Wall clock time and date at job start Tue Mar 31 2020 14:47:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.35244 * 126.06821 * 2 1 4 4 C 1.40428 * 107.86169 * 179.90447 * 3 2 1 5 5 N 1.39992 * 125.97582 * 180.14339 * 4 3 2 6 6 S 1.65604 * 119.99959 * 180.23225 * 5 4 3 7 7 O 1.42103 * 106.40007 * 178.54198 * 6 5 4 8 8 O 1.42095 * 106.40272 * 311.46670 * 6 5 4 9 9 C 1.76205 * 107.21594 * 65.00443 * 6 5 4 10 10 C 1.33387 * 125.20045 * 90.00066 * 9 6 5 11 11 C 1.38429 * 114.91733 * 179.97438 * 10 9 6 12 12 C 1.33387 * 114.92016 * 359.97438 * 11 10 9 13 13 S 1.75879 * 109.59438 * 359.75861 * 12 11 10 14 14 N 1.31220 * 108.04909 * 0.36555 * 4 3 2 15 15 N 1.34960 * 126.06853 * 180.31556 * 2 1 3 16 16 C 1.46498 * 125.97191 * 359.96192 * 15 2 1 17 17 C 1.50707 * 109.47366 * 90.00120 * 16 15 2 18 18 H 1.08005 * 119.99361 * 359.97438 * 17 16 15 19 19 C 1.37878 * 120.00150 * 179.97438 * 17 16 15 20 20 N 1.31514 * 120.00047 * 0.02562 * 19 17 16 21 21 Si 1.86792 * 119.99784 * 179.97438 * 19 17 16 22 22 H 1.48508 * 109.46902 * 90.00263 * 21 19 17 23 23 H 1.48499 * 109.47480 * 210.00074 * 21 19 17 24 24 H 1.48500 * 109.47640 * 330.00250 * 21 19 17 25 25 H 1.09002 * 109.47152 * 269.68518 * 1 2 3 26 26 H 1.09001 * 109.46980 * 149.68618 * 1 2 3 27 27 H 1.09004 * 109.47113 * 29.68599 * 1 2 3 28 28 H 1.08003 * 126.06901 * 0.04432 * 3 2 1 29 29 H 0.96999 * 120.00238 * 0.24132 * 5 4 3 30 30 H 1.07995 * 122.54296 * 359.95056 * 10 9 6 31 31 H 1.08004 * 122.53897 * 180.02562 * 11 10 9 32 32 H 1.08006 * 125.19847 * 180.02562 * 12 11 10 33 33 H 1.09006 * 109.47531 * 210.00084 * 16 15 2 34 34 H 1.09008 * 109.47462 * 330.00263 * 16 15 2 35 35 H 0.96996 * 119.99839 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3033 1.0932 0.0000 4 6 3.6372 0.6544 0.0022 5 7 4.7724 1.4737 0.0058 6 16 6.2831 0.7953 0.0022 7 8 7.2074 1.8743 -0.0276 8 8 6.2797 -0.1973 1.0190 9 6 6.4672 -0.0600 -1.5273 10 6 6.9521 0.4702 -2.6511 11 6 7.0031 -0.3959 -3.7298 12 6 6.5602 -1.6294 -3.4817 13 16 6.0478 -1.7456 -1.8032 14 7 3.6337 -0.6577 -0.0044 15 7 2.3016 -1.0909 -0.0060 16 6 1.8499 -2.4845 -0.0129 17 6 1.6942 -2.9551 -1.4361 18 1 1.9098 -2.2831 -2.2537 19 6 1.2766 -4.2435 -1.6944 20 7 1.0136 -5.0616 -0.6988 21 14 1.0831 -4.8266 -3.4584 22 1 2.3639 -5.4122 -3.9295 23 1 0.0142 -5.8553 -3.5253 24 1 0.7173 -3.6759 -4.3229 25 1 -0.3633 -0.0056 1.0277 26 1 -0.3633 -0.8872 -0.5187 27 1 -0.3633 0.8928 -0.5090 28 1 1.9720 2.1212 0.0007 29 1 4.6741 2.4387 0.0105 30 1 7.2796 1.4973 -2.7148 31 1 7.3743 -0.0958 -4.6987 32 1 6.5259 -2.4349 -4.2004 33 1 2.5847 -3.1072 0.4974 34 1 0.8914 -2.5584 0.5011 35 1 0.7195 -5.9678 -0.8805 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000271077209.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:47:33 Heat of formation + Delta-G solvation = 15.024161 kcal Electronic energy + Delta-G solvation = -23446.697817 eV Core-core repulsion = 19892.505221 eV Total energy + Delta-G solvation = -3554.192596 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 327.050 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -42.10072 -38.84094 -38.34000 -37.16104 -36.80042 -35.22926 -32.79466 -32.51712 -30.88874 -28.50464 -27.82140 -25.41966 -24.98569 -22.24995 -21.75860 -20.93484 -20.04747 -19.31375 -18.79658 -18.61752 -17.79100 -17.07831 -16.88483 -16.45432 -16.10621 -15.90201 -15.59436 -14.71748 -14.42402 -14.31766 -14.08746 -13.90412 -13.78875 -13.58059 -13.47951 -13.39357 -13.31021 -13.27701 -13.15031 -12.76631 -12.67087 -12.64537 -12.35649 -12.19003 -11.68327 -11.52453 -11.34464 -10.70431 -10.35561 -9.71536 -9.47948 -9.18756 -8.28980 -6.44772 -0.91900 -0.43237 0.47767 0.91948 1.14620 1.35728 1.37817 1.40033 1.49895 1.60283 1.90406 2.12132 2.36253 2.54534 3.01733 3.35251 3.65247 3.92793 3.99567 4.33208 4.38590 4.44648 4.65437 4.78936 4.83656 4.85674 4.95505 5.00867 5.01955 5.14247 5.30705 5.35562 5.58753 5.75393 5.86009 5.99350 6.30039 6.67249 6.96314 7.25336 8.77674 Molecular weight = 327.05amu Principal moments of inertia in cm(-1) A = 0.012459 B = 0.005600 C = 0.004338 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2246.817923 B = 4998.503776 C = 6452.981527 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.087 4.087 2 C 0.097 3.903 3 C -0.297 4.297 4 C 0.279 3.721 5 N -0.997 5.997 6 S 2.737 3.263 7 O -0.957 6.957 8 O -0.970 6.970 9 C -0.812 4.812 10 C 0.007 3.993 11 C -0.165 4.165 12 C -0.183 4.183 13 S 0.203 5.797 14 N -0.354 5.354 15 N -0.338 5.338 16 C 0.274 3.726 17 C -0.540 4.540 18 H 0.055 0.945 19 C 0.023 3.977 20 N -0.920 5.920 21 Si 0.963 3.037 22 H -0.276 1.276 23 H -0.275 1.275 24 H -0.265 1.265 25 H 0.091 0.909 26 H 0.063 0.937 27 H 0.111 0.889 28 H 0.183 0.817 29 H 0.449 0.551 30 H 0.181 0.819 31 H 0.186 0.814 32 H 0.194 0.806 33 H 0.019 0.981 34 H 0.053 0.947 35 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.429 13.543 -5.582 15.622 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.034 4.034 3 C -0.329 4.329 4 C 0.023 3.977 5 N -0.754 5.754 6 S 2.826 3.174 7 O -0.948 6.948 8 O -0.960 6.960 9 C -1.016 5.016 10 C -0.030 4.030 11 C -0.195 4.195 12 C -0.322 4.322 13 S 0.470 5.530 14 N -0.184 5.184 15 N -0.120 5.120 16 C 0.155 3.845 17 C -0.579 4.579 18 H 0.073 0.927 19 C -0.178 4.178 20 N -0.558 5.558 21 Si 0.787 3.213 22 H -0.202 1.202 23 H -0.200 1.200 24 H -0.190 1.190 25 H 0.110 0.890 26 H 0.082 0.918 27 H 0.129 0.871 28 H 0.200 0.800 29 H 0.290 0.710 30 H 0.198 0.802 31 H 0.203 0.797 32 H 0.211 0.789 33 H 0.037 0.963 34 H 0.070 0.930 35 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 6.102 10.870 -3.927 13.069 hybrid contribution -0.169 1.015 -2.001 2.250 sum 5.933 11.885 -5.928 14.546 Atomic orbital electron populations 1.20541 0.85161 1.04692 1.04141 1.21717 0.96636 0.86292 0.98757 1.21010 0.88507 1.00417 1.23002 1.18880 0.88345 0.89508 1.01010 1.52346 1.18705 1.17121 1.87260 1.00489 0.71534 0.72577 0.72834 1.93580 1.59584 1.54137 1.87452 1.93597 1.85651 1.61375 1.55419 1.35436 1.27486 1.12483 1.26212 1.20450 0.91058 1.02287 0.89205 1.20734 1.04639 0.92286 1.01851 1.26779 1.01980 1.03226 1.00180 1.85555 1.57455 1.04071 1.05870 1.77323 1.00599 1.09382 1.31096 1.48750 1.01375 1.07689 1.54232 1.19242 0.94723 0.72591 0.97911 1.21390 1.46748 0.98122 0.91614 0.92683 1.25672 0.94299 0.96084 1.01705 1.70012 1.45446 1.07356 1.33032 0.85481 0.78142 0.78340 0.79349 1.20153 1.19999 1.18961 0.89004 0.91806 0.87060 0.80020 0.70983 0.80226 0.79734 0.78903 0.96312 0.92970 0.91959 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -2.41 9.89 71.24 0.70 -1.71 16 2 C 0.10 3.50 6.92 41.39 0.29 3.79 16 3 C -0.30 -9.42 10.74 22.11 0.24 -9.18 16 4 C 0.28 10.15 7.72 133.39 1.03 11.18 16 5 N -1.00 -28.66 5.91 -54.61 -0.32 -28.98 16 6 S 2.74 89.32 5.64 -56.49 -0.32 89.00 16 7 O -0.96 -30.00 17.80 -128.00 -2.28 -32.28 16 8 O -0.97 -40.35 17.12 -128.00 -2.19 -42.54 16 9 C -0.81 -25.79 6.51 66.72 0.43 -25.35 16 10 C 0.01 0.18 9.84 21.22 0.21 0.39 16 11 C -0.16 -3.60 10.18 21.22 0.22 -3.39 16 12 C -0.18 -4.77 11.23 66.72 0.75 -4.02 16 13 S 0.20 7.29 22.44 -56.49 -1.27 6.03 16 14 N -0.35 -15.79 10.85 -54.54 -0.59 -16.39 16 15 N -0.34 -15.27 3.59 -338.42 -1.22 -16.48 16 16 C 0.27 13.97 5.81 85.64 0.50 14.47 16 17 C -0.54 -28.72 9.39 25.60 0.24 -28.48 16 18 H 0.05 2.98 7.81 -2.91 -0.02 2.95 16 19 C 0.02 1.22 5.46 84.65 0.46 1.68 16 20 N -0.92 -51.04 13.29 21.45 0.28 -50.76 16 21 Si 0.96 41.40 29.54 68.60 2.03 43.43 16 22 H -0.28 -11.70 7.11 99.48 0.71 -10.99 16 23 H -0.27 -11.41 7.11 99.48 0.71 -10.70 16 24 H -0.27 -11.03 7.11 99.48 0.71 -10.32 16 25 H 0.09 2.20 8.14 -2.39 -0.02 2.18 16 26 H 0.06 2.05 7.71 -2.39 -0.02 2.03 16 27 H 0.11 2.26 8.14 -2.38 -0.02 2.24 16 28 H 0.18 4.06 8.06 -2.91 -0.02 4.03 16 29 H 0.45 8.72 8.96 -96.75 -0.87 7.85 16 30 H 0.18 3.21 8.05 -2.91 -0.02 3.18 16 31 H 0.19 2.51 8.06 -2.91 -0.02 2.48 16 32 H 0.19 3.91 8.06 -2.91 -0.02 3.89 16 33 H 0.02 1.07 8.14 -2.38 -0.02 1.05 16 34 H 0.05 2.63 7.65 -2.38 -0.02 2.61 16 35 H 0.27 14.15 8.31 -92.71 -0.77 13.38 16 Total: -1.00 -73.18 338.27 -0.54 -73.71 By element: Atomic # 1 Polarization: 15.60 SS G_CDS: 0.27 Total: 15.87 kcal Atomic # 6 Polarization: -45.69 SS G_CDS: 5.07 Total: -40.62 kcal Atomic # 7 Polarization: -110.76 SS G_CDS: -1.85 Total: -112.60 kcal Atomic # 8 Polarization: -70.35 SS G_CDS: -4.47 Total: -74.82 kcal Atomic # 14 Polarization: 41.40 SS G_CDS: 2.03 Total: 43.43 kcal Atomic # 16 Polarization: 96.62 SS G_CDS: -1.59 Total: 95.03 kcal Total: -73.18 -0.54 -73.71 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000271077209.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.737 kcal (2) G-P(sol) polarization free energy of solvation -73.176 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.561 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.537 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.713 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.024 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds