Wall clock time and date at job start Tue Mar 31 2020 14:58:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.37106 * 119.99830 * 2 1 4 4 H 1.07997 * 119.99456 * 202.40290 * 3 2 1 5 5 C 1.38951 * 119.99855 * 22.40351 * 3 2 1 6 6 N 1.31407 * 120.00138 * 11.60733 * 5 3 2 7 7 Si 1.86796 * 119.99919 * 191.60481 * 5 3 2 8 8 H 1.48501 * 109.46949 * 0.02562 * 7 5 3 9 9 H 1.48497 * 109.47369 * 120.00024 * 7 5 3 10 10 H 1.48504 * 109.47430 * 240.00282 * 7 5 3 11 11 C 1.34776 * 120.00071 * 180.02562 * 2 1 3 12 12 O 1.21296 * 119.99603 * 180.02562 * 11 2 1 13 13 C 1.50701 * 120.00191 * 359.97438 * 11 2 1 14 14 S 1.81401 * 109.47088 * 180.02562 * 13 11 2 15 15 C 1.81403 * 102.99720 * 180.02562 * 14 13 11 16 16 C 1.50696 * 109.46931 * 180.02562 * 15 14 13 17 17 O 1.21266 * 120.00294 * 0.02562 * 16 15 14 18 18 C 1.47091 * 120.00005 * 179.97438 * 16 15 14 19 19 C 1.39900 * 120.15733 * 359.72623 * 18 16 15 20 20 C 1.37816 * 119.83795 * 179.81136 * 19 18 16 21 21 C 1.38567 * 120.15937 * 0.44302 * 20 19 18 22 22 Cl 1.73593 * 119.83933 * 179.76756 * 21 20 19 23 23 C 1.38566 * 120.31658 * 359.78436 * 21 20 19 24 24 C 1.37817 * 120.16339 * 0.02562 * 23 21 20 25 25 H 1.09004 * 109.47108 * 272.16132 * 1 2 3 26 26 H 1.08996 * 109.47384 * 32.16047 * 1 2 3 27 27 H 1.09000 * 109.47052 * 152.15947 * 1 2 3 28 28 H 0.96998 * 120.00409 * 179.97438 * 6 5 3 29 29 H 1.09002 * 109.46804 * 60.00018 * 13 11 2 30 30 H 1.09002 * 109.46825 * 300.00188 * 13 11 2 31 31 H 1.08997 * 109.47184 * 60.00062 * 15 14 13 32 32 H 1.09004 * 109.46877 * 299.99694 * 15 14 13 33 33 H 1.08002 * 120.07987 * 0.02562 * 19 18 16 34 34 H 1.08001 * 119.91609 * 180.18488 * 20 19 18 35 35 H 1.08004 * 119.91692 * 179.97438 * 23 21 20 36 36 H 1.07994 * 120.08080 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1505 1.1874 0.0000 4 1 3.1693 1.2226 -0.3565 5 6 1.5343 2.3453 0.4586 6 7 0.3896 2.2708 1.0996 7 14 2.3333 4.0079 0.1641 8 1 3.6073 3.8207 -0.5756 9 1 1.4185 4.8621 -0.6350 10 1 2.6091 4.6626 1.4682 11 6 2.1389 -1.1672 -0.0005 12 8 3.3519 -1.1671 -0.0001 13 6 1.3855 -2.4723 -0.0005 14 16 2.5643 -3.8511 -0.0005 15 6 1.4860 -5.3098 -0.0013 16 6 2.3300 -6.5583 -0.0008 17 8 3.5396 -6.4725 0.0006 18 6 1.6866 -7.8810 -0.0007 19 6 0.2914 -7.9839 0.0047 20 6 -0.3046 -9.2265 0.0008 21 6 0.4747 -10.3723 0.0009 22 17 -0.2847 -11.9333 0.0021 23 6 1.8571 -10.2780 0.0004 24 6 2.4669 -9.0421 0.0003 25 1 -0.3633 0.0388 1.0270 26 1 -0.3634 0.8699 -0.5470 27 1 -0.3633 -0.9087 -0.4799 28 1 -0.0404 3.0790 1.4201 29 1 0.7585 -2.5298 -0.8903 30 1 0.7591 -2.5302 0.8897 31 1 0.8572 -5.2963 -0.8915 32 1 0.8566 -5.2968 0.8885 33 1 -0.3172 -7.0916 0.0083 34 1 -1.3816 -9.3074 0.0019 35 1 2.4582 -11.1753 0.0008 36 1 3.5444 -8.9702 0.0003 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000266969721.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:58:51 Heat of formation + Delta-G solvation = -55.322537 kcal Electronic energy + Delta-G solvation = -21283.102915 eV Core-core repulsion = 17691.523400 eV Total energy + Delta-G solvation = -3591.579515 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 327.048 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.13965 -40.29946 -39.38961 -37.46340 -36.70422 -33.77225 -33.09952 -32.11053 -31.01803 -30.28767 -28.01367 -26.15957 -24.91419 -23.73526 -21.48148 -20.80208 -18.92992 -18.62116 -17.99008 -17.56266 -17.21758 -16.73439 -16.50471 -16.46075 -16.19256 -15.83521 -15.62459 -15.09089 -14.61032 -14.57311 -14.34941 -14.24725 -13.75862 -13.63792 -13.37341 -13.24690 -13.11243 -13.03197 -12.67616 -12.58676 -12.50625 -12.32939 -12.11786 -11.87271 -11.05373 -11.01286 -10.77944 -10.48833 -10.16660 -9.87403 -9.72804 -8.65959 -8.35956 -6.01121 -0.59780 0.22538 0.42521 1.01654 1.20314 1.34572 1.40838 1.54468 1.60903 1.95471 2.26993 2.59298 2.79413 3.03025 3.06459 3.65290 3.81599 3.94244 4.02893 4.14659 4.16123 4.17938 4.29001 4.33679 4.36516 4.54895 4.65977 4.89652 5.02674 5.04927 5.10265 5.22506 5.39698 5.43429 5.60633 6.04925 6.36118 6.44094 7.13248 7.41044 7.96639 8.65815 Molecular weight = 327.05amu Principal moments of inertia in cm(-1) A = 0.038747 B = 0.001931 C = 0.001848 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 722.465299 B =14496.913286 C =15148.102541 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.119 3.881 2 N -0.458 5.458 3 C -0.343 4.343 4 H 0.068 0.932 5 C -0.001 4.001 6 N -0.893 5.893 7 Si 0.989 3.011 8 H -0.277 1.277 9 H -0.263 1.263 10 H -0.275 1.275 11 C 0.445 3.555 12 O -0.622 6.622 13 C -0.095 4.095 14 S -0.222 6.222 15 C -0.155 4.155 16 C 0.415 3.585 17 O -0.473 6.473 18 C -0.169 4.169 19 C -0.048 4.048 20 C -0.121 4.121 21 C -0.012 4.012 22 Cl -0.061 7.061 23 C -0.125 4.125 24 C -0.059 4.059 25 H 0.050 0.950 26 H 0.054 0.946 27 H 0.075 0.925 28 H 0.275 0.725 29 H 0.129 0.871 30 H 0.123 0.877 31 H 0.151 0.849 32 H 0.149 0.851 33 H 0.175 0.825 34 H 0.165 0.835 35 H 0.153 0.847 36 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.762 -25.474 -2.268 27.746 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.024 4.024 2 N -0.177 5.177 3 C -0.472 4.472 4 H 0.086 0.914 5 C -0.203 4.203 6 N -0.532 5.532 7 Si 0.813 3.187 8 H -0.202 1.202 9 H -0.187 1.187 10 H -0.201 1.201 11 C 0.234 3.766 12 O -0.509 6.509 13 C -0.246 4.246 14 S 0.004 5.996 15 C -0.303 4.303 16 C 0.293 3.707 17 O -0.349 6.349 18 C -0.172 4.172 19 C -0.066 4.066 20 C -0.140 4.140 21 C -0.039 4.039 22 Cl -0.032 7.032 23 C -0.144 4.144 24 C -0.078 4.078 25 H 0.068 0.932 26 H 0.073 0.927 27 H 0.094 0.906 28 H 0.084 0.916 29 H 0.147 0.853 30 H 0.141 0.859 31 H 0.169 0.831 32 H 0.167 0.833 33 H 0.192 0.808 34 H 0.183 0.817 35 H 0.171 0.829 36 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -8.686 -25.350 -2.181 26.885 hybrid contribution -0.763 0.874 0.066 1.162 sum -9.449 -24.476 -2.115 26.322 Atomic orbital electron populations 1.21545 0.78732 1.00598 1.01550 1.43791 1.07068 1.04173 1.62660 1.19626 0.99225 0.85646 1.42673 0.91359 1.26058 0.97027 1.02730 0.94455 1.70050 1.17687 1.30460 1.35000 0.84943 0.78292 0.77256 0.78251 1.20152 1.18727 1.20069 1.20194 0.87729 0.85571 0.83126 1.90539 1.16022 1.87462 1.56904 1.23348 1.00289 0.92809 1.08168 1.88498 1.13963 0.98794 1.98320 1.24157 1.02658 0.93062 1.10429 1.22080 0.88423 0.89590 0.70586 1.90605 1.18071 1.89323 1.36863 1.20397 0.95525 0.93164 1.08064 1.21767 0.92377 0.99205 0.93296 1.21374 1.01928 0.90068 1.00596 1.21490 0.93417 0.87561 1.01436 1.98403 1.81661 1.26596 1.96501 1.21185 0.92986 0.98724 1.01476 1.21453 1.00996 0.91072 0.94244 0.93153 0.92733 0.90647 0.91560 0.85261 0.85928 0.83082 0.83297 0.80788 0.81701 0.82905 0.84595 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.12 4.90 8.52 127.77 1.09 5.99 16 2 N -0.46 -23.41 3.02 -658.88 -1.99 -25.40 16 3 C -0.34 -19.69 9.29 84.04 0.78 -18.91 16 4 H 0.07 4.25 7.41 -2.91 -0.02 4.23 16 5 C 0.00 -0.03 5.11 84.93 0.43 0.40 16 6 N -0.89 -46.40 10.62 21.66 0.23 -46.17 16 7 Si 0.99 42.58 29.57 68.60 2.03 44.60 16 8 H -0.28 -12.25 7.11 99.48 0.71 -11.54 16 9 H -0.26 -10.51 7.11 99.48 0.71 -9.80 16 10 H -0.28 -11.56 7.11 99.48 0.71 -10.85 16 11 C 0.45 21.99 7.65 87.66 0.67 22.66 16 12 O -0.62 -36.97 15.56 -3.08 -0.05 -37.02 16 13 C -0.10 -3.21 4.95 71.24 0.35 -2.85 16 14 S -0.22 -7.76 20.01 -56.49 -1.13 -8.89 16 15 C -0.16 -2.93 5.03 71.23 0.36 -2.57 16 16 C 0.42 9.29 7.13 28.01 0.20 9.49 16 17 O -0.47 -15.21 15.86 -2.99 -0.05 -15.25 16 18 C -0.17 -2.72 5.87 -20.15 -0.12 -2.84 16 19 C -0.05 -0.46 9.47 22.57 0.21 -0.25 16 20 C -0.12 -1.10 9.81 22.25 0.22 -0.88 16 21 C -0.01 -0.14 6.33 22.43 0.14 0.00 16 22 Cl -0.06 -0.69 28.95 -2.72 -0.08 -0.77 16 23 C -0.13 -1.61 9.81 22.25 0.22 -1.39 16 24 C -0.06 -0.96 9.60 22.57 0.22 -0.75 16 25 H 0.05 2.16 7.54 -2.38 -0.02 2.14 16 26 H 0.05 2.41 7.06 -2.39 -0.02 2.39 16 27 H 0.08 2.30 6.36 -2.39 -0.02 2.28 16 28 H 0.27 13.28 8.31 -92.71 -0.77 12.51 16 29 H 0.13 3.40 7.40 -2.39 -0.02 3.38 16 30 H 0.12 3.46 8.11 -2.39 -0.02 3.44 16 31 H 0.15 1.78 8.09 -2.39 -0.02 1.76 16 32 H 0.15 1.84 8.08 -2.39 -0.02 1.82 16 33 H 0.17 0.53 7.05 -2.91 -0.02 0.51 16 34 H 0.17 0.71 8.06 -2.91 -0.02 0.69 16 35 H 0.15 1.46 8.06 -2.91 -0.02 1.44 16 36 H 0.14 2.39 7.65 -2.91 -0.02 2.37 16 Total: -1.00 -78.89 342.63 4.85 -74.04 By element: Atomic # 1 Polarization: 5.65 SS G_CDS: 1.11 Total: 6.76 kcal Atomic # 6 Polarization: 3.32 SS G_CDS: 4.78 Total: 8.10 kcal Atomic # 7 Polarization: -69.81 SS G_CDS: -1.76 Total: -71.57 kcal Atomic # 8 Polarization: -52.18 SS G_CDS: -0.10 Total: -52.28 kcal Atomic # 14 Polarization: 42.58 SS G_CDS: 2.03 Total: 44.60 kcal Atomic # 16 Polarization: -7.76 SS G_CDS: -1.13 Total: -8.89 kcal Atomic # 17 Polarization: -0.69 SS G_CDS: -0.08 Total: -0.77 kcal Total: -78.89 4.85 -74.04 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000266969721.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.718 kcal (2) G-P(sol) polarization free energy of solvation -78.895 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.177 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.854 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.041 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.323 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds