Wall clock time and date at job start Tue Mar 31 2020 15:23:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31556 * 1 3 3 Si 1.86795 * 119.99959 * 2 1 4 4 H 1.48499 * 109.47264 * 180.02562 * 3 2 1 5 5 H 1.48494 * 109.47375 * 300.00329 * 3 2 1 6 6 H 1.48506 * 109.47301 * 60.00327 * 3 2 1 7 7 C 1.38663 * 120.00220 * 180.02562 * 2 1 3 8 8 H 1.07993 * 119.99731 * 179.97438 * 7 2 1 9 9 O 1.34828 * 119.99751 * 359.97438 * 7 2 1 10 10 C 1.35750 * 117.00075 * 174.94575 * 9 7 2 11 11 C 1.38874 * 120.06878 * 185.26035 * 10 9 7 12 12 C 1.38106 * 119.92542 * 179.72264 * 11 10 9 13 13 C 1.38301 * 120.06995 * 0.57427 * 12 11 10 14 14 C 1.50698 * 119.92966 * 179.70327 * 13 12 11 15 15 N 1.46508 * 109.46930 * 269.97659 * 14 13 12 16 16 C 1.38702 * 119.99740 * 179.97438 * 15 14 13 17 17 N 1.30237 * 126.16952 * 0.03240 * 16 15 14 18 18 N 1.26099 * 117.62111 * 179.97438 * 17 16 15 19 19 C 1.29320 * 117.96915 * 359.97438 * 18 17 16 20 20 C 1.50700 * 126.06601 * 180.02562 * 19 18 17 21 21 F 1.39901 * 109.47280 * 29.97712 * 20 19 18 22 22 F 1.39896 * 109.47295 * 149.97917 * 20 19 18 23 23 S 1.76480 * 107.86849 * 359.76292 * 19 18 17 24 24 C 1.38297 * 120.13831 * 359.68148 * 13 12 11 25 25 C 1.38101 * 120.07230 * 0.04164 * 24 13 12 26 26 H 0.96996 * 120.00178 * 359.97438 * 1 2 3 27 27 H 1.07996 * 120.03745 * 0.02562 * 11 10 9 28 28 H 1.07997 * 119.96326 * 180.27708 * 12 11 10 29 29 H 1.09003 * 109.47622 * 29.97563 * 14 13 12 30 30 H 1.09004 * 109.47221 * 149.98114 * 14 13 12 31 31 H 0.96994 * 120.00085 * 0.02562 * 15 14 13 32 32 H 1.08998 * 109.47605 * 269.97879 * 20 19 18 33 33 H 1.07999 * 119.96698 * 180.02562 * 24 13 12 34 34 H 1.07992 * 120.03608 * 179.97438 * 25 24 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2495 1.6177 0.0000 4 1 3.7095 1.3464 -0.0006 5 1 1.8908 2.3964 -1.2124 6 1 1.8908 2.3964 1.2126 7 6 2.0089 -1.2008 -0.0005 8 1 3.0889 -1.2007 -0.0010 9 8 1.3348 -2.3685 -0.0005 10 6 2.0700 -3.5046 -0.1076 11 6 1.4365 -4.7349 -0.2242 12 6 2.1874 -5.8884 -0.3387 13 6 3.5686 -5.8202 -0.3255 14 6 4.3848 -7.0815 -0.4440 15 7 4.6432 -7.6233 0.8925 16 6 5.3802 -8.7893 1.0375 17 7 5.8976 -9.4965 0.0739 18 7 6.5412 -10.5336 0.3904 19 6 6.6441 -10.8238 1.6464 20 6 7.3677 -12.0119 2.2261 21 9 8.4325 -12.3632 1.3894 22 9 7.8594 -11.6852 3.4944 23 16 5.7935 -9.5775 2.5617 24 6 4.2024 -4.5970 -0.2043 25 6 3.4573 -3.4394 -0.0951 26 1 -0.4850 0.8400 0.0004 27 1 0.3579 -4.7892 -0.2301 28 1 1.6954 -6.8451 -0.4339 29 1 3.8358 -7.8156 -1.0337 30 1 5.3321 -6.8566 -0.9342 31 1 4.2983 -7.1670 1.6758 32 1 6.6784 -12.8522 2.3090 33 1 5.2812 -4.5470 -0.1947 34 1 3.9527 -2.4846 0.0000 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000269351644.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:23:05 Heat of formation + Delta-G solvation = -31.842984 kcal Electronic energy + Delta-G solvation = -23079.426651 eV Core-core repulsion = 18969.361357 eV Total energy + Delta-G solvation = -4110.065294 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 327.059 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -49.42635 -47.45175 -41.16392 -39.35412 -37.51428 -35.88684 -32.58001 -31.90472 -30.44112 -30.17544 -27.57708 -26.13408 -25.18523 -24.17523 -22.20243 -21.07464 -20.36675 -19.67101 -18.21348 -18.06818 -17.95668 -17.49315 -17.16624 -16.50330 -15.91730 -15.09028 -14.95270 -14.65964 -14.31596 -14.28663 -13.86248 -13.81728 -13.79007 -13.76688 -13.44857 -13.25609 -12.92634 -12.50543 -12.14188 -11.85038 -11.51229 -11.15944 -11.06183 -10.94349 -10.79376 -10.73576 -10.55162 -10.38286 -9.95486 -9.54327 -9.02691 -8.44698 -8.37850 -7.48899 -6.63652 -4.22361 0.21689 0.26993 0.88560 1.87469 1.99681 2.38196 2.77447 3.01457 3.03514 3.09103 3.19069 3.61976 3.81660 4.20731 4.31387 4.38662 4.61126 4.88744 4.92657 5.00827 5.06946 5.20355 5.49824 5.61929 5.64036 5.98936 6.19891 6.37855 6.46083 6.65900 6.78048 6.90514 7.02527 7.12253 7.22866 7.56869 7.80727 8.41299 8.81456 9.47634 10.53449 Molecular weight = 327.06amu Principal moments of inertia in cm(-1) A = 0.033523 B = 0.001932 C = 0.001900 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 835.057971 B =14491.062151 C =14732.636476 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.856 5.856 2 C 0.041 3.959 3 Si 0.944 3.056 4 H -0.266 1.266 5 H -0.274 1.274 6 H -0.274 1.274 7 C -0.394 4.394 8 H 0.095 0.905 9 O -0.169 6.169 10 C 0.163 3.837 11 C -0.196 4.196 12 C -0.050 4.050 13 C -0.226 4.226 14 C 0.186 3.814 15 N -0.657 5.657 16 C 0.319 3.681 17 N -0.345 5.345 18 N -0.170 5.170 19 C -0.123 4.123 20 C 0.375 3.625 21 F -0.181 7.181 22 F -0.190 7.190 23 S 0.075 5.925 24 C -0.045 4.045 25 C -0.238 4.238 26 H 0.272 0.728 27 H 0.120 0.880 28 H 0.114 0.886 29 H 0.076 0.924 30 H 0.075 0.925 31 H 0.421 0.579 32 H 0.140 0.860 33 H 0.109 0.891 34 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.200 -18.574 5.388 21.864 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.489 5.489 2 C -0.165 4.165 3 Si 0.768 3.232 4 H -0.190 1.190 5 H -0.200 1.200 6 H -0.200 1.200 7 C -0.470 4.470 8 H 0.113 0.887 9 O -0.071 6.071 10 C 0.108 3.892 11 C -0.215 4.215 12 C -0.069 4.069 13 C -0.228 4.228 14 C 0.063 3.937 15 N -0.294 5.294 16 C -0.053 4.053 17 N -0.196 5.196 18 N -0.008 5.008 19 C -0.409 4.409 20 C 0.317 3.683 21 F -0.162 7.162 22 F -0.172 7.172 23 S 0.312 5.688 24 C -0.064 4.064 25 C -0.257 4.257 26 H 0.082 0.918 27 H 0.138 0.862 28 H 0.132 0.868 29 H 0.094 0.906 30 H 0.093 0.907 31 H 0.260 0.740 32 H 0.157 0.843 33 H 0.127 0.873 34 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 9.783 -18.254 4.940 21.291 hybrid contribution 0.414 1.196 0.359 1.315 sum 10.197 -17.058 5.298 20.568 Atomic orbital electron populations 1.70038 1.06055 1.27988 1.44843 1.25358 0.95897 0.99058 0.96163 0.85604 0.79155 0.80013 0.78438 1.18983 1.19955 1.19978 1.21435 0.91956 0.80607 1.53023 0.88733 1.83976 1.34646 1.11647 1.76830 1.19462 0.90329 0.88061 0.91365 1.20219 0.99776 0.90225 1.11295 1.20536 0.92640 0.96948 0.96743 1.19079 0.93517 0.93067 1.17098 1.20289 0.99353 0.93049 0.81025 1.44913 1.52550 1.20390 1.11500 1.27217 0.93976 0.93043 0.91034 1.71515 1.18171 1.04310 1.25626 1.70614 1.08578 1.07991 1.13586 1.29578 1.12771 1.05144 0.93396 1.19357 0.83894 0.91978 0.73077 1.93067 1.58986 1.92376 1.71755 1.93055 1.89429 1.94108 1.40575 1.85927 1.53033 1.21643 1.08191 1.20654 0.98445 0.91629 0.95714 1.21168 0.93763 0.99023 1.11774 0.91765 0.86220 0.86844 0.90621 0.90685 0.73991 0.84346 0.87281 0.85270 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -23.91 13.67 55.48 0.76 -23.15 16 2 C 0.04 1.06 5.49 -17.51 -0.10 0.97 16 3 Si 0.94 19.47 29.55 -169.99 -5.02 14.44 16 4 H -0.27 -5.24 7.11 56.52 0.40 -4.84 16 5 H -0.27 -5.57 7.11 56.52 0.40 -5.17 16 6 H -0.27 -5.55 7.11 56.52 0.40 -5.15 16 7 C -0.39 -10.37 9.49 30.89 0.29 -10.07 16 8 H 0.10 2.29 5.20 -52.49 -0.27 2.01 16 9 O -0.17 -4.51 9.76 0.05 0.00 -4.51 16 10 C 0.16 3.60 6.65 -39.11 -0.26 3.34 16 11 C -0.20 -3.69 9.99 -39.39 -0.39 -4.09 16 12 C -0.05 -0.76 9.69 -39.61 -0.38 -1.14 16 13 C -0.23 -3.23 5.25 -104.58 -0.55 -3.78 16 14 C 0.19 2.22 6.13 -5.19 -0.03 2.18 16 15 N -0.66 -7.10 5.71 -61.80 -0.35 -7.45 16 16 C 0.32 3.73 8.51 -87.14 -0.74 2.98 16 17 N -0.34 -4.77 11.24 31.00 0.35 -4.42 16 18 N -0.17 -2.28 11.48 33.57 0.39 -1.90 16 19 C -0.12 -1.31 7.36 -13.34 -0.10 -1.41 16 20 C 0.38 2.98 5.86 36.01 0.21 3.19 16 21 F -0.18 -1.82 17.27 2.25 0.04 -1.78 16 22 F -0.19 -1.65 17.13 2.25 0.04 -1.61 16 23 S 0.08 0.72 23.31 -107.50 -2.51 -1.78 16 24 C -0.05 -0.72 9.69 -39.61 -0.38 -1.11 16 25 C -0.24 -4.64 9.17 -39.39 -0.36 -5.01 16 26 H 0.27 6.95 8.31 -40.82 -0.34 6.61 16 27 H 0.12 2.20 8.06 -52.49 -0.42 1.78 16 28 H 0.11 1.44 8.06 -52.49 -0.42 1.02 16 29 H 0.08 0.89 8.08 -51.93 -0.42 0.47 16 30 H 0.07 0.91 8.08 -51.93 -0.42 0.49 16 31 H 0.42 4.03 8.59 -40.82 -0.35 3.68 16 32 H 0.14 0.53 8.14 -51.93 -0.42 0.10 16 33 H 0.11 1.49 8.06 -52.49 -0.42 1.07 16 34 H 0.13 2.56 5.64 -52.49 -0.30 2.26 16 LS Contribution 329.95 15.07 4.97 4.97 Total: -1.00 -30.09 329.95 -6.72 -36.81 By element: Atomic # 1 Polarization: 6.91 SS G_CDS: -2.59 Total: 4.33 kcal Atomic # 6 Polarization: -11.15 SS G_CDS: -2.80 Total: -13.95 kcal Atomic # 7 Polarization: -38.06 SS G_CDS: 1.14 Total: -36.92 kcal Atomic # 8 Polarization: -4.51 SS G_CDS: 0.00 Total: -4.51 kcal Atomic # 9 Polarization: -3.47 SS G_CDS: 0.08 Total: -3.39 kcal Atomic # 14 Polarization: 19.47 SS G_CDS: -5.02 Total: 14.44 kcal Atomic # 16 Polarization: 0.72 SS G_CDS: -2.51 Total: -1.78 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -30.09 -6.72 -36.81 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000269351644.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.967 kcal (2) G-P(sol) polarization free energy of solvation -30.090 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.123 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.720 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.810 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.843 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds