Wall clock time and date at job start Tue Mar 31 2020 15:23:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31556 * 1 3 3 Si 1.86795 * 119.99959 * 2 1 4 4 H 1.48499 * 109.47264 * 180.02562 * 3 2 1 5 5 H 1.48494 * 109.47375 * 300.00329 * 3 2 1 6 6 H 1.48506 * 109.47301 * 60.00327 * 3 2 1 7 7 C 1.38663 * 120.00220 * 180.02562 * 2 1 3 8 8 H 1.07993 * 119.99731 * 179.97438 * 7 2 1 9 9 O 1.34828 * 119.99751 * 359.97438 * 7 2 1 10 10 C 1.35750 * 117.00075 * 174.94575 * 9 7 2 11 11 C 1.38874 * 120.06878 * 185.26035 * 10 9 7 12 12 C 1.38106 * 119.92542 * 179.72264 * 11 10 9 13 13 C 1.38301 * 120.06995 * 0.57427 * 12 11 10 14 14 C 1.50698 * 119.92966 * 179.70327 * 13 12 11 15 15 N 1.46508 * 109.46930 * 269.97659 * 14 13 12 16 16 C 1.38702 * 119.99740 * 179.97438 * 15 14 13 17 17 N 1.30237 * 126.16952 * 0.03240 * 16 15 14 18 18 N 1.26099 * 117.62111 * 179.97438 * 17 16 15 19 19 C 1.29320 * 117.96915 * 359.97438 * 18 17 16 20 20 C 1.50700 * 126.06601 * 180.02562 * 19 18 17 21 21 F 1.39901 * 109.47280 * 29.97712 * 20 19 18 22 22 F 1.39896 * 109.47295 * 149.97917 * 20 19 18 23 23 S 1.76480 * 107.86849 * 359.76292 * 19 18 17 24 24 C 1.38297 * 120.13831 * 359.68148 * 13 12 11 25 25 C 1.38101 * 120.07230 * 0.04164 * 24 13 12 26 26 H 0.96996 * 120.00178 * 359.97438 * 1 2 3 27 27 H 1.07996 * 120.03745 * 0.02562 * 11 10 9 28 28 H 1.07997 * 119.96326 * 180.27708 * 12 11 10 29 29 H 1.09003 * 109.47622 * 29.97563 * 14 13 12 30 30 H 1.09004 * 109.47221 * 149.98114 * 14 13 12 31 31 H 0.96994 * 120.00085 * 0.02562 * 15 14 13 32 32 H 1.08998 * 109.47605 * 269.97879 * 20 19 18 33 33 H 1.07999 * 119.96698 * 180.02562 * 24 13 12 34 34 H 1.07992 * 120.03608 * 179.97438 * 25 24 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2495 1.6177 0.0000 4 1 3.7095 1.3464 -0.0006 5 1 1.8908 2.3964 -1.2124 6 1 1.8908 2.3964 1.2126 7 6 2.0089 -1.2008 -0.0005 8 1 3.0889 -1.2007 -0.0010 9 8 1.3348 -2.3685 -0.0005 10 6 2.0700 -3.5046 -0.1076 11 6 1.4365 -4.7349 -0.2242 12 6 2.1874 -5.8884 -0.3387 13 6 3.5686 -5.8202 -0.3255 14 6 4.3848 -7.0815 -0.4440 15 7 4.6432 -7.6233 0.8925 16 6 5.3802 -8.7893 1.0375 17 7 5.8976 -9.4965 0.0739 18 7 6.5412 -10.5336 0.3904 19 6 6.6441 -10.8238 1.6464 20 6 7.3677 -12.0119 2.2261 21 9 8.4325 -12.3632 1.3894 22 9 7.8594 -11.6852 3.4944 23 16 5.7935 -9.5775 2.5617 24 6 4.2024 -4.5970 -0.2043 25 6 3.4573 -3.4394 -0.0951 26 1 -0.4850 0.8400 0.0004 27 1 0.3579 -4.7892 -0.2301 28 1 1.6954 -6.8451 -0.4339 29 1 3.8358 -7.8156 -1.0337 30 1 5.3321 -6.8566 -0.9342 31 1 4.2983 -7.1670 1.6758 32 1 6.6784 -12.8522 2.3090 33 1 5.2812 -4.5470 -0.1947 34 1 3.9527 -2.4846 0.0000 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000269351644.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:23:05 Heat of formation + Delta-G solvation = -50.891220 kcal Electronic energy + Delta-G solvation = -23080.252644 eV Core-core repulsion = 18969.361357 eV Total energy + Delta-G solvation = -4110.891288 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 327.059 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -50.08955 -48.12888 -42.05906 -40.89249 -38.90143 -37.05995 -34.36851 -32.90588 -31.87339 -31.38444 -28.52014 -27.63571 -26.53437 -25.07764 -23.68805 -22.43256 -21.22084 -20.58891 -19.89910 -18.93152 -18.80900 -18.64938 -18.14627 -17.43040 -16.86837 -16.43972 -16.32446 -16.00953 -15.68739 -15.46968 -15.17132 -14.97339 -14.68526 -14.57672 -14.47992 -14.41383 -14.08307 -13.90890 -13.54684 -13.07846 -12.83285 -12.57217 -12.43075 -12.30597 -12.10964 -11.97269 -11.57154 -11.25856 -11.22226 -10.84777 -10.74908 -9.85163 -9.26857 -9.07620 -8.51197 -6.19320 -0.61203 -0.55096 0.05555 0.50291 0.54676 1.34920 1.41675 1.49110 1.52461 1.90396 2.14762 2.41907 2.80542 3.05815 3.12693 3.44796 3.50605 3.68311 3.79208 3.88369 3.98424 4.13976 4.22457 4.39508 4.53007 4.63735 4.76830 5.00049 5.11457 5.22460 5.43858 5.50990 5.66108 5.68953 5.98780 6.07314 6.12276 6.93847 7.54368 7.72282 8.71585 Molecular weight = 327.06amu Principal moments of inertia in cm(-1) A = 0.033523 B = 0.001932 C = 0.001900 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 835.057971 B =14491.062151 C =14732.636476 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C -0.022 4.022 3 Si 1.018 2.982 4 H -0.251 1.251 5 H -0.270 1.270 6 H -0.269 1.269 7 C -0.413 4.413 8 H 0.104 0.896 9 O -0.228 6.228 10 C 0.125 3.875 11 C -0.206 4.206 12 C -0.038 4.038 13 C -0.188 4.188 14 C 0.194 3.806 15 N -0.654 5.654 16 C 0.307 3.693 17 N -0.372 5.372 18 N -0.205 5.205 19 C -0.120 4.120 20 C 0.372 3.628 21 F -0.194 7.194 22 F -0.194 7.194 23 S 0.126 5.874 24 C -0.041 4.041 25 C -0.246 4.246 26 H 0.273 0.727 27 H 0.116 0.884 28 H 0.151 0.849 29 H 0.086 0.914 30 H 0.080 0.920 31 H 0.428 0.572 32 H 0.188 0.812 33 H 0.140 0.860 34 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.494 -21.174 6.085 25.327 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.555 5.555 2 C -0.220 4.220 3 Si 0.837 3.163 4 H -0.174 1.174 5 H -0.195 1.195 6 H -0.194 1.194 7 C -0.489 4.489 8 H 0.122 0.878 9 O -0.133 6.133 10 C 0.074 3.926 11 C -0.225 4.225 12 C -0.057 4.057 13 C -0.190 4.190 14 C 0.070 3.930 15 N -0.292 5.292 16 C -0.065 4.065 17 N -0.223 5.223 18 N -0.041 5.041 19 C -0.406 4.406 20 C 0.314 3.686 21 F -0.175 7.175 22 F -0.175 7.175 23 S 0.363 5.637 24 C -0.060 4.060 25 C -0.265 4.265 26 H 0.082 0.918 27 H 0.134 0.866 28 H 0.168 0.832 29 H 0.104 0.896 30 H 0.099 0.901 31 H 0.269 0.731 32 H 0.205 0.795 33 H 0.158 0.842 34 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 12.124 -20.923 5.642 24.831 hybrid contribution -0.094 1.494 0.198 1.510 sum 12.029 -19.429 5.840 23.586 Atomic orbital electron populations 1.70176 1.08007 1.28859 1.48456 1.26583 0.96834 1.02775 0.95788 0.84535 0.78305 0.74914 0.78531 1.17405 1.19493 1.19377 1.21867 0.92573 0.81281 1.53154 0.87837 1.83948 1.36129 1.12710 1.80551 1.20037 0.91653 0.87993 0.92924 1.20468 1.00181 0.90418 1.11475 1.20913 0.92996 0.97083 0.94676 1.19398 0.93410 0.93794 1.12371 1.20158 0.99208 0.91693 0.81916 1.44538 1.53020 1.20514 1.11152 1.27198 0.94163 0.93121 0.92050 1.71458 1.18868 1.04887 1.27063 1.70597 1.09980 1.08614 1.14941 1.30192 1.11662 1.05610 0.93181 1.19949 0.83992 0.92354 0.72293 1.93041 1.59844 1.92373 1.72288 1.93050 1.89554 1.94219 1.40708 1.85810 1.51765 1.20188 1.05938 1.20964 0.99871 0.90770 0.94395 1.21252 0.93014 1.00152 1.12103 0.91756 0.86627 0.83169 0.89615 0.90145 0.73150 0.79529 0.84212 0.86255 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -54.53 13.67 21.62 0.30 -54.23 16 2 C -0.02 -1.19 5.49 84.84 0.47 -0.72 16 3 Si 1.02 41.27 29.55 68.60 2.03 43.30 16 4 H -0.25 -9.35 7.11 99.48 0.71 -8.64 16 5 H -0.27 -10.58 7.11 99.48 0.71 -9.88 16 6 H -0.27 -10.49 7.11 99.48 0.71 -9.78 16 7 C -0.41 -22.91 9.49 67.92 0.64 -22.27 16 8 H 0.10 5.24 5.20 -2.91 -0.02 5.23 16 9 O -0.23 -12.96 9.76 -22.72 -0.22 -13.18 16 10 C 0.13 5.71 6.65 22.58 0.15 5.86 16 11 C -0.21 -7.79 9.99 22.39 0.22 -7.57 16 12 C -0.04 -1.06 9.69 22.25 0.22 -0.85 16 13 C -0.19 -4.75 5.25 -19.84 -0.10 -4.86 16 14 C 0.19 3.84 6.13 85.63 0.53 4.37 16 15 N -0.65 -11.73 5.71 -349.45 -2.00 -13.72 16 16 C 0.31 6.19 8.51 179.13 1.52 7.72 16 17 N -0.37 -9.34 11.24 -55.84 -0.63 -9.97 16 18 N -0.20 -5.02 11.48 -47.71 -0.55 -5.57 16 19 C -0.12 -2.21 7.36 88.48 0.65 -1.55 16 20 C 0.37 4.72 5.86 71.24 0.42 5.14 16 21 F -0.19 -3.48 17.27 44.97 0.78 -2.70 16 22 F -0.19 -2.77 17.13 44.97 0.77 -2.00 16 23 S 0.13 1.99 23.31 -56.49 -1.32 0.68 16 24 C -0.04 -1.21 9.69 22.25 0.22 -1.00 16 25 C -0.25 -9.61 9.17 22.39 0.21 -9.41 16 26 H 0.27 14.86 8.31 -92.71 -0.77 14.09 16 27 H 0.12 4.38 8.06 -2.91 -0.02 4.36 16 28 H 0.15 3.15 8.06 -2.91 -0.02 3.13 16 29 H 0.09 1.63 8.08 -2.39 -0.02 1.61 16 30 H 0.08 1.61 8.08 -2.39 -0.02 1.59 16 31 H 0.43 6.57 8.59 -92.71 -0.80 5.77 16 32 H 0.19 0.61 8.14 -2.39 -0.02 0.59 16 33 H 0.14 3.28 8.06 -2.91 -0.02 3.26 16 34 H 0.12 4.84 5.64 -2.91 -0.02 4.82 16 Total: -1.00 -71.08 329.95 4.69 -66.39 By element: Atomic # 1 Polarization: 15.75 SS G_CDS: 0.39 Total: 16.15 kcal Atomic # 6 Polarization: -30.27 SS G_CDS: 5.13 Total: -25.13 kcal Atomic # 7 Polarization: -80.62 SS G_CDS: -2.87 Total: -83.49 kcal Atomic # 8 Polarization: -12.96 SS G_CDS: -0.22 Total: -13.18 kcal Atomic # 9 Polarization: -6.25 SS G_CDS: 1.55 Total: -4.70 kcal Atomic # 14 Polarization: 41.27 SS G_CDS: 2.03 Total: 43.30 kcal Atomic # 16 Polarization: 1.99 SS G_CDS: -1.32 Total: 0.68 kcal Total: -71.08 4.69 -66.39 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000269351644.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.501 kcal (2) G-P(sol) polarization free energy of solvation -71.081 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.580 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.689 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.392 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.891 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds