Wall clock time and date at job start Tue Mar 31 2020 15:24:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86806 * 119.99974 * 2 1 4 4 H 1.48501 * 109.47122 * 240.00199 * 3 2 1 5 5 H 1.48504 * 109.46728 * 359.97438 * 3 2 1 6 6 H 1.48501 * 109.46884 * 119.99778 * 3 2 1 7 7 C 1.37874 * 120.00088 * 179.97438 * 2 1 3 8 8 H 1.08007 * 119.99799 * 179.97438 * 7 2 1 9 9 C 1.50702 * 120.00176 * 0.02562 * 7 2 1 10 10 N 1.46501 * 109.47089 * 179.97438 * 9 7 2 11 11 C 1.46502 * 119.99965 * 278.69068 * 10 9 7 12 12 C 1.52997 * 109.47324 * 274.55628 * 11 10 9 13 13 C 1.53003 * 117.49504 * 243.49579 * 12 11 10 14 14 C 1.52996 * 117.50107 * 174.83717 * 12 11 10 15 15 C 1.34774 * 120.00189 * 98.69160 * 10 9 7 16 16 O 1.21557 * 119.99856 * 186.31215 * 15 10 9 17 17 C 1.47796 * 119.99822 * 6.31872 * 15 10 9 18 18 C 1.39623 * 120.12326 * 150.60353 * 17 15 10 19 19 C 1.37885 * 119.89120 * 180.27154 * 18 17 15 20 20 C 1.38506 * 120.14684 * 359.49039 * 19 18 17 21 21 Cl 1.73593 * 119.87816 * 180.25425 * 20 19 18 22 22 C 1.38598 * 120.24935 * 0.51405 * 20 19 18 23 23 Cl 1.73600 * 119.94756 * 179.76682 * 22 20 19 24 24 C 1.38029 * 120.10626 * 359.73879 * 22 20 19 25 25 H 0.96992 * 120.00342 * 359.97438 * 1 2 3 26 26 H 1.08998 * 109.47117 * 59.99444 * 9 7 2 27 27 H 1.08998 * 109.46669 * 299.99290 * 9 7 2 28 28 H 1.09004 * 109.46851 * 34.55382 * 11 10 9 29 29 H 1.08997 * 109.47478 * 154.54885 * 11 10 9 30 30 H 1.08994 * 115.55041 * 29.16200 * 12 11 10 31 31 H 1.08994 * 117.49995 * 359.97438 * 13 12 11 32 32 H 1.09009 * 117.49374 * 145.01908 * 13 12 11 33 33 H 1.09002 * 117.50177 * 214.97655 * 14 12 11 34 34 H 1.09003 * 117.49881 * 359.97438 * 14 12 11 35 35 H 1.08002 * 120.05599 * 359.97438 * 18 17 15 36 36 H 1.08002 * 119.93073 * 179.75045 * 19 18 17 37 37 H 1.08005 * 120.07262 * 180.02562 * 24 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.1029 1.6965 -1.2125 5 1 1.2840 2.7465 -0.0006 6 1 3.1028 1.6964 1.2126 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2511 -2.4992 0.0005 10 7 2.2031 -3.6126 0.0005 11 6 2.8249 -4.0448 -1.2536 12 6 1.9031 -5.0379 -1.9642 13 6 2.4186 -6.4653 -2.1589 14 6 2.3195 -5.5168 -3.3563 15 6 2.5070 -4.2395 1.1543 16 8 3.3800 -5.0851 1.1749 17 6 1.7788 -3.8987 2.3944 18 6 1.6045 -4.8605 3.3915 19 6 0.9195 -4.5391 4.5441 20 6 0.4133 -3.2618 4.7192 21 17 -0.4423 -2.8628 6.1759 22 6 0.5827 -2.3024 3.7333 23 17 -0.0602 -0.7056 3.9583 24 6 1.2623 -2.6144 2.5731 25 1 -0.4850 0.8399 0.0004 26 1 0.6247 -2.5571 -0.8896 27 1 0.6242 -2.5567 0.8904 28 1 2.9892 -3.1788 -1.8949 29 1 3.7798 -4.5246 -1.0394 30 1 0.8376 -4.9092 -1.7741 31 1 3.4145 -6.6966 -1.7812 32 1 1.6920 -7.2755 -2.0973 33 1 1.5280 -5.7035 -4.0821 34 1 3.2501 -5.1240 -3.7662 35 1 2.0016 -5.8560 3.2580 36 1 0.7809 -5.2837 5.3140 37 1 1.3943 -1.8663 1.8054 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000264108996.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:24:04 Heat of formation + Delta-G solvation = 12.698038 kcal Electronic energy + Delta-G solvation = -23372.655502 eV Core-core repulsion = 19781.981874 eV Total energy + Delta-G solvation = -3590.673628 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 327.053 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.59123 -39.69660 -38.23716 -37.57142 -37.35672 -36.72584 -34.49034 -32.41259 -31.79232 -29.62501 -28.05368 -25.28545 -24.19346 -23.89385 -23.18230 -21.79260 -20.63553 -18.67134 -18.34186 -18.13012 -17.54313 -16.73226 -16.48746 -16.13970 -15.87245 -15.77842 -15.09697 -15.08269 -14.83620 -14.60242 -14.25453 -13.70147 -13.43734 -13.18707 -12.93912 -12.88594 -12.76648 -12.58477 -12.43512 -12.33050 -12.27074 -12.13525 -11.87318 -11.79080 -11.57467 -11.33280 -10.88603 -10.79225 -10.61069 -9.84308 -9.82484 -9.49125 -8.21875 -6.37311 -0.43293 0.07925 0.79682 1.18374 1.41460 1.44475 1.49345 1.67203 2.14900 2.38938 2.58008 2.94439 3.07458 3.53540 3.68043 3.85272 4.01979 4.04893 4.14180 4.16198 4.22234 4.40437 4.65009 4.77918 4.79342 4.83125 4.85418 4.89912 5.01289 5.02625 5.20941 5.26403 5.27747 5.29418 5.54799 5.64446 5.76682 5.98247 6.49348 6.75349 7.17513 7.35036 8.80959 Molecular weight = 327.05amu Principal moments of inertia in cm(-1) A = 0.009646 B = 0.005874 C = 0.003934 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2902.090965 B = 4765.892991 C = 7115.691089 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.046 3.954 3 Si 0.935 3.065 4 H -0.271 1.271 5 H -0.280 1.280 6 H -0.273 1.273 7 C -0.558 4.558 8 H 0.054 0.946 9 C 0.222 3.778 10 N -0.585 5.585 11 C 0.148 3.852 12 C -0.185 4.185 13 C -0.170 4.170 14 C -0.156 4.156 15 C 0.555 3.445 16 O -0.580 6.580 17 C -0.137 4.137 18 C -0.047 4.047 19 C -0.104 4.104 20 C -0.014 4.014 21 Cl -0.041 7.041 22 C -0.057 4.057 23 Cl -0.053 7.053 24 C -0.097 4.097 25 H 0.270 0.730 26 H 0.018 0.982 27 H 0.062 0.938 28 H 0.078 0.922 29 H 0.075 0.925 30 H 0.091 0.909 31 H 0.091 0.909 32 H 0.100 0.900 33 H 0.108 0.892 34 H 0.103 0.897 35 H 0.161 0.839 36 H 0.183 0.817 37 H 0.197 0.803 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.475 -8.313 4.821 9.621 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.526 5.526 2 C -0.158 4.158 3 Si 0.761 3.239 4 H -0.196 1.196 5 H -0.205 1.205 6 H -0.198 1.198 7 C -0.595 4.595 8 H 0.072 0.928 9 C 0.102 3.898 10 N -0.313 5.313 11 C 0.026 3.974 12 C -0.204 4.204 13 C -0.207 4.207 14 C -0.194 4.194 15 C 0.345 3.655 16 O -0.463 6.463 17 C -0.141 4.141 18 C -0.066 4.066 19 C -0.123 4.123 20 C -0.042 4.042 21 Cl -0.012 7.012 22 C -0.084 4.084 23 Cl -0.024 7.024 24 C -0.115 4.115 25 H 0.080 0.920 26 H 0.036 0.964 27 H 0.079 0.921 28 H 0.096 0.904 29 H 0.093 0.907 30 H 0.109 0.891 31 H 0.110 0.890 32 H 0.119 0.881 33 H 0.127 0.873 34 H 0.122 0.878 35 H 0.178 0.822 36 H 0.200 0.800 37 H 0.213 0.787 Dipole moment (debyes) X Y Z Total from point charges -0.349 -8.414 4.936 9.761 hybrid contribution 0.063 1.537 -0.054 1.539 sum -0.287 -6.877 4.882 8.439 Atomic orbital electron populations 1.69957 1.06629 1.28384 1.47628 1.25404 0.95404 1.01281 0.93759 0.85942 0.78960 0.80021 0.78981 1.19642 1.20502 1.19825 1.21426 0.93428 0.91122 1.53570 0.92796 1.20040 0.88168 0.82670 0.98894 1.48050 1.43747 1.32872 1.06655 1.20959 0.95194 0.97187 0.84068 1.22594 0.99515 0.97063 1.01244 1.23042 1.02590 0.92511 1.02580 1.23024 1.03793 1.02375 0.90174 1.18347 0.82531 0.80769 0.83901 1.90653 1.33319 1.35840 1.86473 1.20060 1.02592 0.94975 0.96436 1.21443 0.94677 0.99740 0.90749 1.21224 0.97910 0.94198 0.98952 1.21204 0.99296 0.94763 0.88937 1.98371 1.75029 1.94133 1.33636 1.20800 1.03617 0.87999 0.95997 1.98375 1.84813 1.22349 1.96827 1.23233 0.92372 0.99145 0.96796 0.92024 0.96404 0.92117 0.90415 0.90651 0.89075 0.89039 0.88132 0.87342 0.87825 0.82184 0.79953 0.78689 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -45.46 13.29 21.45 0.28 -45.17 16 2 C 0.05 2.28 5.34 84.65 0.45 2.73 16 3 Si 0.94 40.26 29.54 68.60 2.03 42.29 16 4 H -0.27 -11.49 7.11 99.48 0.71 -10.79 16 5 H -0.28 -11.83 7.11 99.48 0.71 -11.12 16 6 H -0.27 -11.75 7.11 99.48 0.71 -11.05 16 7 C -0.56 -27.49 7.53 25.60 0.19 -27.30 16 8 H 0.05 2.74 7.81 -2.91 -0.02 2.71 16 9 C 0.22 10.22 4.66 85.63 0.40 10.62 16 10 N -0.59 -24.32 2.47 -829.63 -2.05 -26.37 16 11 C 0.15 5.42 5.78 86.38 0.50 5.92 16 12 C -0.18 -5.76 6.01 -10.79 -0.06 -5.82 16 13 C -0.17 -4.43 10.18 30.62 0.31 -4.12 16 14 C -0.16 -3.74 10.25 30.62 0.31 -3.43 16 15 C 0.56 22.99 7.46 86.77 0.65 23.64 16 16 O -0.58 -25.18 16.19 -3.90 -0.06 -25.25 16 17 C -0.14 -5.16 5.60 -20.09 -0.11 -5.28 16 18 C -0.05 -1.39 9.59 22.52 0.22 -1.17 16 19 C -0.10 -2.62 9.81 22.25 0.22 -2.41 16 20 C -0.01 -0.42 6.33 22.42 0.14 -0.27 16 21 Cl -0.04 -1.04 27.94 -2.72 -0.08 -1.12 16 22 C -0.06 -2.04 6.32 22.31 0.14 -1.90 16 23 Cl -0.05 -1.93 27.94 -2.72 -0.08 -2.01 16 24 C -0.10 -3.92 7.27 22.54 0.16 -3.75 16 25 H 0.27 13.33 8.31 -92.71 -0.77 12.56 16 26 H 0.02 0.88 8.13 -2.39 -0.02 0.86 16 27 H 0.06 2.90 3.99 -2.74 -0.01 2.89 16 28 H 0.08 2.88 8.11 -2.38 -0.02 2.86 16 29 H 0.08 2.76 6.95 -2.39 -0.02 2.74 16 30 H 0.09 3.08 8.14 -2.39 -0.02 3.06 16 31 H 0.09 2.45 8.03 -2.39 -0.02 2.43 16 32 H 0.10 2.34 8.14 -2.38 -0.02 2.32 16 33 H 0.11 2.24 8.14 -2.39 -0.02 2.22 16 34 H 0.10 2.27 8.14 -2.39 -0.02 2.26 16 35 H 0.16 4.10 7.91 -2.91 -0.02 4.08 16 36 H 0.18 3.07 8.06 -2.91 -0.02 3.05 16 37 H 0.20 9.02 3.03 -2.91 -0.01 9.01 16 Total: -1.00 -54.78 343.72 4.68 -50.10 By element: Atomic # 1 Polarization: 18.96 SS G_CDS: 1.11 Total: 20.07 kcal Atomic # 6 Polarization: -16.07 SS G_CDS: 3.52 Total: -12.55 kcal Atomic # 7 Polarization: -69.78 SS G_CDS: -1.76 Total: -71.54 kcal Atomic # 8 Polarization: -25.18 SS G_CDS: -0.06 Total: -25.25 kcal Atomic # 14 Polarization: 40.26 SS G_CDS: 2.03 Total: 42.29 kcal Atomic # 17 Polarization: -2.98 SS G_CDS: -0.15 Total: -3.13 kcal Total: -54.78 4.68 -50.10 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000264108996.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.803 kcal (2) G-P(sol) polarization free energy of solvation -54.784 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.019 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.679 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.105 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.698 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds