Wall clock time and date at job start Tue Mar 31 2020 15:02:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86797 * 119.99834 * 2 1 4 4 H 1.48504 * 109.47395 * 270.00462 * 3 2 1 5 5 H 1.48504 * 109.47218 * 30.00200 * 3 2 1 6 6 H 1.48500 * 109.47369 * 149.99989 * 3 2 1 7 7 C 1.37873 * 120.00062 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99698 * 180.02562 * 7 2 1 9 9 C 1.50700 * 120.00463 * 359.97438 * 7 2 1 10 10 C 1.52999 * 109.47535 * 180.02562 * 9 7 2 11 11 S 1.81395 * 109.46986 * 180.02562 * 10 9 7 12 12 O 1.42105 * 110.54530 * 291.62628 * 11 10 9 13 13 O 1.42101 * 110.54333 * 68.37799 * 11 10 9 14 14 O 1.52198 * 104.44745 * 180.02562 * 11 10 9 15 15 C 1.35974 * 114.00199 * 75.00293 * 14 11 10 16 16 C 1.38752 * 120.14318 * 89.99588 * 15 14 11 17 17 C 1.38224 * 120.13668 * 180.02562 * 16 15 14 18 18 C 1.38331 * 120.29893 * 359.97438 * 17 16 15 19 19 C 1.38467 * 119.97477 * 0.02562 * 18 17 16 20 20 C 1.38904 * 120.13865 * 269.72856 * 15 14 11 21 21 N 1.40427 * 120.74559 * 0.60932 * 20 15 14 22 22 C 1.35100 * 118.88304 * 195.19576 * 21 20 15 23 23 O 1.21302 * 120.14331 * 181.37217 * 22 21 20 24 24 C 1.50760 * 119.70381 * 1.40456 * 22 21 20 25 25 O 1.35991 * 120.64693 * 180.02562 * 19 18 17 26 26 H 0.96996 * 119.99792 * 359.97438 * 1 2 3 27 27 H 1.09004 * 109.46657 * 60.00257 * 9 7 2 28 28 H 1.09005 * 109.47061 * 300.00589 * 9 7 2 29 29 H 1.09003 * 109.46593 * 60.00142 * 10 9 7 30 30 H 1.08994 * 109.46870 * 300.00510 * 10 9 7 31 31 H 1.07993 * 119.93437 * 0.03776 * 16 15 14 32 32 H 1.07996 * 119.85347 * 180.02562 * 17 16 15 33 33 H 1.08004 * 120.01422 * 179.97438 * 18 17 16 34 34 H 0.96995 * 120.58365 * 14.91585 * 21 20 15 35 35 H 1.09008 * 109.43944 * 208.60506 * 24 22 21 36 36 H 1.08993 * 109.42000 * 88.69078 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4965 2.0466 -1.4001 5 1 1.4465 2.6527 0.7001 6 1 3.5467 1.4403 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1939 -0.0001 9 6 1.2512 -2.4992 -0.0005 10 6 2.2454 -3.6621 -0.0005 11 16 1.3385 -5.2330 -0.0013 12 8 0.6640 -5.4200 1.2354 13 8 0.6649 -5.4193 -1.2386 14 8 2.4250 -6.2988 -0.0006 15 6 3.0440 -6.4567 1.1997 16 6 2.5494 -7.3650 2.1247 17 6 3.1785 -7.5250 3.3450 18 6 4.3044 -6.7825 3.6524 19 6 4.8053 -5.8736 2.7357 20 6 4.1776 -5.7134 1.5029 21 7 4.6926 -4.7830 0.5858 22 6 5.9451 -4.3109 0.7687 23 8 6.4036 -3.4879 0.0046 24 6 6.7707 -4.8122 1.9264 25 8 5.9115 -5.1369 3.0235 26 1 -0.4850 0.8400 0.0004 27 1 0.6242 -2.5567 -0.8904 28 1 0.6248 -2.5571 0.8897 29 1 2.8720 -3.6043 0.8895 30 1 2.8721 -3.6042 -0.8904 31 1 1.6712 -7.9483 1.8906 32 1 2.7898 -8.2336 4.0613 33 1 4.7920 -6.9109 4.6075 34 1 4.1598 -4.4871 -0.1688 35 1 7.4732 -4.0372 2.2334 36 1 7.3221 -5.7011 1.6202 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000271629643.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:02:53 Heat of formation + Delta-G solvation = -161.410120 kcal Electronic energy + Delta-G solvation = -26651.558220 eV Core-core repulsion = 22614.669238 eV Total energy + Delta-G solvation = -4036.888982 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 327.070 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -43.11527 -41.54745 -39.92033 -38.52236 -38.07065 -37.40949 -36.74031 -35.89377 -33.32710 -31.56984 -30.85050 -28.96297 -27.87443 -25.13260 -24.90299 -23.89952 -21.92411 -21.26079 -20.26876 -19.76133 -19.28966 -18.65193 -18.52196 -18.18386 -17.75993 -17.05740 -16.66770 -16.58172 -16.41990 -16.13587 -15.93191 -15.61448 -15.37744 -14.74534 -14.59854 -14.41569 -13.98755 -13.88436 -13.71637 -13.51161 -13.42437 -13.09260 -13.05192 -12.99668 -12.84689 -12.48730 -12.35544 -12.26303 -12.01943 -11.88434 -11.38918 -11.25804 -10.72255 -9.87624 -9.27882 -8.34435 -6.48155 -1.26264 -0.25786 -0.04913 0.87398 1.05998 1.34096 1.35292 1.44355 1.46800 2.06563 2.28051 2.36274 2.39842 2.69589 2.75221 2.98878 3.29788 3.41816 3.59140 3.67510 3.87868 3.97390 4.09141 4.17457 4.40695 4.44938 4.56093 4.70887 5.00180 5.08023 5.10697 5.14426 5.21880 5.41674 5.47625 5.58018 5.95403 6.00989 6.42340 6.62699 7.21893 8.77588 Molecular weight = 327.07amu Principal moments of inertia in cm(-1) A = 0.011726 B = 0.005489 C = 0.004284 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2387.306685 B = 5099.682515 C = 6533.867183 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.926 5.926 2 C 0.005 3.995 3 Si 0.969 3.031 4 H -0.271 1.271 5 H -0.274 1.274 6 H -0.266 1.266 7 C -0.542 4.542 8 H 0.063 0.937 9 C 0.033 3.967 10 C -0.629 4.629 11 S 2.598 3.402 12 O -0.960 6.960 13 O -0.962 6.962 14 O -0.658 6.658 15 C 0.028 3.972 16 C -0.092 4.092 17 C -0.076 4.076 18 C -0.071 4.071 19 C 0.085 3.915 20 C 0.068 3.932 21 N -0.680 5.680 22 C 0.482 3.518 23 O -0.540 6.540 24 C 0.057 3.943 25 O -0.293 6.293 26 H 0.270 0.730 27 H 0.015 0.985 28 H 0.019 0.981 29 H 0.136 0.864 30 H 0.136 0.864 31 H 0.160 0.840 32 H 0.197 0.803 33 H 0.192 0.808 34 H 0.409 0.591 35 H 0.174 0.826 36 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.470 -18.475 10.805 25.288 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.565 5.565 2 C -0.194 4.194 3 Si 0.792 3.208 4 H -0.196 1.196 5 H -0.199 1.199 6 H -0.190 1.190 7 C -0.581 4.581 8 H 0.081 0.919 9 C -0.005 4.005 10 C -0.757 4.757 11 S 2.697 3.303 12 O -0.959 6.959 13 O -0.960 6.960 14 O -0.617 6.617 15 C -0.016 4.016 16 C -0.113 4.113 17 C -0.094 4.094 18 C -0.090 4.090 19 C 0.038 3.962 20 C -0.030 4.030 21 N -0.331 5.331 22 C 0.271 3.729 23 O -0.416 6.416 24 C -0.020 4.020 25 O -0.207 6.207 26 H 0.079 0.921 27 H 0.034 0.966 28 H 0.038 0.962 29 H 0.154 0.846 30 H 0.154 0.846 31 H 0.178 0.822 32 H 0.214 0.786 33 H 0.209 0.791 34 H 0.252 0.748 35 H 0.191 0.809 36 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 13.276 -18.428 10.441 24.997 hybrid contribution -0.127 1.941 -1.591 2.513 sum 13.149 -16.486 8.850 22.870 Atomic orbital electron populations 1.70061 1.07679 1.28506 1.50262 1.25980 0.95879 1.03421 0.94152 0.85395 0.78524 0.78133 0.78724 1.19603 1.19923 1.19050 1.21357 0.93401 0.90994 1.52364 0.91911 1.18738 0.92860 0.91672 0.97275 1.30976 1.13915 1.19734 1.11124 1.05476 0.75116 0.75901 0.73812 1.93559 1.72832 1.83546 1.45928 1.93556 1.71404 1.84610 1.46416 1.85793 1.64338 1.69954 1.41566 1.17899 0.96010 1.04301 0.83411 1.21648 1.00788 0.95720 0.93112 1.21505 0.93387 0.99458 0.95054 1.21326 0.96635 0.90640 1.00436 1.18678 0.90110 0.96109 0.91336 1.18452 0.96960 0.95121 0.92458 1.44658 1.17034 1.42630 1.28787 1.22549 0.81663 0.80696 0.87968 1.90833 1.70583 1.32126 1.48053 1.23557 0.90757 1.05744 0.81911 1.86313 1.32848 1.68205 1.33291 0.92089 0.96629 0.96236 0.84584 0.84615 0.82220 0.78553 0.79076 0.74759 0.80889 0.84171 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.37 13.29 21.45 0.28 -56.09 16 2 C 0.01 0.29 5.46 84.65 0.46 0.76 16 3 Si 0.97 44.94 29.54 68.60 2.03 46.96 16 4 H -0.27 -12.18 7.11 99.48 0.71 -11.48 16 5 H -0.27 -12.22 7.11 99.48 0.71 -11.51 16 6 H -0.27 -11.97 7.11 99.48 0.71 -11.26 16 7 C -0.54 -31.23 9.11 25.60 0.23 -30.99 16 8 H 0.06 3.50 7.74 -2.91 -0.02 3.48 16 9 C 0.03 1.77 4.98 29.85 0.15 1.91 16 10 C -0.63 -25.94 3.95 71.98 0.28 -25.66 16 11 S 2.60 99.09 5.17 -56.49 -0.29 98.80 16 12 O -0.96 -38.01 16.26 -118.57 -1.93 -39.94 16 13 O -0.96 -42.60 18.09 -118.57 -2.15 -44.74 16 14 O -0.66 -20.65 9.58 -62.35 -0.60 -21.24 16 15 C 0.03 0.76 4.80 22.55 0.11 0.87 16 16 C -0.09 -1.81 9.05 22.39 0.20 -1.60 16 17 C -0.08 -0.85 10.03 22.29 0.22 -0.62 16 18 C -0.07 -0.82 10.00 22.35 0.22 -0.60 16 19 C 0.08 1.61 6.44 22.57 0.15 1.76 16 20 C 0.07 1.73 5.73 38.17 0.22 1.95 16 21 N -0.68 -19.73 4.17 -302.31 -1.26 -21.00 16 22 C 0.48 13.11 7.94 87.63 0.70 13.81 16 23 O -0.54 -18.92 17.95 -3.10 -0.06 -18.97 16 24 C 0.06 0.89 7.17 71.25 0.51 1.40 16 25 O -0.29 -5.11 10.45 -93.45 -0.98 -6.08 16 26 H 0.27 15.31 8.31 -92.71 -0.77 14.54 16 27 H 0.02 0.88 8.14 -2.39 -0.02 0.86 16 28 H 0.02 1.09 8.14 -2.38 -0.02 1.07 16 29 H 0.14 5.26 5.94 -2.39 -0.01 5.24 16 30 H 0.14 5.15 6.96 -2.39 -0.02 5.13 16 31 H 0.16 2.73 8.06 -2.91 -0.02 2.70 16 32 H 0.20 0.43 8.06 -2.91 -0.02 0.40 16 33 H 0.19 0.72 8.06 -2.91 -0.02 0.70 16 34 H 0.41 12.97 4.65 -92.71 -0.43 12.54 16 35 H 0.17 1.88 8.14 -2.38 -0.02 1.86 16 36 H 0.14 1.19 8.14 -2.39 -0.02 1.17 16 Total: -1.00 -83.13 320.84 -0.77 -83.91 By element: Atomic # 1 Polarization: 14.71 SS G_CDS: 0.72 Total: 15.43 kcal Atomic # 6 Polarization: -40.48 SS G_CDS: 3.46 Total: -37.03 kcal Atomic # 7 Polarization: -76.10 SS G_CDS: -0.98 Total: -77.08 kcal Atomic # 8 Polarization: -125.28 SS G_CDS: -5.70 Total: -130.99 kcal Atomic # 14 Polarization: 44.94 SS G_CDS: 2.03 Total: 46.96 kcal Atomic # 16 Polarization: 99.09 SS G_CDS: -0.29 Total: 98.80 kcal Total: -83.13 -0.77 -83.91 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000271629643.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.504 kcal (2) G-P(sol) polarization free energy of solvation -83.134 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -160.638 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.772 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.906 kcal (6) G-S(sol) free energy of system = (1) + (5) -161.410 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds