 1.06113 1.27574 1.48945 1.25050 0.95005 0.99562 0.94667 0.86491 0.79485 0.82296 0.78797 1.19955 1.21009 1.20039 1.20899 0.93130 0.89268 1.53025 0.91822 1.19110 0.92674 0.89842 0.99623 1.30163 1.13499 1.13199 1.11394 1.07416 0.74970 0.76942 0.75386 1.93584 1.68842 1.85541 1.44495 1.93601 1.68006 1.84550 1.43441 1.38764 1.16329 1.16193 0.87213 1.70375 1.08527 1.09569 1.28741 1.24325 0.96364 0.96151 0.89925 1.18352 0.94622 0.88579 0.97817 1.24129 1.06230 0.98273 1.01280 1.20286 0.97279 0.97996 0.99410 1.20216 1.02542 0.93096 1.00626 1.25671 1.04746 1.04088 1.00440 1.84320 1.44489 1.02999 1.31516 1.77853 1.10070 1.10430 1.12495 1.47832 1.27407 1.28623 1.10104 0.69790 0.92280 0.94084 0.94282 0.84675 0.85434 0.86436 0.87929 0.83521 0.84054 0.81884 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.13 13.29 55.43 0.74 -24.39 16 2 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 3 Si 0.90 20.30 29.54 -169.99 -5.02 15.28 16 4 H -0.27 -6.06 7.11 56.52 0.40 -5.65 16 5 H -0.28 -6.38 7.11 56.52 0.40 -5.97 16 6 H -0.27 -6.05 7.11 56.52 0.40 -5.65 16 7 C -0.52 -13.53 9.11 -34.44 -0.31 -13.85 16 8 H 0.06 1.55 7.74 -52.49 -0.41 1.14 16 9 C 0.03 0.63 4.98 -27.88 -0.14 0.49 16 10 C -0.55 -9.34 5.92 37.16 0.22 -9.12 16 11 S 2.48 41.52 5.33 -107.50 -0.57 40.95 16 12 O -0.93 -16.70 17.94 -57.54 -1.03 -17.74 16 13 O -0.90 -17.89 17.94 -57.54 -1.03 -18.92 16 14 C -0.23 -3.52 7.82 -90.65 -0.71 -4.23 16 15 N -0.44 -7.09 11.17 -11.17 -0.12 -7.22 16 16 C 0.22 3.02 7.38 -156.85 -1.16 1.86 16 17 C 0.05 0.49 6.34 -29.04 -0.18 0.31 16 18 C -0.18 -1.94 5.75 -36.01 -0.21 -2.15 16 19 C -0.12 -1.26 10.05 -41.21 -0.41 -1.67 16 20 C -0.13 -1.26 10.18 -41.20 -0.42 -1.68 16 21 C -0.21 -1.90 11.23 29.04 0.33 -1.58 16 22 S 0.10 1.01 23.33 -107.50 -2.51 -1.50 16 23 N -0.28 -3.89 12.80 32.42 0.41 -3.48 16 24 N -0.42 -5.60 7.44 30.19 0.22 -5.38 16 25 H 0.45 4.64 8.96 -182.33 -1.63 3.00 16 26 H 0.27 7.13 8.31 -40.82 -0.34 6.79 16 27 H 0.04 1.01 8.14 -51.93 -0.42 0.58 16 28 H 0.04 0.94 8.14 -51.93 -0.42 0.52 16 29 H 0.14 2.09 8.14 -51.92 -0.42 1.67 16 30 H 0.13 1.83 8.14 -51.92 -0.42 1.41 16 31 H 0.12 1.01 8.14 -51.93 -0.42 0.58 16 32 H 0.10 0.85 8.14 -51.93 -0.42 0.42 16 33 H 0.15 1.44 8.06 -52.48 -0.42 1.02 16 34 H 0.14 1.04 8.06 -52.49 -0.42 0.62 16 35 H 0.16 1.05 8.06 -52.49 -0.42 0.63 16 LS Contribution 342.33 15.07 5.16 5.16 Total: -1.00 -34.38 342.33 -11.83 -46.21 By element: Atomic # 1 Polarization: 6.10 SS G_CDS: -4.98 Total: 1.12 kcal Atomic # 6 Polarization: -27.00 SS G_CDS: -3.09 Total: -30.10 kcal Atomic # 7 Polarization: -41.72 SS G_CDS: 1.25 Total: -40.47 kcal Atomic # 8 Polarization: -34.59 SS G_CDS: -2.06 Total: -36.65 kcal Atomic # 14 Polarization: 20.30 SS G_CDS: -5.02 Total: 15.28 kcal Atomic # 16 Polarization: 42.53 SS G_CDS: -3.08 Total: 39.45 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -34.38 -11.83 -46.21 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000195157065.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.480 kcal (2) G-P(sol) polarization free energy of solvation -34.380 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.100 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.831 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.211 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.269 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds