Wall clock time and date at job start Tue Mar 31 2020 15:16:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86800 * 120.00160 * 2 1 4 4 H 1.48506 * 109.46712 * 270.00258 * 3 2 1 5 5 H 1.48502 * 109.47295 * 29.99641 * 3 2 1 6 6 H 1.48499 * 109.47159 * 150.00264 * 3 2 1 7 7 C 1.37881 * 119.99653 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00088 * 359.97438 * 7 2 1 9 9 C 1.50701 * 119.99767 * 179.97438 * 7 2 1 10 10 C 1.53000 * 109.46983 * 179.97438 * 9 7 2 11 11 C 1.52996 * 109.46741 * 179.97438 * 10 9 7 12 12 N 1.46504 * 109.46681 * 179.97438 * 11 10 9 13 13 C 1.34777 * 119.99854 * 179.97438 * 12 11 10 14 14 O 1.21703 * 120.00024 * 0.02562 * 13 12 11 15 15 C 1.46426 * 120.00047 * 180.27524 * 13 12 11 16 16 C 1.34806 * 120.00192 * 179.72507 * 15 13 12 17 17 C 1.47214 * 120.00395 * 180.02562 * 16 15 13 18 18 C 1.39825 * 120.15506 * 359.72290 * 17 16 15 19 19 C 1.38014 * 119.83933 * 179.72147 * 18 17 16 20 20 Cl 1.73599 * 119.92193 * 180.31906 * 19 18 17 21 21 C 1.38494 * 120.15761 * 0.57996 * 19 18 17 22 22 C 1.38490 * 120.31992 * 359.69769 * 21 19 18 23 23 Cl 1.73601 * 119.92121 * 180.02562 * 22 21 19 24 24 C 1.38025 * 120.15818 * 359.97438 * 22 21 19 25 25 H 0.97003 * 119.99577 * 359.97438 * 1 2 3 26 26 H 1.08999 * 109.47046 * 59.99327 * 9 7 2 27 27 H 1.08997 * 109.46721 * 299.99859 * 9 7 2 28 28 H 1.09006 * 109.46826 * 60.00014 * 10 9 7 29 29 H 1.08997 * 109.47123 * 299.99949 * 10 9 7 30 30 H 1.08998 * 109.47328 * 60.00277 * 11 10 9 31 31 H 1.08997 * 109.47540 * 300.00024 * 11 10 9 32 32 H 0.97000 * 120.00410 * 0.02562 * 12 11 10 33 33 H 1.08002 * 120.00178 * 359.73207 * 15 13 12 34 34 H 1.08001 * 120.00160 * 0.02562 * 16 15 13 35 35 H 1.07997 * 120.07665 * 0.03086 * 18 17 16 36 36 H 1.07995 * 119.84135 * 179.71476 * 21 19 18 37 37 H 1.07996 * 120.08287 * 179.97438 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0463 -1.4002 5 1 1.4467 2.6527 0.7000 6 1 3.5468 1.4401 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5115 -1.1942 -0.0011 10 6 4.0215 -2.6367 -0.0010 11 6 5.5514 -2.6366 -0.0022 12 7 6.0397 -4.0179 -0.0015 13 6 7.3648 -4.2642 -0.0029 14 8 8.1557 -3.3392 -0.0043 15 6 7.8528 -5.6448 -0.0082 16 6 9.1782 -5.8911 -0.0152 17 6 9.6689 -7.2791 -0.0212 18 6 8.7632 -8.3443 -0.0138 19 6 9.2304 -9.6430 -0.0252 20 17 8.1077 -10.9671 -0.0244 21 6 10.5927 -9.8923 -0.0319 22 6 11.4956 -8.8422 -0.0335 23 17 13.2010 -9.1666 -0.0426 24 6 11.0428 -7.5383 -0.0289 25 1 -0.4850 0.8401 0.0004 26 1 3.8752 -0.6804 0.8888 27 1 3.8745 -0.6802 -0.8911 28 1 3.6577 -3.1507 -0.8908 29 1 3.6585 -3.1503 0.8892 30 1 5.9155 -2.1225 0.8873 31 1 5.9141 -2.1232 -0.8926 32 1 5.4094 -4.7552 -0.0008 33 1 7.1510 -6.4657 -0.0067 34 1 9.8800 -5.0703 -0.0165 35 1 7.7007 -8.1513 -0.0041 36 1 10.9526 -10.9105 -0.0362 37 1 11.7480 -6.7204 -0.0297 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000264012683.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:16:39 Heat of formation + Delta-G solvation = -27.415674 kcal Electronic energy + Delta-G solvation = -20681.554938 eV Core-core repulsion = 17089.141849 eV Total energy + Delta-G solvation = -3592.413089 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 327.053 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.22301 -39.51238 -37.32047 -36.98270 -35.67435 -34.36413 -33.35190 -31.58550 -31.35213 -30.23455 -27.41037 -24.94013 -23.49071 -22.88212 -21.39119 -20.62116 -19.48273 -18.16219 -17.29515 -16.75454 -16.31821 -16.27482 -15.50985 -15.43777 -14.89212 -14.59301 -14.45885 -14.22801 -14.01469 -13.63450 -12.90542 -12.86365 -12.73424 -12.58802 -12.16703 -12.01379 -11.97025 -11.92661 -11.61745 -11.50725 -11.12063 -10.92453 -10.57647 -10.30338 -10.02803 -9.83015 -9.66294 -9.37388 -9.25406 -9.05957 -8.79136 -8.57563 -6.08360 -4.07238 -0.12651 0.37088 1.22949 1.39592 1.67876 2.84468 3.21996 3.29677 3.29945 3.37435 3.41332 3.98585 4.23955 4.31889 4.42473 4.42742 4.51159 4.73848 4.80772 5.04502 5.25645 5.32987 5.37519 5.42192 5.48805 5.60986 5.81444 5.89862 5.96595 6.01374 6.28241 6.40317 6.64330 6.74956 7.19638 7.33109 7.54917 7.73984 8.21473 8.47956 8.95321 9.53781 11.04794 Molecular weight = 327.05amu Principal moments of inertia in cm(-1) A = 0.022056 B = 0.001755 C = 0.001628 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1269.173929 B =15954.145364 C =17197.528062 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.066 3.934 3 Si 0.880 3.120 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.264 1.264 7 C -0.523 4.523 8 H 0.072 0.928 9 C -0.011 4.011 10 C -0.114 4.114 11 C 0.113 3.887 12 N -0.717 5.717 13 C 0.538 3.462 14 O -0.546 6.546 15 C -0.183 4.183 16 C -0.040 4.040 17 C -0.037 4.037 18 C -0.094 4.094 19 C -0.023 4.023 20 Cl -0.052 7.052 21 C -0.099 4.099 22 C -0.024 4.024 23 Cl -0.054 7.054 24 C -0.087 4.087 25 H 0.263 0.737 26 H 0.019 0.981 27 H 0.015 0.985 28 H 0.061 0.939 29 H 0.061 0.939 30 H 0.066 0.934 31 H 0.066 0.934 32 H 0.401 0.599 33 H 0.131 0.869 34 H 0.144 0.856 35 H 0.147 0.853 36 H 0.146 0.854 37 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.550 -23.610 -0.034 34.061 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.541 5.541 2 C -0.135 4.135 3 Si 0.707 3.293 4 H -0.202 1.202 5 H -0.214 1.214 6 H -0.189 1.189 7 C -0.561 4.561 8 H 0.090 0.910 9 C -0.049 4.049 10 C -0.152 4.152 11 C -0.010 4.010 12 N -0.367 5.367 13 C 0.326 3.674 14 O -0.426 6.426 15 C -0.204 4.204 16 C -0.060 4.060 17 C -0.038 4.038 18 C -0.113 4.113 19 C -0.050 4.050 20 Cl -0.023 7.023 21 C -0.118 4.118 22 C -0.051 4.051 23 Cl -0.025 7.025 24 C -0.105 4.105 25 H 0.073 0.927 26 H 0.037 0.963 27 H 0.033 0.967 28 H 0.079 0.921 29 H 0.080 0.920 30 H 0.084 0.916 31 H 0.084 0.916 32 H 0.236 0.764 33 H 0.149 0.851 34 H 0.162 0.838 35 H 0.164 0.836 36 H 0.164 0.836 37 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges 24.970 -22.952 -0.032 33.917 hybrid contribution -0.027 0.313 -0.022 0.315 sum 24.944 -22.640 -0.053 33.686 Atomic orbital electron populations 1.69915 1.06310 1.26969 1.50925 1.25036 0.94760 0.99253 0.94457 0.86774 0.80396 0.83519 0.78597 1.20235 1.21352 1.18903 1.21091 0.89290 0.94515 1.51175 0.91001 1.19506 0.97304 0.91442 0.96689 1.21713 0.90535 1.01123 1.01804 1.21693 0.96235 0.80951 1.02093 1.46079 1.06515 1.10269 1.73853 1.18261 0.82806 0.89093 0.77268 1.90824 1.55397 1.46120 1.50283 1.23135 0.96718 0.96535 1.03984 1.22219 0.96274 0.93807 0.93658 1.18849 0.92142 0.92967 0.99830 1.21464 1.01201 0.89984 0.98635 1.20631 0.90394 0.89501 1.04459 1.98413 1.60795 1.46289 1.96787 1.21030 0.90553 0.99884 1.00367 1.20632 0.85791 0.94026 1.04652 1.98406 1.11462 1.95784 1.96815 1.21390 0.95276 0.95592 0.98273 0.92684 0.96289 0.96719 0.92058 0.92024 0.91604 0.91601 0.76439 0.85125 0.83812 0.83553 0.83634 0.83524 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.53 13.96 55.43 0.77 -26.75 16 2 C 0.07 1.91 5.47 -17.82 -0.10 1.81 16 3 Si 0.88 21.56 27.47 -169.99 -4.67 16.89 16 4 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 5 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 6 H -0.26 -6.24 6.54 56.52 0.37 -5.87 16 7 C -0.52 -14.56 9.66 -34.44 -0.33 -14.89 16 8 H 0.07 2.13 7.99 -52.49 -0.42 1.71 16 9 C -0.01 -0.26 4.04 -27.88 -0.11 -0.38 16 10 C -0.11 -2.05 5.27 -26.73 -0.14 -2.19 16 11 C 0.11 1.80 5.67 -4.04 -0.02 1.77 16 12 N -0.72 -9.16 5.55 -61.70 -0.34 -9.51 16 13 C 0.54 7.10 7.74 -12.96 -0.10 7.00 16 14 O -0.55 -9.34 16.23 5.19 0.08 -9.25 16 15 C -0.18 -1.66 9.41 -37.50 -0.35 -2.01 16 16 C -0.04 -0.33 9.46 -37.15 -0.35 -0.68 16 17 C -0.04 -0.27 5.87 -105.07 -0.62 -0.88 16 18 C -0.09 -0.63 9.19 -39.07 -0.36 -0.99 16 19 C -0.02 -0.16 6.31 -39.57 -0.25 -0.40 16 20 Cl -0.05 -0.35 28.95 -51.86 -1.50 -1.85 16 21 C -0.10 -0.63 9.60 -39.39 -0.38 -1.01 16 22 C -0.02 -0.16 6.31 -39.57 -0.25 -0.41 16 23 Cl -0.05 -0.34 28.95 -51.86 -1.50 -1.84 16 24 C -0.09 -0.57 9.57 -39.07 -0.37 -0.95 16 25 H 0.26 7.52 8.31 -40.82 -0.34 7.19 16 26 H 0.02 0.44 7.20 -51.93 -0.37 0.06 16 27 H 0.01 0.33 7.57 -51.93 -0.39 -0.06 16 28 H 0.06 1.08 8.14 -51.93 -0.42 0.65 16 29 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 30 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 31 H 0.07 1.10 8.14 -51.93 -0.42 0.67 16 32 H 0.40 3.96 8.45 -40.82 -0.35 3.62 16 33 H 0.13 0.80 6.07 -52.49 -0.32 0.49 16 34 H 0.14 1.27 7.52 -52.49 -0.39 0.87 16 35 H 0.15 0.79 6.17 -52.49 -0.32 0.46 16 36 H 0.15 0.73 8.06 -52.49 -0.42 0.30 16 37 H 0.15 0.77 8.06 -52.49 -0.42 0.34 16 LS Contribution 353.40 15.07 5.33 5.33 Total: -1.00 -32.44 353.40 -9.84 -42.28 By element: Atomic # 1 Polarization: 3.21 SS G_CDS: -4.27 Total: -1.07 kcal Atomic # 6 Polarization: -10.48 SS G_CDS: -3.74 Total: -14.22 kcal Atomic # 7 Polarization: -36.69 SS G_CDS: 0.43 Total: -36.26 kcal Atomic # 8 Polarization: -9.34 SS G_CDS: 0.08 Total: -9.25 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -4.67 Total: 16.89 kcal Atomic # 17 Polarization: -0.69 SS G_CDS: -3.00 Total: -3.69 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -32.44 -9.84 -42.28 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000264012683.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.868 kcal (2) G-P(sol) polarization free energy of solvation -32.443 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.575 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.841 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.284 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.416 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds