Wall clock time and date at job start Tue Mar 31 2020 15:16:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86800 * 120.00160 * 2 1 4 4 H 1.48506 * 109.46712 * 270.00258 * 3 2 1 5 5 H 1.48502 * 109.47295 * 29.99641 * 3 2 1 6 6 H 1.48499 * 109.47159 * 150.00264 * 3 2 1 7 7 C 1.37881 * 119.99653 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00088 * 359.97438 * 7 2 1 9 9 C 1.50701 * 119.99767 * 179.97438 * 7 2 1 10 10 C 1.53000 * 109.46983 * 179.97438 * 9 7 2 11 11 C 1.52996 * 109.46741 * 179.97438 * 10 9 7 12 12 N 1.46504 * 109.46681 * 179.97438 * 11 10 9 13 13 C 1.34777 * 119.99854 * 179.97438 * 12 11 10 14 14 O 1.21703 * 120.00024 * 0.02562 * 13 12 11 15 15 C 1.46426 * 120.00047 * 180.27524 * 13 12 11 16 16 C 1.34806 * 120.00192 * 179.72507 * 15 13 12 17 17 C 1.47214 * 120.00395 * 180.02562 * 16 15 13 18 18 C 1.39825 * 120.15506 * 359.72290 * 17 16 15 19 19 C 1.38014 * 119.83933 * 179.72147 * 18 17 16 20 20 Cl 1.73599 * 119.92193 * 180.31906 * 19 18 17 21 21 C 1.38494 * 120.15761 * 0.57996 * 19 18 17 22 22 C 1.38490 * 120.31992 * 359.69769 * 21 19 18 23 23 Cl 1.73601 * 119.92121 * 180.02562 * 22 21 19 24 24 C 1.38025 * 120.15818 * 359.97438 * 22 21 19 25 25 H 0.97003 * 119.99577 * 359.97438 * 1 2 3 26 26 H 1.08999 * 109.47046 * 59.99327 * 9 7 2 27 27 H 1.08997 * 109.46721 * 299.99859 * 9 7 2 28 28 H 1.09006 * 109.46826 * 60.00014 * 10 9 7 29 29 H 1.08997 * 109.47123 * 299.99949 * 10 9 7 30 30 H 1.08998 * 109.47328 * 60.00277 * 11 10 9 31 31 H 1.08997 * 109.47540 * 300.00024 * 11 10 9 32 32 H 0.97000 * 120.00410 * 0.02562 * 12 11 10 33 33 H 1.08002 * 120.00178 * 359.73207 * 15 13 12 34 34 H 1.08001 * 120.00160 * 0.02562 * 16 15 13 35 35 H 1.07997 * 120.07665 * 0.03086 * 18 17 16 36 36 H 1.07995 * 119.84135 * 179.71476 * 21 19 18 37 37 H 1.07996 * 120.08287 * 179.97438 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0463 -1.4002 5 1 1.4467 2.6527 0.7000 6 1 3.5468 1.4401 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5115 -1.1942 -0.0011 10 6 4.0215 -2.6367 -0.0010 11 6 5.5514 -2.6366 -0.0022 12 7 6.0397 -4.0179 -0.0015 13 6 7.3648 -4.2642 -0.0029 14 8 8.1557 -3.3392 -0.0043 15 6 7.8528 -5.6448 -0.0082 16 6 9.1782 -5.8911 -0.0152 17 6 9.6689 -7.2791 -0.0212 18 6 8.7632 -8.3443 -0.0138 19 6 9.2304 -9.6430 -0.0252 20 17 8.1077 -10.9671 -0.0244 21 6 10.5927 -9.8923 -0.0319 22 6 11.4956 -8.8422 -0.0335 23 17 13.2010 -9.1666 -0.0426 24 6 11.0428 -7.5383 -0.0289 25 1 -0.4850 0.8401 0.0004 26 1 3.8752 -0.6804 0.8888 27 1 3.8745 -0.6802 -0.8911 28 1 3.6577 -3.1507 -0.8908 29 1 3.6585 -3.1503 0.8892 30 1 5.9155 -2.1225 0.8873 31 1 5.9141 -2.1232 -0.8926 32 1 5.4094 -4.7552 -0.0008 33 1 7.1510 -6.4657 -0.0067 34 1 9.8800 -5.0703 -0.0165 35 1 7.7007 -8.1513 -0.0041 36 1 10.9526 -10.9105 -0.0362 37 1 11.7480 -6.7204 -0.0297 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000264012683.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:16:35 Heat of formation + Delta-G solvation = -46.102917 kcal Electronic energy + Delta-G solvation = -20682.365278 eV Core-core repulsion = 17089.141849 eV Total energy + Delta-G solvation = -3593.223429 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 327.053 amu Computer time = 3.57 seconds Orbital eigenvalues (eV) -40.92754 -40.38696 -37.81648 -37.51479 -37.01916 -35.14593 -35.04184 -33.30040 -31.88293 -30.96427 -28.99125 -25.90880 -24.39553 -23.86202 -22.32607 -22.14393 -20.44789 -18.96255 -18.79028 -17.92212 -17.14699 -16.86268 -16.68859 -16.47626 -16.10181 -15.44896 -15.40556 -15.15685 -15.06347 -14.79411 -14.56639 -13.81349 -13.65352 -13.47268 -13.40171 -13.11670 -12.74161 -12.70439 -12.58260 -12.55059 -12.13095 -12.00667 -11.92230 -11.77957 -11.58866 -11.32602 -11.17413 -11.02019 -10.75656 -10.12647 -9.87251 -9.46585 -8.28909 -6.32690 -0.72083 -0.12870 0.72840 0.73239 1.18088 1.37289 1.39004 1.50651 2.14115 2.23030 2.36736 2.54269 3.06866 3.35960 3.74753 3.84037 3.91139 3.92400 4.04866 4.14017 4.21605 4.27011 4.42848 4.51282 4.76842 4.88929 4.89750 4.91451 4.93922 5.04597 5.19909 5.33234 5.37926 5.41803 5.51846 5.56764 5.65880 6.27941 6.58336 6.75596 7.22855 7.32128 8.87368 Molecular weight = 327.05amu Principal moments of inertia in cm(-1) A = 0.022056 B = 0.001755 C = 0.001628 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1269.173929 B =15954.145364 C =17197.528062 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.950 5.950 2 C 0.004 3.996 3 Si 0.947 3.053 4 H -0.267 1.267 5 H -0.285 1.285 6 H -0.248 1.248 7 C -0.530 4.530 8 H 0.038 0.962 9 C -0.013 4.013 10 C -0.101 4.101 11 C 0.126 3.874 12 N -0.710 5.710 13 C 0.536 3.464 14 O -0.592 6.592 15 C -0.193 4.193 16 C -0.022 4.022 17 C -0.046 4.046 18 C -0.091 4.091 19 C -0.031 4.031 20 Cl -0.052 7.052 21 C -0.095 4.095 22 C -0.032 4.032 23 Cl -0.053 7.053 24 C -0.085 4.085 25 H 0.266 0.734 26 H 0.021 0.979 27 H 0.020 0.980 28 H 0.065 0.935 29 H 0.065 0.935 30 H 0.058 0.942 31 H 0.059 0.941 32 H 0.417 0.583 33 H 0.163 0.837 34 H 0.136 0.864 35 H 0.161 0.839 36 H 0.158 0.842 37 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 26.338 -24.446 -0.051 35.934 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.591 5.591 2 C -0.193 4.193 3 Si 0.771 3.229 4 H -0.193 1.193 5 H -0.211 1.211 6 H -0.171 1.171 7 C -0.568 4.568 8 H 0.056 0.944 9 C -0.051 4.051 10 C -0.139 4.139 11 C 0.002 3.998 12 N -0.361 5.361 13 C 0.327 3.673 14 O -0.475 6.475 15 C -0.213 4.213 16 C -0.042 4.042 17 C -0.047 4.047 18 C -0.110 4.110 19 C -0.058 4.058 20 Cl -0.023 7.023 21 C -0.114 4.114 22 C -0.059 4.059 23 Cl -0.024 7.024 24 C -0.104 4.104 25 H 0.075 0.925 26 H 0.039 0.961 27 H 0.038 0.962 28 H 0.084 0.916 29 H 0.084 0.916 30 H 0.076 0.924 31 H 0.077 0.923 32 H 0.254 0.746 33 H 0.180 0.820 34 H 0.154 0.846 35 H 0.178 0.822 36 H 0.175 0.825 37 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges 26.756 -23.834 -0.050 35.832 hybrid contribution -0.559 0.434 -0.017 0.708 sum 26.197 -23.399 -0.067 35.126 Atomic orbital electron populations 1.70063 1.08201 1.28094 1.52707 1.25996 0.95606 1.03453 0.94275 0.85700 0.79523 0.78524 0.79172 1.19261 1.21090 1.17103 1.21473 0.91932 0.93246 1.50185 0.94376 1.19479 0.94053 0.94793 0.96817 1.21485 0.92035 0.98075 1.02271 1.21314 0.94370 0.82715 1.01442 1.45897 1.07034 1.09484 1.73667 1.18840 0.82241 0.90309 0.75942 1.90801 1.56356 1.47858 1.52470 1.23027 0.97494 0.94864 1.05890 1.22243 0.96002 0.94288 0.91686 1.18737 0.92443 0.92341 1.01160 1.21638 1.01916 0.89783 0.97614 1.20682 0.90553 0.89592 1.04977 1.98416 1.60793 1.46283 1.96819 1.21218 0.90483 1.00507 0.99213 1.20674 0.85946 0.94128 1.05109 1.98409 1.11358 1.95769 1.96834 1.21562 0.95405 0.96054 0.97339 0.92544 0.96099 0.96202 0.91609 0.91619 0.92389 0.92305 0.74595 0.82009 0.84577 0.82153 0.82464 0.82457 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.05 13.96 21.45 0.30 -58.75 16 2 C 0.00 0.21 5.47 84.65 0.46 0.67 16 3 Si 0.95 44.09 27.47 68.60 1.88 45.98 16 4 H -0.27 -12.00 7.11 99.48 0.71 -11.29 16 5 H -0.29 -13.07 7.11 99.48 0.71 -12.36 16 6 H -0.25 -10.75 6.54 99.48 0.65 -10.10 16 7 C -0.53 -29.82 9.66 25.60 0.25 -29.57 16 8 H 0.04 2.33 7.99 -2.91 -0.02 2.30 16 9 C -0.01 -0.60 4.04 29.85 0.12 -0.48 16 10 C -0.10 -3.52 5.27 30.59 0.16 -3.36 16 11 C 0.13 3.82 5.67 86.38 0.49 4.31 16 12 N -0.71 -16.94 5.55 -467.34 -2.59 -19.53 16 13 C 0.54 13.43 7.74 86.37 0.67 14.10 16 14 O -0.59 -19.93 16.23 -4.36 -0.07 -20.00 16 15 C -0.19 -3.08 9.41 23.62 0.22 -2.86 16 16 C -0.02 -0.33 9.46 23.84 0.23 -0.11 16 17 C -0.05 -0.57 5.87 -20.15 -0.12 -0.69 16 18 C -0.09 -1.01 9.19 22.60 0.21 -0.80 16 19 C -0.03 -0.36 6.31 22.28 0.14 -0.22 16 20 Cl -0.05 -0.61 28.95 -2.72 -0.08 -0.69 16 21 C -0.09 -1.03 9.60 22.39 0.22 -0.81 16 22 C -0.03 -0.36 6.31 22.28 0.14 -0.22 16 23 Cl -0.05 -0.60 28.95 -2.72 -0.08 -0.68 16 24 C -0.08 -0.97 9.57 22.60 0.22 -0.76 16 25 H 0.27 15.44 8.31 -92.71 -0.77 14.67 16 26 H 0.02 0.93 7.20 -2.39 -0.02 0.91 16 27 H 0.02 0.87 7.57 -2.39 -0.02 0.85 16 28 H 0.07 2.23 8.14 -2.38 -0.02 2.21 16 29 H 0.07 2.23 8.14 -2.39 -0.02 2.21 16 30 H 0.06 1.87 8.14 -2.39 -0.02 1.85 16 31 H 0.06 1.89 8.14 -2.39 -0.02 1.87 16 32 H 0.42 7.28 8.45 -92.71 -0.78 6.50 16 33 H 0.16 1.47 6.07 -2.91 -0.02 1.46 16 34 H 0.14 2.27 7.52 -2.91 -0.02 2.24 16 35 H 0.16 1.24 6.17 -2.91 -0.02 1.22 16 36 H 0.16 1.26 8.06 -2.91 -0.02 1.24 16 37 H 0.16 1.38 8.06 -2.91 -0.02 1.36 16 Total: -1.00 -70.35 353.40 3.03 -67.32 By element: Atomic # 1 Polarization: 6.88 SS G_CDS: 0.27 Total: 7.15 kcal Atomic # 6 Polarization: -24.20 SS G_CDS: 3.40 Total: -20.80 kcal Atomic # 7 Polarization: -75.99 SS G_CDS: -2.30 Total: -78.29 kcal Atomic # 8 Polarization: -19.93 SS G_CDS: -0.07 Total: -20.00 kcal Atomic # 14 Polarization: 44.09 SS G_CDS: 1.88 Total: 45.98 kcal Atomic # 17 Polarization: -1.20 SS G_CDS: -0.16 Total: -1.36 kcal Total: -70.35 3.03 -67.32 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000264012683.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.213 kcal (2) G-P(sol) polarization free energy of solvation -70.348 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.135 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.032 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.316 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.103 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.58 seconds