Wall clock time and date at job start Tue Mar 31 2020 14:42:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86803 * 119.99930 * 2 1 4 4 H 1.48506 * 109.46725 * 239.99880 * 3 2 1 5 5 H 1.48505 * 109.46988 * 359.97438 * 3 2 1 6 6 H 1.48494 * 109.47116 * 119.99856 * 3 2 1 7 7 C 1.37880 * 120.00327 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00461 * 180.02562 * 7 2 1 9 9 C 1.50706 * 119.99611 * 359.97438 * 7 2 1 10 10 C 1.53000 * 109.46735 * 179.97438 * 9 7 2 11 11 S 1.81404 * 109.46946 * 180.02562 * 10 9 7 12 12 O 1.42107 * 110.54111 * 291.62603 * 11 10 9 13 13 O 1.42102 * 110.54223 * 68.37613 * 11 10 9 14 14 C 1.76200 * 104.45035 * 180.02562 * 11 10 9 15 15 N 1.30838 * 125.95791 * 269.69112 * 14 11 10 16 16 C 1.33240 * 109.82890 * 179.86552 * 15 14 11 17 17 C 1.50693 * 125.52820 * 180.12853 * 16 15 14 18 18 C 1.50697 * 109.47192 * 270.29196 * 17 16 15 19 19 C 1.33386 * 125.20236 * 89.71401 * 18 17 16 20 20 C 1.38433 * 114.92363 * 179.86130 * 19 18 17 21 21 C 1.33388 * 114.91685 * 0.43746 * 20 19 18 22 22 S 1.75883 * 109.59435 * 359.76632 * 21 20 19 23 23 N 1.30720 * 108.94359 * 0.39905 * 16 15 14 24 24 N 1.34424 * 125.96445 * 89.99769 * 14 11 10 25 25 H 0.97003 * 126.81990 * 0.02562 * 24 14 11 26 26 H 0.97000 * 120.00354 * 0.02562 * 1 2 3 27 27 H 1.09001 * 109.46797 * 60.00256 * 9 7 2 28 28 H 1.08992 * 109.47518 * 300.00254 * 9 7 2 29 29 H 1.09002 * 109.47398 * 300.00410 * 10 9 7 30 30 H 1.09001 * 109.47194 * 60.00591 * 10 9 7 31 31 H 1.08992 * 109.47409 * 30.29486 * 17 16 15 32 32 H 1.09006 * 109.47300 * 150.29287 * 17 16 15 33 33 H 1.08004 * 122.54333 * 0.02686 * 19 18 17 34 34 H 1.07993 * 122.54447 * 180.20330 * 20 19 18 35 35 H 1.07998 * 125.20522 * 179.79171 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6963 -1.2126 5 1 1.2840 2.7465 -0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0017 10 6 2.2453 -3.6620 0.0015 11 16 1.3384 -5.2331 0.0021 12 8 0.6649 -5.4195 1.2395 13 8 0.6638 -5.4199 -1.2346 14 6 2.5962 -6.4670 0.0025 15 7 3.1406 -7.0094 -1.0564 16 6 4.0578 -7.9021 -0.6860 17 6 4.9006 -8.7310 -1.6205 18 6 4.1859 -10.0210 -1.9308 19 6 3.3343 -10.2046 -2.9409 20 6 2.8011 -11.4789 -3.0300 21 6 3.2126 -12.3276 -2.0868 22 16 4.3411 -11.5126 -1.0118 23 7 4.1040 -7.9463 0.6197 24 7 3.1599 -7.0193 1.0907 25 1 2.9547 -6.8182 2.0172 26 1 -0.4850 0.8400 -0.0004 27 1 0.6241 -2.5575 -0.8880 28 1 0.6247 -2.5564 0.8919 29 1 2.8714 -3.6047 -0.8890 30 1 2.8726 -3.6039 0.8910 31 1 5.0696 -8.1781 -2.5444 32 1 5.8581 -8.9507 -1.1482 33 1 3.0821 -9.4193 -3.6381 34 1 2.1018 -11.7634 -3.8023 35 1 2.9010 -13.3578 -1.9972 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000195157065.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:42:23 Heat of formation + Delta-G solvation = 18.264077 kcal Electronic energy + Delta-G solvation = -22094.756982 eV Core-core repulsion = 18540.704880 eV Total energy + Delta-G solvation = -3554.052102 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 327.050 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -43.55904 -38.87765 -38.44310 -37.29790 -35.91515 -35.12802 -33.41170 -33.17804 -31.77944 -27.99085 -27.65168 -25.25788 -24.40903 -23.39940 -22.05583 -20.75275 -20.14017 -19.76248 -18.76082 -18.18900 -17.77301 -17.42718 -17.07066 -16.66651 -16.48751 -16.34413 -15.52951 -15.23407 -14.50779 -14.43439 -14.12075 -13.94051 -13.76515 -13.56735 -13.43514 -13.41662 -13.35583 -12.91629 -12.90034 -12.83231 -12.53363 -12.23766 -12.20778 -11.78646 -11.73701 -11.64288 -11.59946 -11.36412 -11.08416 -10.59870 -9.70342 -9.42433 -8.23097 -6.36135 -1.37147 -0.30827 -0.03177 0.64945 1.03546 1.18486 1.25761 1.45989 1.47974 1.55660 1.57475 1.81265 2.40595 2.57942 2.72244 3.09894 3.11755 3.36014 3.75377 3.91127 4.05097 4.19634 4.25950 4.49926 4.59139 4.65315 4.70170 4.71614 4.96002 5.17321 5.28384 5.29721 5.33300 5.49850 5.53879 5.71340 6.06748 6.42431 6.76952 7.33855 8.88630 Molecular weight = 327.05amu Principal moments of inertia in cm(-1) A = 0.027471 B = 0.002545 C = 0.002519 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1019.002502 B =10999.268549 C =11115.016021 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.001 3.999 3 Si 0.969 3.031 4 H -0.265 1.265 5 H -0.287 1.287 6 H -0.264 1.264 7 C -0.537 4.537 8 H 0.079 0.921 9 C 0.017 3.983 10 C -0.542 4.542 11 S 2.513 3.487 12 O -0.943 6.943 13 O -0.935 6.935 14 C -0.235 4.235 15 N -0.464 5.464 16 C 0.213 3.787 17 C 0.046 3.954 18 C -0.196 4.196 19 C -0.130 4.130 20 C -0.148 4.148 21 C -0.210 4.210 22 S 0.096 5.904 23 N -0.279 5.279 24 N -0.406 5.406 25 H 0.466 0.534 26 H 0.268 0.732 27 H 0.017 0.983 28 H 0.022 0.978 29 H 0.155 0.845 30 H 0.160 0.840 31 H 0.132 0.868 32 H 0.123 0.877 33 H 0.148 0.852 34 H 0.160 0.840 35 H 0.187 0.813 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.429 -21.259 -1.970 24.217 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.198 4.198 3 Si 0.793 3.207 4 H -0.190 1.190 5 H -0.212 1.212 6 H -0.188 1.188 7 C -0.577 4.577 8 H 0.097 0.903 9 C -0.022 4.022 10 C -0.677 4.677 11 S 2.687 3.313 12 O -0.939 6.939 13 O -0.931 6.931 14 C -0.593 4.593 15 N -0.192 5.192 16 C -0.070 4.070 17 C 0.005 3.995 18 C -0.315 4.315 19 C -0.161 4.161 20 C -0.178 4.178 21 C -0.345 4.345 22 S 0.360 5.640 23 N -0.110 5.110 24 N -0.130 5.130 25 H 0.317 0.683 26 H 0.076 0.924 27 H 0.035 0.965 28 H 0.040 0.960 29 H 0.173 0.827 30 H 0.178 0.822 31 H 0.150 0.850 32 H 0.141 0.859 33 H 0.166 0.834 34 H 0.177 0.823 35 H 0.205 0.795 Dipole moment (debyes) X Y Z Total from point charges 11.651 -22.324 -0.657 25.190 hybrid contribution -0.471 1.445 -0.547 1.615 sum 11.179 -20.879 -1.203 23.714 Atomic orbital electron populations 1.70067 1.07892 1.28411 1.50659 1.26014 0.95791 1.03547 0.94466 0.85433 0.78175 0.77683 0.79391 1.18979 1.21237 1.18816 1.21437 0.94129 0.90352 1.51760 0.90311 1.18965 0.93604 0.91909 0.97721 1.29994 1.12490 1.11151 1.14078 1.06136 0.74414 0.76575 0.74133 1.93558 1.69626 1.85851 1.44909 1.93555 1.69413 1.85196 1.44984 1.38062 1.16630 1.16558 0.88056 1.70379 1.09239 1.10372 1.29254 1.24965 0.95988 0.95764 0.90296 1.18587 0.94744 0.88160 0.98018 1.24235 1.06802 0.98709 1.01705 1.20513 0.97352 0.98683 0.99542 1.20459 1.03076 0.92791 1.01427 1.26014 1.03812 1.05101 0.99607 1.84307 1.44968 1.02932 1.31817 1.77854 1.10051 1.10373 1.12749 1.47874 1.26727 1.27958 1.10483 0.68267 0.92361 0.96451 0.96013 0.82745 0.82213 0.84957 0.85931 0.83429 0.82301 0.79531 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -53.78 13.29 21.45 0.28 -53.49 16 2 C 0.00 0.05 5.46 84.66 0.46 0.51 16 3 Si 0.97 41.24 29.54 68.60 2.03 43.27 16 4 H -0.27 -10.79 7.11 99.48 0.71 -10.09 16 5 H -0.29 -12.18 7.11 99.48 0.71 -11.47 16 6 H -0.26 -10.63 7.11 99.48 0.71 -9.93 16 7 C -0.54 -27.57 9.11 25.60 0.23 -27.34 16 8 H 0.08 3.69 7.74 -2.91 -0.02 3.67 16 9 C 0.02 0.81 4.98 29.85 0.15 0.96 16 10 C -0.54 -17.92 5.92 71.98 0.43 -17.50 16 11 S 2.51 83.08 5.33 -56.49 -0.30 82.78 16 12 O -0.94 -33.59 17.94 -127.65 -2.29 -35.88 16 13 O -0.94 -37.55 17.94 -127.65 -2.29 -39.84 16 14 C -0.24 -6.91 7.82 180.36 1.41 -5.50 16 15 N -0.46 -14.20 11.17 -189.25 -2.11 -16.31 16 16 C 0.21 5.59 7.38 138.63 1.02 6.61 16 17 C 0.05 0.87 6.34 29.10 0.18 1.05 16 18 C -0.20 -3.94 5.75 24.59 0.14 -3.79 16 19 C -0.13 -2.59 10.05 21.22 0.21 -2.38 16 20 C -0.15 -2.54 10.18 21.22 0.22 -2.32 16 21 C -0.21 -3.34 11.23 66.72 0.75 -2.59 16 22 S 0.10 1.74 23.33 -56.49 -1.32 0.42 16 23 N -0.28 -7.29 12.80 -51.34 -0.66 -7.95 16 24 N -0.41 -10.18 7.44 -58.41 -0.43 -10.61 16 25 H 0.47 8.68 8.96 -213.09 -1.91 6.77 16 26 H 0.27 14.58 8.31 -92.71 -0.77 13.81 16 27 H 0.02 0.88 8.14 -2.39 -0.02 0.86 16 28 H 0.02 1.08 8.14 -2.39 -0.02 1.06 16 29 H 0.15 4.53 8.14 -2.39 -0.02 4.51 16 30 H 0.16 4.21 8.14 -2.39 -0.02 4.19 16 31 H 0.13 2.03 8.14 -2.39 -0.02 2.01 16 32 H 0.12 1.76 8.14 -2.38 -0.02 1.74 16 33 H 0.15 2.80 8.06 -2.91 -0.02 2.78 16 34 H 0.16 2.06 8.06 -2.91 -0.02 2.03 16 35 H 0.19 1.94 8.06 -2.91 -0.02 1.91 16 Total: -1.00 -73.41 342.33 -2.66 -76.06 By element: Atomic # 1 Polarization: 14.62 SS G_CDS: -0.77 Total: 13.85 kcal Atomic # 6 Polarization: -57.49 SS G_CDS: 5.21 Total: -52.28 kcal Atomic # 7 Polarization: -85.44 SS G_CDS: -2.92 Total: -88.37 kcal Atomic # 8 Polarization: -71.15 SS G_CDS: -4.58 Total: -75.73 kcal Atomic # 14 Polarization: 41.24 SS G_CDS: 2.03 Total: 43.27 kcal Atomic # 16 Polarization: 84.82 SS G_CDS: -1.62 Total: 83.20 kcal Total: -73.41 -2.66 -76.06 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000195157065.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.327 kcal (2) G-P(sol) polarization free energy of solvation -73.408 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.919 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.655 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.063 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.264 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds