Wall clock time and date at job start Tue Mar 31 2020 15:54:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.30733 * 120.01289 * 2 1 4 4 N 1.39728 * 119.09919 * 180.02562 * 3 2 1 5 5 C 1.38127 * 119.80936 * 0.02562 * 4 3 2 6 6 N 1.32021 * 106.67523 * 180.02562 * 5 4 3 7 7 N 1.28648 * 109.77347 * 359.97438 * 6 5 4 8 8 C 1.31351 * 110.35646 * 359.97438 * 7 6 5 9 9 S 1.76202 * 126.36651 * 180.02562 * 8 7 6 10 10 C 1.81394 * 103.00354 * 359.97438 * 9 8 7 11 11 C 1.52999 * 109.47477 * 179.97438 * 10 9 8 12 12 C 1.52997 * 109.47332 * 179.97438 * 11 10 9 13 13 S 1.81002 * 109.47338 * 180.02562 * 12 11 10 14 14 C 1.76198 * 100.00096 * 180.02562 * 13 12 11 15 15 H 1.07993 * 120.00352 * 0.02562 * 14 13 12 16 16 C 1.38797 * 119.99617 * 179.97438 * 14 13 12 17 17 N 1.31625 * 120.00497 * 0.02562 * 16 14 13 18 18 Si 1.86802 * 119.99756 * 180.02562 * 16 14 13 19 19 H 1.48501 * 109.47142 * 0.02562 * 18 16 14 20 20 H 1.48497 * 109.47470 * 120.00364 * 18 16 14 21 21 H 1.48509 * 109.47315 * 240.00305 * 18 16 14 22 22 N 1.33879 * 119.72686 * 359.72868 * 5 4 3 23 23 C 1.31537 * 120.51569 * 0.54517 * 22 5 4 24 24 O 1.35467 * 119.56497 * 179.72431 * 23 22 5 25 25 H 1.09008 * 109.47314 * 269.98107 * 1 2 3 26 26 H 1.08997 * 109.46635 * 29.97827 * 1 2 3 27 27 H 1.09000 * 109.47232 * 149.98071 * 1 2 3 28 28 H 1.08999 * 109.47461 * 300.00219 * 10 9 8 29 29 H 1.09000 * 109.47237 * 59.99660 * 10 9 8 30 30 H 1.08996 * 109.47395 * 299.99941 * 11 10 9 31 31 H 1.09008 * 109.46945 * 60.00145 * 11 10 9 32 32 H 1.08993 * 109.47624 * 300.00333 * 12 11 10 33 33 H 1.09000 * 109.46987 * 60.00242 * 12 11 10 34 34 H 0.97002 * 120.00345 * 179.97438 * 17 16 14 35 35 H 0.96700 * 114.00171 * 269.73012 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1609 1.1320 0.0000 4 7 3.5580 1.1098 -0.0005 5 6 4.2255 -0.0996 -0.0016 6 7 5.5158 0.1799 -0.0013 7 7 5.6849 1.4552 -0.0008 8 6 4.5241 2.0700 -0.0012 9 16 4.2650 3.8129 -0.0012 10 6 5.9532 4.4766 0.0001 11 6 5.9002 6.0056 -0.0005 12 6 7.3241 6.5653 0.0013 13 16 7.2614 8.3743 0.0014 14 6 8.9849 8.7402 0.0027 15 1 9.7074 7.9375 0.0028 16 6 9.4140 10.0602 0.0026 17 7 8.5335 11.0386 0.0020 18 14 11.2413 10.4482 0.0034 19 1 12.0163 9.1814 0.0034 20 1 11.5807 11.2355 -1.2091 21 1 11.5797 11.2360 1.2159 22 7 3.5284 -1.2425 0.0034 23 6 2.2132 -1.2228 -0.0015 24 8 1.5272 -2.3909 -0.0019 25 1 -0.3634 -0.0003 1.0277 26 1 -0.3632 0.8902 -0.5135 27 1 -0.3634 -0.8898 -0.5141 28 1 6.4787 4.1312 0.8904 29 1 6.4801 4.1313 -0.8894 30 1 5.3749 6.3507 -0.8910 31 1 5.3732 6.3512 0.8890 32 1 7.8490 6.2204 0.8920 33 1 7.8514 6.2198 -0.8878 34 1 8.8335 11.9610 0.0023 35 1 1.3276 -2.7295 -0.8855 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000266692334.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:54:35 Heat of formation + Delta-G solvation = 110.707903 kcal Electronic energy + Delta-G solvation = -21135.687983 eV Core-core repulsion = 17617.937297 eV Total energy + Delta-G solvation = -3517.750686 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 327.056 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -43.85720 -40.83077 -38.05025 -35.62106 -34.49996 -33.93391 -32.44992 -30.76848 -29.55234 -27.21535 -25.81656 -25.47717 -24.19045 -23.20605 -21.61206 -20.47332 -20.09021 -18.61259 -17.75806 -17.51348 -17.40409 -16.20953 -15.34457 -15.18314 -14.91862 -14.81410 -14.68534 -14.16005 -13.76225 -13.30458 -13.17946 -13.14028 -13.02961 -12.92370 -12.64225 -12.52341 -11.99402 -11.93327 -11.63304 -11.10017 -10.95140 -10.76228 -10.68856 -10.68152 -10.58854 -10.39140 -10.04531 -9.61941 -9.08634 -8.36098 -7.91483 -6.57044 -6.25225 -3.96172 -0.72555 0.10045 0.34089 1.06460 1.74801 1.89118 2.00587 2.45188 2.87203 3.20842 3.21745 3.29910 3.44234 3.52237 3.73039 4.08267 4.19607 4.39647 4.60142 4.70444 4.92764 4.94846 5.03087 5.10208 5.11506 5.24433 5.33254 5.50207 5.68126 5.79150 5.86889 6.14500 6.38128 6.38458 6.61036 6.68923 7.59622 7.76512 8.35186 9.21608 10.82971 Molecular weight = 327.06amu Principal moments of inertia in cm(-1) A = 0.039862 B = 0.001908 C = 0.001825 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 702.256795 B =14674.259212 C =15342.877629 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.094 4.094 2 C 0.113 3.887 3 N -0.181 5.181 4 N -0.338 5.338 5 C 0.310 3.690 6 N -0.209 5.209 7 N -0.242 5.242 8 C 0.204 3.796 9 S 0.033 5.967 10 C -0.102 4.102 11 C -0.084 4.084 12 C -0.109 4.109 13 S -0.128 6.128 14 C -0.516 4.516 15 H 0.075 0.925 16 C 0.071 3.929 17 N -0.869 5.869 18 Si 0.919 3.081 19 H -0.271 1.271 20 H -0.280 1.280 21 H -0.280 1.280 22 N -0.393 5.393 23 C 0.351 3.649 24 O -0.455 6.455 25 H 0.104 0.896 26 H 0.096 0.904 27 H 0.100 0.900 28 H 0.100 0.900 29 H 0.100 0.900 30 H 0.079 0.921 31 H 0.079 0.921 32 H 0.066 0.934 33 H 0.066 0.934 34 H 0.267 0.733 35 H 0.416 0.584 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.505 -24.841 -1.767 32.260 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.071 4.071 3 N 0.001 4.999 4 N -0.125 5.125 5 C -0.048 4.048 6 N -0.059 5.059 7 N -0.091 5.091 8 C -0.167 4.167 9 S 0.264 5.736 10 C -0.253 4.253 11 C -0.124 4.124 12 C -0.260 4.260 13 S 0.100 5.900 14 C -0.664 4.664 15 H 0.093 0.907 16 C -0.138 4.138 17 N -0.505 5.505 18 Si 0.745 3.255 19 H -0.195 1.195 20 H -0.206 1.206 21 H -0.206 1.206 22 N -0.121 5.121 23 C 0.130 3.870 24 O -0.261 6.261 25 H 0.123 0.877 26 H 0.115 0.885 27 H 0.119 0.881 28 H 0.118 0.882 29 H 0.118 0.882 30 H 0.098 0.902 31 H 0.098 0.902 32 H 0.085 0.915 33 H 0.085 0.915 34 H 0.077 0.923 35 H 0.278 0.722 Dipole moment (debyes) X Y Z Total from point charges -20.265 -23.142 -1.174 30.783 hybrid contribution 1.878 -1.521 -0.418 2.452 sum -18.388 -24.662 -1.592 30.804 Atomic orbital electron populations 1.20833 0.83045 1.05697 1.05708 1.24062 1.00443 0.88667 0.93920 1.75994 0.86247 1.24075 1.13605 1.48252 1.04342 1.08361 1.51573 1.22895 0.91343 0.81123 1.09419 1.74813 1.08277 1.06379 1.16390 1.75128 1.17388 0.98337 1.18231 1.26672 0.84396 0.99012 1.06640 1.85874 1.13880 0.83099 1.90717 1.23993 0.93459 1.00147 1.07676 1.21083 0.98281 0.88874 1.04200 1.23244 0.96610 1.02501 1.03597 1.84639 1.13014 0.95404 1.96899 1.22731 0.90350 0.94860 1.58504 0.90730 1.25019 0.98985 0.95255 0.94541 1.70023 1.33691 0.99528 1.47260 0.86100 0.82948 0.78523 0.77889 1.19542 1.20563 1.20553 1.67301 1.07756 1.25111 1.11950 1.19725 0.86068 0.86925 0.94309 1.84788 1.71504 1.35012 1.34804 0.87739 0.88493 0.88096 0.88155 0.88156 0.90208 0.90211 0.91543 0.91545 0.92315 0.72234 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.11 9.98 36.01 0.36 0.25 16 2 C 0.11 0.70 6.93 -81.93 -0.57 0.13 16 3 N -0.18 -1.82 11.95 33.92 0.41 -1.41 16 4 N -0.34 -4.48 4.11 -13.78 -0.06 -4.54 16 5 C 0.31 4.37 9.11 -322.01 -2.93 1.43 16 6 N -0.21 -3.38 12.27 29.87 0.37 -3.01 16 7 N -0.24 -3.85 11.80 30.63 0.36 -3.49 16 8 C 0.20 2.91 8.43 -88.58 -0.75 2.17 16 9 S 0.03 0.41 22.16 -107.50 -2.38 -1.97 16 10 C -0.10 -1.34 5.60 37.16 0.21 -1.13 16 11 C -0.08 -1.27 5.22 -26.73 -0.14 -1.41 16 12 C -0.11 -2.10 5.67 37.16 0.21 -1.88 16 13 S -0.13 -3.25 21.44 -107.50 -2.30 -5.56 16 14 C -0.52 -14.62 9.50 30.94 0.29 -14.33 16 15 H 0.07 2.05 7.80 -52.49 -0.41 1.64 16 16 C 0.07 2.00 5.49 -17.43 -0.10 1.91 16 17 N -0.87 -25.74 13.22 55.49 0.73 -25.00 16 18 Si 0.92 21.48 29.55 -169.99 -5.02 16.45 16 19 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 20 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 21 H -0.28 -6.43 7.11 56.52 0.40 -6.02 16 22 N -0.39 -4.49 10.51 -13.65 -0.14 -4.63 16 23 C 0.35 2.45 7.75 -16.55 -0.13 2.32 16 24 O -0.45 -1.43 12.63 -18.09 -0.23 -1.66 16 25 H 0.10 0.06 8.14 -51.92 -0.42 -0.37 16 26 H 0.10 0.09 8.14 -51.93 -0.42 -0.33 16 27 H 0.10 -0.16 7.55 -51.93 -0.39 -0.56 16 28 H 0.10 1.30 8.14 -51.92 -0.42 0.88 16 29 H 0.10 1.29 8.14 -51.92 -0.42 0.87 16 30 H 0.08 1.19 8.14 -51.93 -0.42 0.76 16 31 H 0.08 1.19 8.14 -51.92 -0.42 0.77 16 32 H 0.07 1.27 8.14 -51.92 -0.42 0.84 16 33 H 0.07 1.26 8.14 -51.92 -0.42 0.84 16 34 H 0.27 7.35 8.31 -40.82 -0.34 7.01 16 35 H 0.42 -1.01 9.06 45.56 0.41 -0.60 16 LS Contribution 342.51 15.07 5.16 5.16 Total: -1.00 -36.73 342.51 -9.56 -46.29 By element: Atomic # 1 Polarization: -3.18 SS G_CDS: -2.91 Total: -6.09 kcal Atomic # 6 Polarization: -7.00 SS G_CDS: -3.54 Total: -10.54 kcal Atomic # 7 Polarization: -43.75 SS G_CDS: 1.67 Total: -42.08 kcal Atomic # 8 Polarization: -1.43 SS G_CDS: -0.23 Total: -1.66 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -5.02 Total: 16.45 kcal Atomic # 16 Polarization: -2.84 SS G_CDS: -4.69 Total: -7.52 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -36.73 -9.56 -46.29 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000266692334.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 156.996 kcal (2) G-P(sol) polarization free energy of solvation -36.731 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 120.264 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.556 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.288 kcal (6) G-S(sol) free energy of system = (1) + (5) 110.708 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds