Wall clock time and date at job start Tue Mar 31 2020 15:24:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86806 * 119.99974 * 2 1 4 4 H 1.48501 * 109.47122 * 240.00199 * 3 2 1 5 5 H 1.48504 * 109.46728 * 359.97438 * 3 2 1 6 6 H 1.48501 * 109.46884 * 119.99778 * 3 2 1 7 7 C 1.37874 * 120.00088 * 179.97438 * 2 1 3 8 8 H 1.08007 * 119.99799 * 179.97438 * 7 2 1 9 9 C 1.50702 * 120.00176 * 0.02562 * 7 2 1 10 10 N 1.46501 * 109.47089 * 179.97438 * 9 7 2 11 11 C 1.46502 * 119.99965 * 278.69068 * 10 9 7 12 12 C 1.52997 * 109.47324 * 274.55628 * 11 10 9 13 13 C 1.53003 * 117.49504 * 243.49579 * 12 11 10 14 14 C 1.52996 * 117.50107 * 174.83717 * 12 11 10 15 15 C 1.34774 * 120.00189 * 98.69160 * 10 9 7 16 16 O 1.21557 * 119.99856 * 186.31215 * 15 10 9 17 17 C 1.47796 * 119.99822 * 6.31872 * 15 10 9 18 18 C 1.39623 * 120.12326 * 150.60353 * 17 15 10 19 19 C 1.37885 * 119.89120 * 180.27154 * 18 17 15 20 20 C 1.38506 * 120.14684 * 359.49039 * 19 18 17 21 21 Cl 1.73593 * 119.87816 * 180.25425 * 20 19 18 22 22 C 1.38598 * 120.24935 * 0.51405 * 20 19 18 23 23 Cl 1.73600 * 119.94756 * 179.76682 * 22 20 19 24 24 C 1.38029 * 120.10626 * 359.73879 * 22 20 19 25 25 H 0.96992 * 120.00342 * 359.97438 * 1 2 3 26 26 H 1.08998 * 109.47117 * 59.99444 * 9 7 2 27 27 H 1.08998 * 109.46669 * 299.99290 * 9 7 2 28 28 H 1.09004 * 109.46851 * 34.55382 * 11 10 9 29 29 H 1.08997 * 109.47478 * 154.54885 * 11 10 9 30 30 H 1.08994 * 115.55041 * 29.16200 * 12 11 10 31 31 H 1.08994 * 117.49995 * 359.97438 * 13 12 11 32 32 H 1.09009 * 117.49374 * 145.01908 * 13 12 11 33 33 H 1.09002 * 117.50177 * 214.97655 * 14 12 11 34 34 H 1.09003 * 117.49881 * 359.97438 * 14 12 11 35 35 H 1.08002 * 120.05599 * 359.97438 * 18 17 15 36 36 H 1.08002 * 119.93073 * 179.75045 * 19 18 17 37 37 H 1.08005 * 120.07262 * 180.02562 * 24 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.1029 1.6965 -1.2125 5 1 1.2840 2.7465 -0.0006 6 1 3.1028 1.6964 1.2126 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2511 -2.4992 0.0005 10 7 2.2031 -3.6126 0.0005 11 6 2.8249 -4.0448 -1.2536 12 6 1.9031 -5.0379 -1.9642 13 6 2.4186 -6.4653 -2.1589 14 6 2.3195 -5.5168 -3.3563 15 6 2.5070 -4.2395 1.1543 16 8 3.3800 -5.0851 1.1749 17 6 1.7788 -3.8987 2.3944 18 6 1.6045 -4.8605 3.3915 19 6 0.9195 -4.5391 4.5441 20 6 0.4133 -3.2618 4.7192 21 17 -0.4423 -2.8628 6.1759 22 6 0.5827 -2.3024 3.7333 23 17 -0.0602 -0.7056 3.9583 24 6 1.2623 -2.6144 2.5731 25 1 -0.4850 0.8399 0.0004 26 1 0.6247 -2.5571 -0.8896 27 1 0.6242 -2.5567 0.8904 28 1 2.9892 -3.1788 -1.8949 29 1 3.7798 -4.5246 -1.0394 30 1 0.8376 -4.9092 -1.7741 31 1 3.4145 -6.6966 -1.7812 32 1 1.6920 -7.2755 -2.0973 33 1 1.5280 -5.7035 -4.0821 34 1 3.2501 -5.1240 -3.7662 35 1 2.0016 -5.8560 3.2580 36 1 0.7809 -5.2837 5.3140 37 1 1.3943 -1.8663 1.8054 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000264108996.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:24:04 Heat of formation + Delta-G solvation = 22.400094 kcal Electronic energy + Delta-G solvation = -23372.234789 eV Core-core repulsion = 19781.981874 eV Total energy + Delta-G solvation = -3590.252915 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 327.053 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.09721 -38.31383 -36.96120 -36.30669 -35.95033 -35.13541 -32.68858 -31.04359 -30.43395 -27.91732 -26.57047 -23.60436 -22.71212 -22.52626 -22.11316 -20.49240 -19.15533 -17.01802 -16.77637 -16.61538 -16.07583 -15.38588 -14.86099 -14.60362 -14.47729 -14.36620 -13.81599 -13.67952 -13.45678 -13.12267 -12.48377 -12.25626 -12.05548 -11.72779 -11.58662 -11.43745 -11.30585 -11.15450 -11.03072 -11.00945 -10.88179 -10.50288 -10.39704 -10.22508 -10.03892 -9.86137 -9.63631 -9.25383 -8.82113 -8.45882 -8.38766 -7.87008 -6.34191 -4.45185 0.93364 1.41631 2.07283 2.55097 3.14541 3.18127 3.23781 3.26985 3.64029 3.99314 4.10096 4.23088 4.88610 4.99226 4.99500 5.05898 5.19744 5.26003 5.32715 5.50452 5.56289 5.73434 5.81197 5.99154 6.04452 6.09254 6.18109 6.25018 6.31963 6.37431 6.50111 6.58105 6.67015 6.99806 7.03289 7.36068 7.59764 7.82686 8.16667 8.60878 8.81217 9.23892 10.69696 Molecular weight = 327.05amu Principal moments of inertia in cm(-1) A = 0.009646 B = 0.005874 C = 0.003934 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2902.090965 B = 4765.892991 C = 7115.691089 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.870 5.870 2 C 0.077 3.923 3 Si 0.892 3.108 4 H -0.274 1.274 5 H -0.283 1.283 6 H -0.271 1.271 7 C -0.555 4.555 8 H 0.066 0.934 9 C 0.206 3.794 10 N -0.582 5.582 11 C 0.149 3.851 12 C -0.161 4.161 13 C -0.178 4.178 14 C -0.178 4.178 15 C 0.559 3.441 16 O -0.563 6.563 17 C -0.118 4.118 18 C -0.056 4.056 19 C -0.126 4.126 20 C -0.016 4.016 21 Cl -0.062 7.062 22 C -0.044 4.044 23 Cl -0.044 7.044 24 C -0.078 4.078 25 H 0.271 0.729 26 H 0.037 0.963 27 H 0.065 0.935 28 H 0.086 0.914 29 H 0.079 0.921 30 H 0.104 0.896 31 H 0.094 0.906 32 H 0.087 0.913 33 H 0.090 0.910 34 H 0.093 0.907 35 H 0.141 0.859 36 H 0.141 0.859 37 H 0.224 0.776 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.459 -6.970 3.939 8.019 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.505 5.505 2 C -0.130 4.130 3 Si 0.718 3.282 4 H -0.199 1.199 5 H -0.209 1.209 6 H -0.196 1.196 7 C -0.593 4.593 8 H 0.084 0.916 9 C 0.087 3.913 10 N -0.311 5.311 11 C 0.026 3.974 12 C -0.180 4.180 13 C -0.215 4.215 14 C -0.216 4.216 15 C 0.348 3.652 16 O -0.444 6.444 17 C -0.122 4.122 18 C -0.075 4.075 19 C -0.145 4.145 20 C -0.043 4.043 21 Cl -0.033 7.033 22 C -0.072 4.072 23 Cl -0.015 7.015 24 C -0.096 4.096 25 H 0.080 0.920 26 H 0.055 0.945 27 H 0.082 0.918 28 H 0.104 0.896 29 H 0.097 0.903 30 H 0.123 0.877 31 H 0.113 0.887 32 H 0.105 0.895 33 H 0.109 0.891 34 H 0.111 0.889 35 H 0.159 0.841 36 H 0.158 0.842 37 H 0.239 0.761 Dipole moment (debyes) X Y Z Total from point charges -0.337 -7.070 4.065 8.162 hybrid contribution 0.063 1.172 0.138 1.182 sum -0.273 -5.898 4.203 7.248 Atomic orbital electron populations 1.69891 1.05845 1.28016 1.46754 1.24935 0.94891 0.99267 0.93928 0.86626 0.79852 0.82498 0.79188 1.19913 1.20862 1.19638 1.21367 0.94018 0.90099 1.53777 0.91586 1.20357 0.88263 0.82627 1.00060 1.48023 1.44094 1.33310 1.05648 1.20897 0.94829 0.96899 0.84820 1.22771 1.00775 0.95953 0.98505 1.23000 1.02630 0.93359 1.02515 1.22905 1.03044 1.04458 0.91158 1.18054 0.82661 0.81089 0.83415 1.90682 1.32570 1.35028 1.86122 1.20051 1.01626 0.94417 0.96101 1.21191 0.95315 0.99688 0.91297 1.20796 1.00408 0.94304 0.99001 1.21062 0.99719 0.94749 0.88808 1.98359 1.75597 1.94145 1.35225 1.20752 1.03117 0.87749 0.95537 1.98386 1.84701 1.21541 1.96841 1.23609 0.90483 0.99111 0.96352 0.91956 0.94459 0.91849 0.89625 0.90315 0.87743 0.88731 0.89458 0.89109 0.88859 0.84135 0.84171 0.76081 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -21.78 13.29 55.43 0.74 -21.04 16 2 C 0.08 1.86 5.34 -17.82 -0.10 1.76 16 3 Si 0.89 19.47 29.54 -169.99 -5.02 14.45 16 4 H -0.27 -5.97 7.11 56.52 0.40 -5.57 16 5 H -0.28 -6.18 7.11 56.52 0.40 -5.77 16 6 H -0.27 -5.95 7.11 56.52 0.40 -5.55 16 7 C -0.55 -13.26 7.53 -34.44 -0.26 -13.52 16 8 H 0.07 1.62 7.81 -52.48 -0.41 1.21 16 9 C 0.21 4.56 4.66 -5.19 -0.02 4.53 16 10 N -0.58 -11.75 2.47 -176.19 -0.43 -12.18 16 11 C 0.15 2.65 5.78 -4.04 -0.02 2.62 16 12 C -0.16 -2.51 6.01 -90.62 -0.54 -3.05 16 13 C -0.18 -2.43 10.18 -26.69 -0.27 -2.71 16 14 C -0.18 -2.28 10.25 -26.70 -0.27 -2.55 16 15 C 0.56 11.46 7.46 -12.35 -0.09 11.36 16 16 O -0.56 -12.23 16.19 5.32 0.09 -12.14 16 17 C -0.12 -2.24 5.60 -104.97 -0.59 -2.83 16 18 C -0.06 -0.88 9.59 -39.19 -0.38 -1.26 16 19 C -0.13 -1.80 9.81 -39.61 -0.39 -2.18 16 20 C -0.02 -0.25 6.33 -39.35 -0.25 -0.50 16 21 Cl -0.06 -0.87 27.94 -51.86 -1.45 -2.32 16 22 C -0.04 -0.80 6.32 -39.53 -0.25 -1.05 16 23 Cl -0.04 -0.81 27.94 -51.86 -1.45 -2.25 16 24 C -0.08 -1.55 7.27 -39.16 -0.28 -1.83 16 25 H 0.27 6.57 8.31 -40.82 -0.34 6.23 16 26 H 0.04 0.87 8.13 -51.93 -0.42 0.45 16 27 H 0.06 1.45 3.99 -52.30 -0.21 1.25 16 28 H 0.09 1.53 8.11 -51.93 -0.42 1.11 16 29 H 0.08 1.41 6.95 -51.93 -0.36 1.05 16 30 H 0.10 1.72 8.14 -51.93 -0.42 1.30 16 31 H 0.09 1.32 8.03 -51.93 -0.42 0.90 16 32 H 0.09 1.10 8.14 -51.92 -0.42 0.68 16 33 H 0.09 1.05 8.14 -51.93 -0.42 0.62 16 34 H 0.09 1.11 8.14 -51.93 -0.42 0.69 16 35 H 0.14 2.01 7.91 -52.49 -0.42 1.59 16 36 H 0.14 1.55 8.06 -52.49 -0.42 1.13 16 37 H 0.22 4.95 3.03 -52.48 -0.16 4.79 16 LS Contribution 343.72 15.07 5.18 5.18 Total: -1.00 -25.27 343.72 -10.13 -35.41 By element: Atomic # 1 Polarization: 10.17 SS G_CDS: -4.06 Total: 6.11 kcal Atomic # 6 Polarization: -7.49 SS G_CDS: -3.72 Total: -11.21 kcal Atomic # 7 Polarization: -33.52 SS G_CDS: 0.30 Total: -33.22 kcal Atomic # 8 Polarization: -12.23 SS G_CDS: 0.09 Total: -12.14 kcal Atomic # 14 Polarization: 19.47 SS G_CDS: -5.02 Total: 14.45 kcal Atomic # 17 Polarization: -1.68 SS G_CDS: -2.90 Total: -4.58 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -25.27 -10.13 -35.41 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000264108996.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.807 kcal (2) G-P(sol) polarization free energy of solvation -25.273 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.534 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.134 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.407 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.400 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds