Wall clock time and date at job start Tue Mar 31 2020 15:02:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86797 * 119.99834 * 2 1 4 4 H 1.48504 * 109.47395 * 270.00462 * 3 2 1 5 5 H 1.48504 * 109.47218 * 30.00200 * 3 2 1 6 6 H 1.48500 * 109.47369 * 149.99989 * 3 2 1 7 7 C 1.37873 * 120.00062 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99698 * 180.02562 * 7 2 1 9 9 C 1.50700 * 120.00463 * 359.97438 * 7 2 1 10 10 C 1.52999 * 109.47535 * 180.02562 * 9 7 2 11 11 S 1.81395 * 109.46986 * 180.02562 * 10 9 7 12 12 O 1.42105 * 110.54530 * 291.62628 * 11 10 9 13 13 O 1.42101 * 110.54333 * 68.37799 * 11 10 9 14 14 O 1.52198 * 104.44745 * 180.02562 * 11 10 9 15 15 C 1.35974 * 114.00199 * 75.00293 * 14 11 10 16 16 C 1.38752 * 120.14318 * 89.99588 * 15 14 11 17 17 C 1.38224 * 120.13668 * 180.02562 * 16 15 14 18 18 C 1.38331 * 120.29893 * 359.97438 * 17 16 15 19 19 C 1.38467 * 119.97477 * 0.02562 * 18 17 16 20 20 C 1.38904 * 120.13865 * 269.72856 * 15 14 11 21 21 N 1.40427 * 120.74559 * 0.60932 * 20 15 14 22 22 C 1.35100 * 118.88304 * 195.19576 * 21 20 15 23 23 O 1.21302 * 120.14331 * 181.37217 * 22 21 20 24 24 C 1.50760 * 119.70381 * 1.40456 * 22 21 20 25 25 O 1.35991 * 120.64693 * 180.02562 * 19 18 17 26 26 H 0.96996 * 119.99792 * 359.97438 * 1 2 3 27 27 H 1.09004 * 109.46657 * 60.00257 * 9 7 2 28 28 H 1.09005 * 109.47061 * 300.00589 * 9 7 2 29 29 H 1.09003 * 109.46593 * 60.00142 * 10 9 7 30 30 H 1.08994 * 109.46870 * 300.00510 * 10 9 7 31 31 H 1.07993 * 119.93437 * 0.03776 * 16 15 14 32 32 H 1.07996 * 119.85347 * 180.02562 * 17 16 15 33 33 H 1.08004 * 120.01422 * 179.97438 * 18 17 16 34 34 H 0.96995 * 120.58365 * 14.91585 * 21 20 15 35 35 H 1.09008 * 109.43944 * 208.60506 * 24 22 21 36 36 H 1.08993 * 109.42000 * 88.69078 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4965 2.0466 -1.4001 5 1 1.4465 2.6527 0.7001 6 1 3.5467 1.4403 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1939 -0.0001 9 6 1.2512 -2.4992 -0.0005 10 6 2.2454 -3.6621 -0.0005 11 16 1.3385 -5.2330 -0.0013 12 8 0.6640 -5.4200 1.2354 13 8 0.6649 -5.4193 -1.2386 14 8 2.4250 -6.2988 -0.0006 15 6 3.0440 -6.4567 1.1997 16 6 2.5494 -7.3650 2.1247 17 6 3.1785 -7.5250 3.3450 18 6 4.3044 -6.7825 3.6524 19 6 4.8053 -5.8736 2.7357 20 6 4.1776 -5.7134 1.5029 21 7 4.6926 -4.7830 0.5858 22 6 5.9451 -4.3109 0.7687 23 8 6.4036 -3.4879 0.0046 24 6 6.7707 -4.8122 1.9264 25 8 5.9115 -5.1369 3.0235 26 1 -0.4850 0.8400 0.0004 27 1 0.6242 -2.5567 -0.8904 28 1 0.6248 -2.5571 0.8897 29 1 2.8720 -3.6043 0.8895 30 1 2.8721 -3.6042 -0.8904 31 1 1.6712 -7.9483 1.8906 32 1 2.7898 -8.2336 4.0613 33 1 4.7920 -6.9109 4.6075 34 1 4.1598 -4.4871 -0.1688 35 1 7.4732 -4.0372 2.2334 36 1 7.3221 -5.7011 1.6202 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000271629643.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:02:53 Heat of formation + Delta-G solvation = -132.936787 kcal Electronic energy + Delta-G solvation = -26650.323523 eV Core-core repulsion = 22614.669238 eV Total energy + Delta-G solvation = -4035.654286 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 327.070 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -42.15387 -40.45427 -38.92716 -37.26150 -36.90059 -35.87973 -35.59077 -33.96646 -31.35050 -30.75804 -29.96707 -28.13174 -25.91294 -24.17583 -23.85554 -22.16376 -20.73934 -20.27063 -19.15119 -18.63666 -17.92484 -17.47643 -17.16051 -16.92852 -16.29458 -15.89806 -15.66824 -15.30513 -15.01205 -14.92244 -14.66325 -14.58491 -13.84569 -13.64459 -13.40561 -13.04803 -12.59425 -12.50288 -12.19046 -12.11516 -11.91890 -11.89964 -11.81919 -11.51793 -11.28691 -11.13949 -10.97652 -10.53843 -10.46467 -10.34182 -9.83866 -9.31392 -8.98419 -8.54598 -8.39494 -6.17104 -4.22915 0.07825 0.63437 0.88651 1.99891 2.15214 2.42870 2.85458 3.17180 3.25426 3.31494 3.35621 3.57081 3.83780 4.09361 4.28100 4.34394 4.36460 4.56301 4.62522 4.78481 4.83421 5.06537 5.16723 5.23338 5.32748 5.43464 5.52538 5.80378 5.92865 6.08535 6.18730 6.24618 6.40142 6.82356 7.17095 7.22991 7.46389 7.76060 8.09341 8.80007 9.42666 10.93778 Molecular weight = 327.07amu Principal moments of inertia in cm(-1) A = 0.011726 B = 0.005489 C = 0.004284 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2387.306685 B = 5099.682515 C = 6533.867183 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.060 3.940 3 Si 0.900 3.100 4 H -0.278 1.278 5 H -0.284 1.284 6 H -0.272 1.272 7 C -0.522 4.522 8 H 0.062 0.938 9 C 0.037 3.963 10 C -0.629 4.629 11 S 2.567 3.433 12 O -0.948 6.948 13 O -0.927 6.927 14 O -0.670 6.670 15 C 0.072 3.928 16 C -0.082 4.082 17 C -0.094 4.094 18 C -0.092 4.092 19 C 0.093 3.907 20 C 0.089 3.911 21 N -0.667 5.667 22 C 0.491 3.509 23 O -0.493 6.493 24 C 0.051 3.949 25 O -0.293 6.293 26 H 0.266 0.734 27 H 0.038 0.962 28 H 0.038 0.962 29 H 0.126 0.874 30 H 0.124 0.876 31 H 0.150 0.850 32 H 0.151 0.849 33 H 0.151 0.849 34 H 0.420 0.580 35 H 0.151 0.849 36 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.525 -17.060 8.176 22.153 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.143 4.143 3 Si 0.727 3.273 4 H -0.204 1.204 5 H -0.209 1.209 6 H -0.197 1.197 7 C -0.561 4.561 8 H 0.080 0.920 9 C -0.002 4.002 10 C -0.760 4.760 11 S 2.666 3.334 12 O -0.947 6.947 13 O -0.925 6.925 14 O -0.628 6.628 15 C 0.027 3.973 16 C -0.102 4.102 17 C -0.113 4.113 18 C -0.111 4.111 19 C 0.046 3.954 20 C -0.010 4.010 21 N -0.321 5.321 22 C 0.277 3.723 23 O -0.365 6.365 24 C -0.027 4.027 25 O -0.207 6.207 26 H 0.076 0.924 27 H 0.056 0.944 28 H 0.056 0.944 29 H 0.144 0.856 30 H 0.142 0.858 31 H 0.168 0.832 32 H 0.169 0.831 33 H 0.169 0.831 34 H 0.266 0.734 35 H 0.168 0.832 36 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 11.341 -17.008 7.797 21.879 hybrid contribution 0.421 1.683 -0.906 1.957 sum 11.762 -15.325 6.891 20.511 Atomic orbital electron populations 1.69946 1.06080 1.27328 1.49373 1.25034 0.94978 0.99544 0.94698 0.86457 0.79750 0.82693 0.78370 1.20357 1.20918 1.19714 1.20965 0.93087 0.89578 1.52507 0.92024 1.18932 0.92116 0.89838 0.99272 1.31078 1.14713 1.20302 1.09891 1.06449 0.75417 0.76625 0.74904 1.93604 1.72099 1.83486 1.45493 1.93610 1.69850 1.84189 1.44865 1.85820 1.64939 1.71884 1.40134 1.17332 0.94914 1.01837 0.83222 1.21231 1.00141 0.96351 0.92477 1.20927 0.94554 0.99824 0.96006 1.20747 0.97465 0.92971 0.99959 1.18295 0.89876 0.95450 0.91772 1.18173 0.96373 0.94830 0.91625 1.44507 1.16621 1.42202 1.28736 1.21566 0.81835 0.81592 0.87295 1.90868 1.69707 1.29939 1.46000 1.23298 0.91727 1.03670 0.84025 1.86312 1.32967 1.68227 1.33178 0.92443 0.94418 0.94367 0.85618 0.85804 0.83195 0.83126 0.83103 0.73420 0.83171 0.87799 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.37 13.29 55.43 0.74 -25.64 16 2 C 0.06 1.72 5.46 -17.82 -0.10 1.62 16 3 Si 0.90 21.69 29.54 -169.99 -5.02 16.67 16 4 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 5 H -0.28 -6.71 7.11 56.52 0.40 -6.30 16 6 H -0.27 -6.48 7.11 56.52 0.40 -6.07 16 7 C -0.52 -14.58 9.11 -34.44 -0.31 -14.90 16 8 H 0.06 1.68 7.74 -52.48 -0.41 1.27 16 9 C 0.04 0.94 4.98 -27.88 -0.14 0.80 16 10 C -0.63 -12.42 3.95 37.16 0.15 -12.27 16 11 S 2.57 47.42 5.17 -107.50 -0.56 46.86 16 12 O -0.95 -18.53 16.26 -67.04 -1.09 -19.62 16 13 O -0.93 -19.73 18.09 -67.03 -1.21 -20.94 16 14 O -0.67 -10.36 9.58 -51.98 -0.50 -10.86 16 15 C 0.07 0.99 4.80 -39.14 -0.19 0.80 16 16 C -0.08 -0.90 9.05 -39.40 -0.36 -1.26 16 17 C -0.09 -0.75 10.03 -39.55 -0.40 -1.15 16 18 C -0.09 -0.76 10.00 -39.46 -0.39 -1.15 16 19 C 0.09 1.02 6.44 -39.12 -0.25 0.77 16 20 C 0.09 1.17 5.73 -83.29 -0.48 0.70 16 21 N -0.67 -9.60 4.17 -9.54 -0.04 -9.64 16 22 C 0.49 6.73 7.94 -10.81 -0.09 6.65 16 23 O -0.49 -8.44 17.95 5.54 0.10 -8.34 16 24 C 0.05 0.46 7.17 36.03 0.26 0.71 16 25 O -0.29 -3.03 10.45 -19.71 -0.21 -3.23 16 26 H 0.27 7.39 8.31 -40.82 -0.34 7.05 16 27 H 0.04 1.00 8.14 -51.93 -0.42 0.58 16 28 H 0.04 1.01 8.14 -51.93 -0.42 0.59 16 29 H 0.13 2.33 5.94 -51.92 -0.31 2.03 16 30 H 0.12 2.21 6.96 -51.93 -0.36 1.85 16 31 H 0.15 1.44 8.06 -52.49 -0.42 1.02 16 32 H 0.15 0.66 8.06 -52.49 -0.42 0.24 16 33 H 0.15 0.79 8.06 -52.48 -0.42 0.37 16 34 H 0.42 6.37 4.65 -40.82 -0.19 6.18 16 35 H 0.15 1.03 8.14 -51.92 -0.42 0.60 16 36 H 0.10 0.62 8.14 -51.93 -0.42 0.20 16 LS Contribution 320.84 15.07 4.83 4.83 Total: -1.00 -36.58 320.84 -8.61 -45.19 By element: Atomic # 1 Polarization: 6.75 SS G_CDS: -3.36 Total: 3.39 kcal Atomic # 6 Polarization: -16.38 SS G_CDS: -2.30 Total: -18.67 kcal Atomic # 7 Polarization: -35.98 SS G_CDS: 0.70 Total: -35.28 kcal Atomic # 8 Polarization: -60.08 SS G_CDS: -2.91 Total: -62.99 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -5.02 Total: 16.67 kcal Atomic # 16 Polarization: 47.42 SS G_CDS: -0.56 Total: 46.86 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -36.58 -8.61 -45.19 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000271629643.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -87.747 kcal (2) G-P(sol) polarization free energy of solvation -36.581 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.328 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.609 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.190 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.937 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds