Wall clock time and date at job start Tue Mar 31 2020 14:47:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.35244 * 126.06821 * 2 1 4 4 C 1.40428 * 107.86169 * 179.90447 * 3 2 1 5 5 N 1.39992 * 125.97582 * 180.14339 * 4 3 2 6 6 S 1.65604 * 119.99959 * 180.23225 * 5 4 3 7 7 O 1.42103 * 106.40007 * 178.54198 * 6 5 4 8 8 O 1.42095 * 106.40272 * 311.46670 * 6 5 4 9 9 C 1.76205 * 107.21594 * 65.00443 * 6 5 4 10 10 C 1.33387 * 125.20045 * 90.00066 * 9 6 5 11 11 C 1.38429 * 114.91733 * 179.97438 * 10 9 6 12 12 C 1.33387 * 114.92016 * 359.97438 * 11 10 9 13 13 S 1.75879 * 109.59438 * 359.75861 * 12 11 10 14 14 N 1.31220 * 108.04909 * 0.36555 * 4 3 2 15 15 N 1.34960 * 126.06853 * 180.31556 * 2 1 3 16 16 C 1.46498 * 125.97191 * 359.96192 * 15 2 1 17 17 C 1.50707 * 109.47366 * 90.00120 * 16 15 2 18 18 H 1.08005 * 119.99361 * 359.97438 * 17 16 15 19 19 C 1.37878 * 120.00150 * 179.97438 * 17 16 15 20 20 N 1.31514 * 120.00047 * 0.02562 * 19 17 16 21 21 Si 1.86792 * 119.99784 * 179.97438 * 19 17 16 22 22 H 1.48508 * 109.46902 * 90.00263 * 21 19 17 23 23 H 1.48499 * 109.47480 * 210.00074 * 21 19 17 24 24 H 1.48500 * 109.47640 * 330.00250 * 21 19 17 25 25 H 1.09002 * 109.47152 * 269.68518 * 1 2 3 26 26 H 1.09001 * 109.46980 * 149.68618 * 1 2 3 27 27 H 1.09004 * 109.47113 * 29.68599 * 1 2 3 28 28 H 1.08003 * 126.06901 * 0.04432 * 3 2 1 29 29 H 0.96999 * 120.00238 * 0.24132 * 5 4 3 30 30 H 1.07995 * 122.54296 * 359.95056 * 10 9 6 31 31 H 1.08004 * 122.53897 * 180.02562 * 11 10 9 32 32 H 1.08006 * 125.19847 * 180.02562 * 12 11 10 33 33 H 1.09006 * 109.47531 * 210.00084 * 16 15 2 34 34 H 1.09008 * 109.47462 * 330.00263 * 16 15 2 35 35 H 0.96996 * 119.99839 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3033 1.0932 0.0000 4 6 3.6372 0.6544 0.0022 5 7 4.7724 1.4737 0.0058 6 16 6.2831 0.7953 0.0022 7 8 7.2074 1.8743 -0.0276 8 8 6.2797 -0.1973 1.0190 9 6 6.4672 -0.0600 -1.5273 10 6 6.9521 0.4702 -2.6511 11 6 7.0031 -0.3959 -3.7298 12 6 6.5602 -1.6294 -3.4817 13 16 6.0478 -1.7456 -1.8032 14 7 3.6337 -0.6577 -0.0044 15 7 2.3016 -1.0909 -0.0060 16 6 1.8499 -2.4845 -0.0129 17 6 1.6942 -2.9551 -1.4361 18 1 1.9098 -2.2831 -2.2537 19 6 1.2766 -4.2435 -1.6944 20 7 1.0136 -5.0616 -0.6988 21 14 1.0831 -4.8266 -3.4584 22 1 2.3639 -5.4122 -3.9295 23 1 0.0142 -5.8553 -3.5253 24 1 0.7173 -3.6759 -4.3229 25 1 -0.3633 -0.0056 1.0277 26 1 -0.3633 -0.8872 -0.5187 27 1 -0.3633 0.8928 -0.5090 28 1 1.9720 2.1212 0.0007 29 1 4.6741 2.4387 0.0105 30 1 7.2796 1.4973 -2.7148 31 1 7.3743 -0.0958 -4.6987 32 1 6.5259 -2.4349 -4.2004 33 1 2.5847 -3.1072 0.4974 34 1 0.8914 -2.5584 0.5011 35 1 0.7195 -5.9678 -0.8805 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000271077209.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:47:34 Heat of formation + Delta-G solvation = 37.338950 kcal Electronic energy + Delta-G solvation = -23445.730175 eV Core-core repulsion = 19892.505221 eV Total energy + Delta-G solvation = -3553.224954 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 327.050 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.63044 -37.69574 -37.02304 -35.76736 -35.36344 -33.36023 -31.43817 -30.81351 -29.75535 -26.78773 -26.41832 -24.29595 -23.16661 -20.79900 -20.47345 -19.64576 -18.85727 -17.97246 -17.34184 -16.74022 -16.43469 -15.73113 -15.38012 -15.03365 -14.52641 -14.49327 -14.24419 -13.23073 -13.16395 -12.83797 -12.79503 -12.61378 -12.56798 -12.42922 -12.12239 -11.96221 -11.87766 -11.71200 -11.52972 -11.33641 -11.23444 -10.90319 -10.83313 -10.49965 -10.32788 -9.92959 -9.70048 -9.21285 -8.70846 -8.34099 -8.11451 -7.68005 -6.31895 -4.39451 0.34459 0.73799 1.69747 2.06706 2.53128 2.61192 2.84742 3.14141 3.21685 3.24614 3.28890 3.56412 3.84344 4.22655 4.65017 4.96449 4.99381 5.05490 5.25067 5.35058 5.40480 5.70438 5.87153 5.95673 6.05309 6.08831 6.10842 6.22898 6.36101 6.50985 6.71351 6.96784 7.10812 7.33221 7.59737 7.81609 7.91372 8.43061 8.67081 9.26679 10.75669 Molecular weight = 327.05amu Principal moments of inertia in cm(-1) A = 0.012459 B = 0.005600 C = 0.004338 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2246.817923 B = 4998.503776 C = 6452.981527 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.091 4.091 2 C 0.109 3.891 3 C -0.308 4.308 4 C 0.280 3.720 5 N -1.012 6.012 6 S 2.722 3.278 7 O -0.958 6.958 8 O -0.928 6.928 9 C -0.801 4.801 10 C -0.006 4.006 11 C -0.172 4.172 12 C -0.199 4.199 13 S 0.313 5.687 14 N -0.315 5.315 15 N -0.309 5.309 16 C 0.256 3.744 17 C -0.536 4.536 18 H 0.065 0.935 19 C 0.068 3.932 20 N -0.889 5.889 21 Si 0.901 3.099 22 H -0.278 1.278 23 H -0.283 1.283 24 H -0.272 1.272 25 H 0.073 0.927 26 H 0.085 0.915 27 H 0.076 0.924 28 H 0.139 0.861 29 H 0.431 0.569 30 H 0.148 0.852 31 H 0.142 0.858 32 H 0.169 0.831 33 H 0.056 0.944 34 H 0.056 0.944 35 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.478 11.028 -3.159 12.712 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.024 4.024 3 C -0.341 4.341 4 C 0.024 3.976 5 N -0.766 5.766 6 S 2.809 3.191 7 O -0.948 6.948 8 O -0.917 6.917 9 C -1.005 5.005 10 C -0.043 4.043 11 C -0.204 4.204 12 C -0.338 4.338 13 S 0.582 5.418 14 N -0.145 5.145 15 N -0.090 5.090 16 C 0.139 3.861 17 C -0.574 4.574 18 H 0.083 0.917 19 C -0.136 4.136 20 N -0.526 5.526 21 Si 0.728 3.272 22 H -0.204 1.204 23 H -0.208 1.208 24 H -0.197 1.197 25 H 0.092 0.908 26 H 0.103 0.897 27 H 0.094 0.906 28 H 0.157 0.843 29 H 0.267 0.733 30 H 0.165 0.835 31 H 0.160 0.840 32 H 0.186 0.814 33 H 0.074 0.926 34 H 0.074 0.926 35 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 6.151 8.289 -1.522 10.433 hybrid contribution -0.285 1.655 -2.706 3.185 sum 5.867 9.943 -4.228 12.295 Atomic orbital electron populations 1.20422 0.87679 1.04075 1.02786 1.20927 0.94866 0.86979 0.99660 1.20551 0.89780 0.98927 1.24828 1.18559 0.86801 0.89895 1.02306 1.52566 1.20072 1.16328 1.87651 1.01185 0.71520 0.73243 0.73152 1.93588 1.59515 1.54385 1.87311 1.93645 1.84968 1.59985 1.53143 1.35658 1.25398 1.13783 1.25651 1.19871 0.93660 1.00776 0.90036 1.20252 1.06230 0.93325 1.00549 1.26509 1.02886 1.01765 1.02609 1.85141 1.54025 1.01295 1.01382 1.77343 1.00403 1.07421 1.29368 1.49000 1.00537 1.07932 1.51569 1.19777 0.96195 0.71102 0.99072 1.21281 1.46980 0.97946 0.91214 0.91671 1.24897 0.94750 0.96088 0.97888 1.69913 1.44663 1.06990 1.31061 0.86433 0.78093 0.78651 0.83977 1.20385 1.20823 1.19667 0.90817 0.89653 0.90555 0.84274 0.73278 0.83453 0.84022 0.81371 0.92576 0.92621 0.92189 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.34 9.89 36.01 0.36 -0.98 16 2 C 0.11 2.01 6.92 -82.28 -0.57 1.44 16 3 C -0.31 -5.22 10.74 -39.82 -0.43 -5.64 16 4 C 0.28 5.18 7.72 -154.55 -1.19 3.99 16 5 N -1.01 -15.20 5.91 31.39 0.19 -15.01 16 6 S 2.72 44.83 5.64 -107.50 -0.61 44.23 16 7 O -0.96 -15.74 17.80 -57.17 -1.02 -16.76 16 8 O -0.93 -18.54 17.12 -57.17 -0.98 -19.52 16 9 C -0.80 -12.97 6.51 29.04 0.19 -12.79 16 10 C -0.01 -0.08 9.84 -41.21 -0.41 -0.49 16 11 C -0.17 -2.19 10.18 -41.21 -0.42 -2.61 16 12 C -0.20 -2.75 11.23 29.04 0.33 -2.43 16 13 S 0.31 5.44 22.44 -107.50 -2.41 3.03 16 14 N -0.31 -6.83 10.85 31.41 0.34 -6.49 16 15 N -0.31 -6.77 3.59 -58.32 -0.21 -6.98 16 16 C 0.26 6.17 5.81 -5.19 -0.03 6.14 16 17 C -0.54 -13.76 9.39 -34.44 -0.32 -14.08 16 18 H 0.07 1.71 7.81 -52.48 -0.41 1.30 16 19 C 0.07 1.75 5.46 -17.82 -0.10 1.65 16 20 N -0.89 -23.96 13.29 55.43 0.74 -23.22 16 21 Si 0.90 20.08 29.54 -169.99 -5.02 15.06 16 22 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 23 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 24 H -0.27 -5.99 7.11 56.52 0.40 -5.59 16 25 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 26 H 0.08 1.38 7.71 -51.93 -0.40 0.98 16 27 H 0.08 0.91 8.14 -51.93 -0.42 0.48 16 28 H 0.14 1.86 8.06 -52.48 -0.42 1.44 16 29 H 0.43 4.70 8.96 -34.47 -0.31 4.39 16 30 H 0.15 1.64 8.05 -52.49 -0.42 1.21 16 31 H 0.14 1.36 8.06 -52.48 -0.42 0.94 16 32 H 0.17 1.90 8.06 -52.48 -0.42 1.47 16 33 H 0.06 1.47 8.14 -51.93 -0.42 1.05 16 34 H 0.06 1.32 7.65 -51.92 -0.40 0.93 16 35 H 0.27 6.86 8.31 -40.82 -0.34 6.52 16 LS Contribution 338.27 15.07 5.10 5.10 Total: -1.00 -32.19 338.27 -10.09 -42.28 By element: Atomic # 1 Polarization: 7.69 SS G_CDS: -3.61 Total: 4.08 kcal Atomic # 6 Polarization: -23.21 SS G_CDS: -2.59 Total: -25.81 kcal Atomic # 7 Polarization: -52.75 SS G_CDS: 1.05 Total: -51.70 kcal Atomic # 8 Polarization: -34.28 SS G_CDS: -2.00 Total: -36.27 kcal Atomic # 14 Polarization: 20.08 SS G_CDS: -5.02 Total: 15.06 kcal Atomic # 16 Polarization: 50.27 SS G_CDS: -3.02 Total: 47.25 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -32.19 -10.09 -42.28 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000271077209.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.622 kcal (2) G-P(sol) polarization free energy of solvation -32.194 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.429 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.090 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.283 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.339 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds