Wall clock time and date at job start Tue Mar 31 2020 14:58:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.37106 * 119.99830 * 2 1 4 4 H 1.07997 * 119.99456 * 202.40290 * 3 2 1 5 5 C 1.38951 * 119.99855 * 22.40351 * 3 2 1 6 6 N 1.31407 * 120.00138 * 11.60733 * 5 3 2 7 7 Si 1.86796 * 119.99919 * 191.60481 * 5 3 2 8 8 H 1.48501 * 109.46949 * 0.02562 * 7 5 3 9 9 H 1.48497 * 109.47369 * 120.00024 * 7 5 3 10 10 H 1.48504 * 109.47430 * 240.00282 * 7 5 3 11 11 C 1.34776 * 120.00071 * 180.02562 * 2 1 3 12 12 O 1.21296 * 119.99603 * 180.02562 * 11 2 1 13 13 C 1.50701 * 120.00191 * 359.97438 * 11 2 1 14 14 S 1.81401 * 109.47088 * 180.02562 * 13 11 2 15 15 C 1.81403 * 102.99720 * 180.02562 * 14 13 11 16 16 C 1.50696 * 109.46931 * 180.02562 * 15 14 13 17 17 O 1.21266 * 120.00294 * 0.02562 * 16 15 14 18 18 C 1.47091 * 120.00005 * 179.97438 * 16 15 14 19 19 C 1.39900 * 120.15733 * 359.72623 * 18 16 15 20 20 C 1.37816 * 119.83795 * 179.81136 * 19 18 16 21 21 C 1.38567 * 120.15937 * 0.44302 * 20 19 18 22 22 Cl 1.73593 * 119.83933 * 179.76756 * 21 20 19 23 23 C 1.38566 * 120.31658 * 359.78436 * 21 20 19 24 24 C 1.37817 * 120.16339 * 0.02562 * 23 21 20 25 25 H 1.09004 * 109.47108 * 272.16132 * 1 2 3 26 26 H 1.08996 * 109.47384 * 32.16047 * 1 2 3 27 27 H 1.09000 * 109.47052 * 152.15947 * 1 2 3 28 28 H 0.96998 * 120.00409 * 179.97438 * 6 5 3 29 29 H 1.09002 * 109.46804 * 60.00018 * 13 11 2 30 30 H 1.09002 * 109.46825 * 300.00188 * 13 11 2 31 31 H 1.08997 * 109.47184 * 60.00062 * 15 14 13 32 32 H 1.09004 * 109.46877 * 299.99694 * 15 14 13 33 33 H 1.08002 * 120.07987 * 0.02562 * 19 18 16 34 34 H 1.08001 * 119.91609 * 180.18488 * 20 19 18 35 35 H 1.08004 * 119.91692 * 179.97438 * 23 21 20 36 36 H 1.07994 * 120.08080 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1505 1.1874 0.0000 4 1 3.1693 1.2226 -0.3565 5 6 1.5343 2.3453 0.4586 6 7 0.3896 2.2708 1.0996 7 14 2.3333 4.0079 0.1641 8 1 3.6073 3.8207 -0.5756 9 1 1.4185 4.8621 -0.6350 10 1 2.6091 4.6626 1.4682 11 6 2.1389 -1.1672 -0.0005 12 8 3.3519 -1.1671 -0.0001 13 6 1.3855 -2.4723 -0.0005 14 16 2.5643 -3.8511 -0.0005 15 6 1.4860 -5.3098 -0.0013 16 6 2.3300 -6.5583 -0.0008 17 8 3.5396 -6.4725 0.0006 18 6 1.6866 -7.8810 -0.0007 19 6 0.2914 -7.9839 0.0047 20 6 -0.3046 -9.2265 0.0008 21 6 0.4747 -10.3723 0.0009 22 17 -0.2847 -11.9333 0.0021 23 6 1.8571 -10.2780 0.0004 24 6 2.4669 -9.0421 0.0003 25 1 -0.3633 0.0388 1.0270 26 1 -0.3634 0.8699 -0.5470 27 1 -0.3633 -0.9087 -0.4799 28 1 -0.0404 3.0790 1.4201 29 1 0.7585 -2.5298 -0.8903 30 1 0.7591 -2.5302 0.8897 31 1 0.8572 -5.2963 -0.8915 32 1 0.8566 -5.2968 0.8885 33 1 -0.3172 -7.0916 0.0083 34 1 -1.3816 -9.3074 0.0019 35 1 2.4582 -11.1753 0.0008 36 1 3.5444 -8.9702 0.0003 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000266969721.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:58:51 Heat of formation + Delta-G solvation = -35.358691 kcal Electronic energy + Delta-G solvation = -21282.237218 eV Core-core repulsion = 17691.523400 eV Total energy + Delta-G solvation = -3590.713818 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 327.048 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.39122 -38.66085 -38.38644 -36.91351 -34.73388 -32.38554 -31.78001 -31.54636 -29.79728 -29.11852 -26.19760 -24.34656 -24.14268 -23.18773 -20.47711 -19.23108 -17.96399 -16.95284 -16.53496 -16.50747 -16.10131 -15.61631 -15.58105 -15.06961 -14.82451 -14.48290 -14.26292 -14.10900 -13.95060 -13.93252 -12.99009 -12.83012 -12.50025 -12.39676 -12.26567 -12.05831 -11.91161 -11.59063 -11.35873 -11.35491 -11.23236 -10.94487 -10.34075 -10.31719 -10.11083 -9.64636 -9.56364 -9.28175 -9.08371 -8.54351 -7.75905 -7.30824 -6.36688 -3.93102 0.05443 0.74516 1.54695 1.63505 1.96384 2.80636 3.12672 3.18612 3.23841 3.31446 3.62219 3.78231 4.10455 4.17805 4.30583 4.66523 4.69137 4.79392 4.89369 4.90785 5.05637 5.05989 5.12972 5.38391 5.54168 5.56608 5.58702 5.63035 5.79429 5.80544 6.14014 6.22555 6.79205 7.13929 7.19954 7.52883 8.04835 8.41446 9.12023 9.33997 9.88424 10.67283 Molecular weight = 327.05amu Principal moments of inertia in cm(-1) A = 0.038747 B = 0.001931 C = 0.001848 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 722.465299 B =14496.913286 C =15148.102541 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.111 3.889 2 N -0.442 5.442 3 C -0.303 4.303 4 H 0.101 0.899 5 C 0.030 3.970 6 N -0.884 5.884 7 Si 0.929 3.071 8 H -0.267 1.267 9 H -0.281 1.281 10 H -0.281 1.281 11 C 0.460 3.540 12 O -0.569 6.569 13 C -0.121 4.121 14 S -0.128 6.128 15 C -0.180 4.180 16 C 0.413 3.587 17 O -0.419 6.419 18 C -0.153 4.153 19 C -0.060 4.060 20 C -0.123 4.123 21 C -0.009 4.009 22 Cl -0.064 7.064 23 C -0.122 4.122 24 C -0.048 4.048 25 H 0.059 0.941 26 H 0.071 0.929 27 H 0.025 0.975 28 H 0.267 0.733 29 H 0.094 0.906 30 H 0.095 0.905 31 H 0.113 0.887 32 H 0.114 0.886 33 H 0.144 0.856 34 H 0.141 0.859 35 H 0.141 0.859 36 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.491 -24.374 -2.148 25.590 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.033 4.033 2 N -0.161 5.161 3 C -0.431 4.431 4 H 0.119 0.881 5 C -0.173 4.173 6 N -0.523 5.523 7 Si 0.755 3.245 8 H -0.191 1.191 9 H -0.206 1.206 10 H -0.207 1.207 11 C 0.246 3.754 12 O -0.453 6.453 13 C -0.272 4.272 14 S 0.098 5.902 15 C -0.328 4.328 16 C 0.287 3.713 17 O -0.291 6.291 18 C -0.156 4.156 19 C -0.079 4.079 20 C -0.141 4.141 21 C -0.036 4.036 22 Cl -0.035 7.035 23 C -0.141 4.141 24 C -0.066 4.066 25 H 0.078 0.922 26 H 0.090 0.910 27 H 0.043 0.957 28 H 0.078 0.922 29 H 0.112 0.888 30 H 0.114 0.886 31 H 0.131 0.869 32 H 0.132 0.868 33 H 0.162 0.838 34 H 0.159 0.841 35 H 0.159 0.841 36 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -5.352 -24.244 -2.065 24.914 hybrid contribution -1.727 0.687 0.009 1.859 sum -7.079 -23.557 -2.056 24.683 Atomic orbital electron populations 1.21545 0.81049 0.98826 1.01840 1.43517 1.05547 1.04403 1.62671 1.19742 0.99631 0.83425 1.40351 0.88116 1.25365 0.96523 1.00183 0.95274 1.69995 1.17390 1.29301 1.35630 0.85819 0.79307 0.81149 0.78208 1.19121 1.20641 1.20670 1.19123 0.87809 0.83635 0.84841 1.90575 1.13342 1.86239 1.55135 1.23627 1.01302 0.96957 1.05347 1.88096 1.09560 0.94586 1.97957 1.24056 1.03976 0.97836 1.06977 1.21644 0.88997 0.88267 0.72430 1.90605 1.15946 1.88659 1.33928 1.20554 0.94401 0.94777 1.05863 1.21480 0.93507 0.97848 0.95043 1.21063 1.00737 0.90651 1.01663 1.21295 0.93322 0.86992 1.01957 1.98397 1.81829 1.26679 1.96577 1.21074 0.92532 0.98794 1.01679 1.21428 1.01164 0.90398 0.93643 0.92221 0.91031 0.95688 0.92238 0.88798 0.88612 0.86857 0.86812 0.83839 0.84097 0.84139 0.83630 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 2.39 8.52 59.85 0.51 2.90 16 2 N -0.44 -11.24 3.02 -122.19 -0.37 -11.61 16 3 C -0.30 -8.45 9.29 -14.93 -0.14 -8.59 16 4 H 0.10 2.96 7.41 -52.49 -0.39 2.57 16 5 C 0.03 0.78 5.11 -17.47 -0.09 0.69 16 6 N -0.88 -23.20 10.62 55.50 0.59 -22.61 16 7 Si 0.93 20.68 29.57 -169.99 -5.03 15.66 16 8 H -0.27 -5.98 7.11 56.52 0.40 -5.58 16 9 H -0.28 -6.07 7.11 56.52 0.40 -5.66 16 10 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 11 C 0.46 11.26 7.65 -10.99 -0.08 11.18 16 12 O -0.57 -16.21 15.56 5.54 0.09 -16.12 16 13 C -0.12 -2.17 4.95 36.01 0.18 -1.99 16 14 S -0.13 -2.28 20.01 -107.50 -2.15 -4.43 16 15 C -0.18 -2.00 5.03 36.00 0.18 -1.82 16 16 C 0.41 4.88 7.13 -30.72 -0.22 4.66 16 17 O -0.42 -6.55 15.86 5.57 0.09 -6.46 16 18 C -0.15 -1.39 5.87 -105.06 -0.62 -2.00 16 19 C -0.06 -0.41 9.47 -39.11 -0.37 -0.78 16 20 C -0.12 -0.79 9.81 -39.61 -0.39 -1.17 16 21 C -0.01 -0.06 6.33 -39.34 -0.25 -0.31 16 22 Cl -0.06 -0.43 28.95 -51.86 -1.50 -1.94 16 23 C -0.12 -0.87 9.81 -39.61 -0.39 -1.26 16 24 C -0.05 -0.41 9.60 -39.12 -0.38 -0.78 16 25 H 0.06 1.33 7.54 -51.93 -0.39 0.93 16 26 H 0.07 1.62 7.06 -51.93 -0.37 1.26 16 27 H 0.02 0.42 6.36 -51.93 -0.33 0.09 16 28 H 0.27 6.62 8.31 -40.82 -0.34 6.28 16 29 H 0.09 1.43 7.40 -51.92 -0.38 1.05 16 30 H 0.10 1.52 8.11 -51.92 -0.42 1.10 16 31 H 0.11 0.96 8.09 -51.93 -0.42 0.54 16 32 H 0.11 0.99 8.08 -51.92 -0.42 0.57 16 33 H 0.14 0.64 7.05 -52.49 -0.37 0.27 16 34 H 0.14 0.63 8.06 -52.49 -0.42 0.21 16 35 H 0.14 0.75 8.06 -52.48 -0.42 0.33 16 36 H 0.15 1.20 7.65 -52.49 -0.40 0.80 16 LS Contribution 342.63 15.07 5.16 5.16 Total: -1.00 -33.64 342.63 -9.04 -42.69 By element: Atomic # 1 Polarization: 2.80 SS G_CDS: -3.87 Total: -1.08 kcal Atomic # 6 Polarization: 2.78 SS G_CDS: -2.05 Total: 0.73 kcal Atomic # 7 Polarization: -34.44 SS G_CDS: 0.22 Total: -34.22 kcal Atomic # 8 Polarization: -22.75 SS G_CDS: 0.17 Total: -22.58 kcal Atomic # 14 Polarization: 20.68 SS G_CDS: -5.03 Total: 15.66 kcal Atomic # 16 Polarization: -2.28 SS G_CDS: -2.15 Total: -4.43 kcal Atomic # 17 Polarization: -0.43 SS G_CDS: -1.50 Total: -1.94 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -33.64 -9.04 -42.69 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000266969721.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.328 kcal (2) G-P(sol) polarization free energy of solvation -33.643 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.314 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.044 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.687 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.359 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds