Wall clock time and date at job start Tue Mar 31 2020 15:54:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.30733 * 120.01289 * 2 1 4 4 N 1.39728 * 119.09919 * 180.02562 * 3 2 1 5 5 C 1.38127 * 119.80936 * 0.02562 * 4 3 2 6 6 N 1.32021 * 106.67523 * 180.02562 * 5 4 3 7 7 N 1.28648 * 109.77347 * 359.97438 * 6 5 4 8 8 C 1.31351 * 110.35646 * 359.97438 * 7 6 5 9 9 S 1.76202 * 126.36651 * 180.02562 * 8 7 6 10 10 C 1.81394 * 103.00354 * 359.97438 * 9 8 7 11 11 C 1.52999 * 109.47477 * 179.97438 * 10 9 8 12 12 C 1.52997 * 109.47332 * 179.97438 * 11 10 9 13 13 S 1.81002 * 109.47338 * 180.02562 * 12 11 10 14 14 C 1.76198 * 100.00096 * 180.02562 * 13 12 11 15 15 H 1.07993 * 120.00352 * 0.02562 * 14 13 12 16 16 C 1.38797 * 119.99617 * 179.97438 * 14 13 12 17 17 N 1.31625 * 120.00497 * 0.02562 * 16 14 13 18 18 Si 1.86802 * 119.99756 * 180.02562 * 16 14 13 19 19 H 1.48501 * 109.47142 * 0.02562 * 18 16 14 20 20 H 1.48497 * 109.47470 * 120.00364 * 18 16 14 21 21 H 1.48509 * 109.47315 * 240.00305 * 18 16 14 22 22 N 1.33879 * 119.72686 * 359.72868 * 5 4 3 23 23 C 1.31537 * 120.51569 * 0.54517 * 22 5 4 24 24 O 1.35467 * 119.56497 * 179.72431 * 23 22 5 25 25 H 1.09008 * 109.47314 * 269.98107 * 1 2 3 26 26 H 1.08997 * 109.46635 * 29.97827 * 1 2 3 27 27 H 1.09000 * 109.47232 * 149.98071 * 1 2 3 28 28 H 1.08999 * 109.47461 * 300.00219 * 10 9 8 29 29 H 1.09000 * 109.47237 * 59.99660 * 10 9 8 30 30 H 1.08996 * 109.47395 * 299.99941 * 11 10 9 31 31 H 1.09008 * 109.46945 * 60.00145 * 11 10 9 32 32 H 1.08993 * 109.47624 * 300.00333 * 12 11 10 33 33 H 1.09000 * 109.46987 * 60.00242 * 12 11 10 34 34 H 0.97002 * 120.00345 * 179.97438 * 17 16 14 35 35 H 0.96700 * 114.00171 * 269.73012 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1609 1.1320 0.0000 4 7 3.5580 1.1098 -0.0005 5 6 4.2255 -0.0996 -0.0016 6 7 5.5158 0.1799 -0.0013 7 7 5.6849 1.4552 -0.0008 8 6 4.5241 2.0700 -0.0012 9 16 4.2650 3.8129 -0.0012 10 6 5.9532 4.4766 0.0001 11 6 5.9002 6.0056 -0.0005 12 6 7.3241 6.5653 0.0013 13 16 7.2614 8.3743 0.0014 14 6 8.9849 8.7402 0.0027 15 1 9.7074 7.9375 0.0028 16 6 9.4140 10.0602 0.0026 17 7 8.5335 11.0386 0.0020 18 14 11.2413 10.4482 0.0034 19 1 12.0163 9.1814 0.0034 20 1 11.5807 11.2355 -1.2091 21 1 11.5797 11.2360 1.2159 22 7 3.5284 -1.2425 0.0034 23 6 2.2132 -1.2228 -0.0015 24 8 1.5272 -2.3909 -0.0019 25 1 -0.3634 -0.0003 1.0277 26 1 -0.3632 0.8902 -0.5135 27 1 -0.3634 -0.8898 -0.5141 28 1 6.4787 4.1312 0.8904 29 1 6.4801 4.1313 -0.8894 30 1 5.3749 6.3507 -0.8910 31 1 5.3732 6.3512 0.8890 32 1 7.8490 6.2204 0.8920 33 1 7.8514 6.2198 -0.8878 34 1 8.8335 11.9610 0.0023 35 1 1.3276 -2.7295 -0.8855 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000266692334.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:54:34 Heat of formation + Delta-G solvation = 84.401111 kcal Electronic energy + Delta-G solvation = -21136.828731 eV Core-core repulsion = 17617.937297 eV Total energy + Delta-G solvation = -3518.891434 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 327.056 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -44.75500 -41.50068 -38.59505 -36.33398 -35.79248 -34.64338 -34.59145 -31.68788 -30.03999 -28.62391 -27.59428 -26.45522 -24.91152 -24.14130 -22.89809 -21.27199 -20.67658 -19.57829 -19.29875 -18.61796 -18.30151 -16.89189 -16.83099 -16.57664 -16.49788 -15.62818 -15.44564 -15.15942 -14.91736 -14.41925 -14.18705 -13.78627 -13.70525 -13.57370 -13.54518 -13.47833 -13.29487 -13.17288 -12.95089 -12.90347 -12.61859 -12.43806 -12.01789 -11.66492 -11.47863 -11.44810 -11.15185 -11.14002 -10.96834 -10.33305 -8.89274 -8.65441 -8.37485 -6.12892 -1.38327 -0.63551 -0.59731 0.21435 0.85062 0.86834 1.32914 1.33535 1.38533 1.49833 1.62315 1.75499 2.20682 2.27702 2.76896 2.97129 3.23336 3.30325 3.40361 3.64719 3.80802 3.88435 3.99606 4.12618 4.31747 4.37875 4.60767 4.66971 4.72541 4.76530 4.99005 5.12601 5.16951 5.17993 5.41663 5.91021 6.19150 6.27921 6.79966 7.05590 8.71973 Molecular weight = 327.06amu Principal moments of inertia in cm(-1) A = 0.039862 B = 0.001908 C = 0.001825 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 702.256795 B =14674.259212 C =15342.877629 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.094 4.094 2 C 0.131 3.869 3 N -0.210 5.210 4 N -0.346 5.346 5 C 0.316 3.684 6 N -0.259 5.259 7 N -0.271 5.271 8 C 0.190 3.810 9 S 0.059 5.941 10 C -0.098 4.098 11 C -0.072 4.072 12 C -0.087 4.087 13 S -0.186 6.186 14 C -0.538 4.538 15 H 0.073 0.927 16 C 0.016 3.984 17 N -0.906 5.906 18 Si 0.993 3.007 19 H -0.264 1.264 20 H -0.272 1.272 21 H -0.272 1.272 22 N -0.439 5.439 23 C 0.392 3.608 24 O -0.443 6.443 25 H 0.121 0.879 26 H 0.104 0.896 27 H 0.140 0.860 28 H 0.101 0.899 29 H 0.102 0.898 30 H 0.083 0.917 31 H 0.083 0.917 32 H 0.068 0.932 33 H 0.068 0.932 34 H 0.271 0.729 35 H 0.446 0.554 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.690 -26.864 -1.937 35.218 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.052 4.052 3 N -0.028 5.028 4 N -0.132 5.132 5 C -0.043 4.043 6 N -0.108 5.108 7 N -0.119 5.119 8 C -0.183 4.183 9 S 0.289 5.711 10 C -0.249 4.249 11 C -0.112 4.112 12 C -0.238 4.238 13 S 0.042 5.958 14 C -0.686 4.686 15 H 0.091 0.909 16 C -0.189 4.189 17 N -0.542 5.542 18 Si 0.815 3.185 19 H -0.188 1.188 20 H -0.197 1.197 21 H -0.197 1.197 22 N -0.169 5.169 23 C 0.171 3.829 24 O -0.255 6.255 25 H 0.139 0.861 26 H 0.123 0.877 27 H 0.158 0.842 28 H 0.120 0.880 29 H 0.121 0.879 30 H 0.102 0.898 31 H 0.101 0.899 32 H 0.086 0.914 33 H 0.087 0.913 34 H 0.081 0.919 35 H 0.314 0.686 Dipole moment (debyes) X Y Z Total from point charges -22.473 -25.196 -1.372 33.790 hybrid contribution 2.155 -1.219 -0.368 2.503 sum -20.318 -26.415 -1.741 33.370 Atomic orbital electron populations 1.21241 0.78823 1.07978 1.07239 1.24999 1.02415 0.87369 0.90417 1.76134 0.84433 1.25988 1.16202 1.48300 1.05646 1.07648 1.51611 1.23038 0.91201 0.82159 1.07889 1.74650 1.10049 1.06682 1.19415 1.74974 1.18696 0.98628 1.19555 1.26737 0.84655 0.99554 1.07362 1.85631 1.12193 0.82269 1.91003 1.23770 0.94663 0.98486 1.07941 1.20901 0.95550 0.90163 1.04620 1.23157 0.99496 0.97383 1.03745 1.84573 1.12534 1.01617 1.97051 1.23082 0.91452 0.95382 1.58697 0.90876 1.26033 1.04063 0.94998 0.93833 1.70145 1.36027 1.00029 1.48046 0.84989 0.76754 0.78498 0.78275 1.18816 1.19688 1.19700 1.67415 1.09581 1.24055 1.15897 1.20061 0.85094 0.88487 0.89244 1.84763 1.70256 1.33276 1.37163 0.86062 0.87743 0.84230 0.88040 0.87942 0.89790 0.89868 0.91368 0.91312 0.91946 0.68590 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 0.22 9.98 71.24 0.71 0.93 16 2 C 0.13 1.22 6.93 43.45 0.30 1.52 16 3 N -0.21 -3.90 11.95 -46.59 -0.56 -4.46 16 4 N -0.35 -9.18 4.11 -197.51 -0.81 -9.99 16 5 C 0.32 9.06 9.11 261.21 2.38 11.44 16 6 N -0.26 -8.81 12.27 -59.41 -0.73 -9.54 16 7 N -0.27 -9.03 11.80 -57.01 -0.67 -9.70 16 8 C 0.19 5.54 8.43 179.64 1.51 7.05 16 9 S 0.06 1.46 22.16 -56.49 -1.25 0.21 16 10 C -0.10 -2.55 5.60 71.98 0.40 -2.15 16 11 C -0.07 -2.16 5.22 30.59 0.16 -2.00 16 12 C -0.09 -3.37 5.67 71.98 0.41 -2.96 16 13 S -0.19 -9.71 21.44 -56.49 -1.21 -10.92 16 14 C -0.54 -30.98 9.50 67.95 0.65 -30.33 16 15 H 0.07 4.08 7.80 -2.91 -0.02 4.05 16 16 C 0.02 0.90 5.49 84.86 0.47 1.36 16 17 N -0.91 -54.43 13.22 21.65 0.29 -54.14 16 18 Si 0.99 44.20 29.55 68.60 2.03 46.22 16 19 H -0.26 -11.33 7.11 99.48 0.71 -10.63 16 20 H -0.27 -11.65 7.11 99.48 0.71 -10.94 16 21 H -0.27 -11.67 7.11 99.48 0.71 -10.96 16 22 N -0.44 -9.64 10.51 -310.43 -3.26 -12.90 16 23 C 0.39 4.32 7.75 85.47 0.66 4.99 16 24 O -0.44 -0.77 12.63 -87.65 -1.11 -1.88 16 25 H 0.12 -0.48 8.14 -2.38 -0.02 -0.50 16 26 H 0.10 -0.25 8.14 -2.39 -0.02 -0.27 16 27 H 0.14 -1.34 7.55 -2.39 -0.02 -1.36 16 28 H 0.10 2.64 8.14 -2.39 -0.02 2.62 16 29 H 0.10 2.65 8.14 -2.39 -0.02 2.63 16 30 H 0.08 2.47 8.14 -2.39 -0.02 2.45 16 31 H 0.08 2.46 8.14 -2.38 -0.02 2.44 16 32 H 0.07 2.61 8.14 -2.40 -0.02 2.59 16 33 H 0.07 2.63 8.14 -2.39 -0.02 2.61 16 34 H 0.27 15.10 8.31 -92.71 -0.77 14.33 16 35 H 0.45 -4.54 9.06 -74.06 -0.67 -5.21 16 Total: -1.00 -84.23 342.51 0.84 -83.39 By element: Atomic # 1 Polarization: -6.63 SS G_CDS: 0.48 Total: -6.14 kcal Atomic # 6 Polarization: -17.79 SS G_CDS: 7.65 Total: -10.14 kcal Atomic # 7 Polarization: -94.99 SS G_CDS: -5.75 Total: -100.73 kcal Atomic # 8 Polarization: -0.77 SS G_CDS: -1.11 Total: -1.88 kcal Atomic # 14 Polarization: 44.20 SS G_CDS: 2.03 Total: 46.22 kcal Atomic # 16 Polarization: -8.25 SS G_CDS: -2.46 Total: -10.71 kcal Total: -84.23 0.84 -83.39 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000266692334.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 167.791 kcal (2) G-P(sol) polarization free energy of solvation -84.234 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 83.557 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.844 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.390 kcal (6) G-S(sol) free energy of system = (1) + (5) 84.401 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds