Wall clock time and date at job start Tue Mar 31 2020 14:22:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09000 * 109.47251 * 2 1 4 4 C 1.50693 * 109.47541 * 120.00275 * 2 1 3 5 5 H 1.08007 * 120.00455 * 120.00035 * 4 2 1 6 6 C 1.37880 * 119.99885 * 299.99769 * 4 2 1 7 7 N 1.31515 * 119.99836 * 0.02562 * 6 4 2 8 8 Si 1.86802 * 120.00205 * 179.97438 * 6 4 2 9 9 H 1.48499 * 109.47327 * 270.00540 * 8 6 4 10 10 H 1.48505 * 109.46816 * 30.00289 * 8 6 4 11 11 H 1.48498 * 109.47177 * 149.99983 * 8 6 4 12 12 N 1.46509 * 109.47009 * 240.00130 * 2 1 3 13 13 C 1.46504 * 119.99802 * 299.99838 * 12 2 1 14 14 C 1.34776 * 120.00006 * 119.99721 * 12 2 1 15 15 O 1.21578 * 119.99935 * 0.02562 * 14 12 2 16 16 N 1.34769 * 120.00062 * 180.02562 * 14 12 2 17 17 C 1.39576 * 120.00250 * 175.78345 * 16 14 12 18 18 C 1.39386 * 120.86267 * 34.17282 * 17 16 14 19 19 C 1.37934 * 119.08763 * 179.97438 * 18 17 16 20 20 N 1.31977 * 120.85602 * 0.02562 * 19 18 17 21 21 C 1.31954 * 121.90414 * 359.97438 * 20 19 18 22 22 C 1.38047 * 120.81946 * 359.74349 * 21 20 19 23 23 Br 1.89099 * 120.47036 * 180.26259 * 22 21 20 24 24 H 1.09005 * 109.46864 * 180.02562 * 1 2 3 25 25 H 1.08999 * 109.46961 * 299.99279 * 1 2 3 26 26 H 1.08999 * 109.47571 * 60.00209 * 1 2 3 27 27 H 0.96998 * 119.99926 * 179.97438 * 7 6 4 28 28 H 1.09004 * 109.46709 * 89.99764 * 13 12 2 29 29 H 1.08999 * 109.46430 * 209.99658 * 13 12 2 30 30 H 1.08996 * 109.46674 * 330.00084 * 13 12 2 31 31 H 0.97001 * 120.00182 * 355.78596 * 16 14 12 32 32 H 1.07999 * 120.45301 * 359.95523 * 18 17 16 33 33 H 1.07999 * 119.57467 * 180.02562 * 19 18 17 34 34 H 1.08000 * 119.59241 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 1.2303 5 1 2.6534 -1.5885 1.1312 6 6 1.6994 -0.2394 2.4827 7 7 0.9429 0.8296 2.6034 8 14 2.3216 -1.1204 4.0079 9 1 1.3430 -2.1618 4.4118 10 1 3.6296 -1.7583 3.7120 11 1 2.4868 -0.1414 5.1122 12 7 2.0183 -0.6906 -1.1963 13 6 1.6644 -2.0932 -1.4281 14 6 2.7931 -0.0356 -2.0834 15 8 3.0872 1.1282 -1.8908 16 7 3.2419 -0.6707 -3.1841 17 6 3.9702 0.0305 -4.1464 18 6 4.8314 1.0631 -3.7792 19 6 5.5338 1.7314 -4.7604 20 7 5.3979 1.4046 -6.0318 21 6 4.5931 0.4337 -6.4201 22 6 3.8594 -0.2875 -5.4996 23 35 2.7147 -1.6819 -6.0664 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5137 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 0.7083 1.1608 3.4844 28 1 0.7374 -2.1444 -1.9993 29 1 2.4628 -2.5818 -1.9865 30 1 1.5295 -2.5968 -0.4709 31 1 3.0588 -1.6153 -3.3076 32 1 4.9470 1.3363 -2.7407 33 1 6.2036 2.5325 -4.4846 34 1 4.5108 0.1972 -7.4707 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000272674916.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:22:30 Heat of formation + Delta-G solvation = 22.932447 kcal Electronic energy + Delta-G solvation = -19892.550353 eV Core-core repulsion = 16679.476423 eV Total energy + Delta-G solvation = -3213.073930 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 327.032 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.81945 -39.31274 -35.97845 -34.97878 -33.02394 -32.48766 -30.90367 -29.62811 -28.93027 -26.34176 -25.29905 -23.95595 -23.12950 -21.38215 -19.49628 -18.38734 -17.33509 -16.41133 -16.27882 -15.73077 -15.36988 -14.88080 -14.57620 -14.21179 -14.04705 -13.71686 -13.26940 -12.84096 -12.63545 -12.03412 -11.78494 -11.63690 -11.47562 -11.14303 -10.92848 -10.81769 -10.69036 -10.64419 -10.35315 -10.24043 -9.86426 -9.41575 -9.23254 -9.01558 -8.60523 -8.50685 -7.74526 -6.14831 -4.23409 0.82002 1.15223 1.38946 2.84835 3.21662 3.29440 3.31828 3.46257 3.77351 4.21452 4.36224 4.37226 4.63586 4.85680 5.11839 5.16943 5.44195 5.49179 5.70961 5.85154 5.94294 6.17856 6.31837 6.55429 6.70481 6.71692 6.89149 7.01497 7.31723 7.57073 7.66897 7.81802 7.95333 8.10247 8.42667 8.75036 8.96846 9.43362 10.90480 Molecular weight = 327.03amu Principal moments of inertia in cm(-1) A = 0.021372 B = 0.003796 C = 0.003444 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1309.835363 B = 7374.737368 C = 8127.621401 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.272 3.728 3 H 0.066 0.934 4 C -0.529 4.529 5 H 0.060 0.940 6 C 0.066 3.934 7 N -0.886 5.886 8 Si 0.900 3.100 9 H -0.280 1.280 10 H -0.274 1.274 11 H -0.285 1.285 12 N -0.597 5.597 13 C 0.081 3.919 14 C 0.697 3.303 15 O -0.573 6.573 16 N -0.687 5.687 17 C 0.254 3.746 18 C -0.171 4.171 19 C 0.127 3.873 20 N -0.498 5.498 21 C 0.149 3.851 22 C -0.191 4.191 23 Br -0.038 7.038 24 H 0.030 0.970 25 H 0.095 0.905 26 H 0.012 0.988 27 H 0.264 0.736 28 H 0.047 0.953 29 H 0.045 0.955 30 H 0.089 0.911 31 H 0.409 0.591 32 H 0.164 0.836 33 H 0.165 0.835 34 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.200 -6.094 -16.990 18.532 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.172 3.828 3 H 0.084 0.916 4 C -0.568 4.568 5 H 0.078 0.922 6 C -0.136 4.136 7 N -0.524 5.524 8 Si 0.727 3.273 9 H -0.206 1.206 10 H -0.199 1.199 11 H -0.210 1.210 12 N -0.330 5.330 13 C -0.063 4.063 14 C 0.399 3.601 15 O -0.450 6.450 16 N -0.337 5.337 17 C 0.145 3.855 18 C -0.194 4.194 19 C -0.028 4.028 20 N -0.209 5.209 21 C -0.011 4.011 22 C -0.276 4.276 23 Br 0.045 6.955 24 H 0.049 0.951 25 H 0.114 0.886 26 H 0.031 0.969 27 H 0.074 0.926 28 H 0.066 0.934 29 H 0.064 0.936 30 H 0.108 0.892 31 H 0.248 0.752 32 H 0.182 0.818 33 H 0.182 0.818 34 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges 4.268 -5.208 -17.359 18.619 hybrid contribution -0.163 -1.275 1.590 2.045 sum 4.105 -6.483 -15.769 17.537 Atomic orbital electron populations 1.22108 0.97977 0.99533 1.00959 1.18971 0.90844 0.94332 0.78641 0.91594 1.21297 1.32138 1.13188 0.90191 0.92194 1.24880 0.94868 0.94935 0.98961 1.69874 1.36105 1.22467 1.23918 0.86472 0.79169 0.79301 0.82313 1.20575 1.19941 1.21037 1.47672 1.50241 1.11642 1.23470 1.21610 0.98530 0.83236 1.02923 1.15951 0.79826 0.84973 0.79342 1.90874 1.62504 1.15330 1.76309 1.43113 1.56205 1.13416 1.20950 1.17555 0.89235 0.92330 0.86400 1.22503 0.95796 0.97325 1.03779 1.22823 0.95667 0.96976 0.87363 1.67822 1.18660 1.15283 1.19175 1.22569 0.89935 0.89505 0.99116 1.22802 1.06709 1.03491 0.94608 1.96685 1.63344 1.45495 1.89930 0.95073 0.88621 0.96916 0.92562 0.93405 0.93610 0.89240 0.75213 0.81826 0.81802 0.81952 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.42 8.97 37.16 0.33 -3.08 16 2 C 0.27 6.69 2.64 -69.08 -0.18 6.51 16 3 H 0.07 1.88 6.90 -51.93 -0.36 1.53 16 4 C -0.53 -13.74 7.99 -34.44 -0.28 -14.01 16 5 H 0.06 1.53 7.33 -52.48 -0.38 1.14 16 6 C 0.07 1.75 5.30 -17.82 -0.09 1.66 16 7 N -0.89 -24.33 11.32 55.43 0.63 -23.70 16 8 Si 0.90 20.42 29.54 -169.99 -5.02 15.39 16 9 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 10 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 11 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 12 N -0.60 -12.23 2.75 -181.01 -0.50 -12.72 16 13 C 0.08 1.29 9.23 59.85 0.55 1.84 16 14 C 0.70 14.07 8.14 -86.93 -0.71 13.37 16 15 O -0.57 -13.42 13.12 5.30 0.07 -13.35 16 16 N -0.69 -10.91 4.93 -14.05 -0.07 -10.97 16 17 C 0.25 3.83 6.35 -83.45 -0.53 3.30 16 18 C -0.17 -2.57 8.78 -39.27 -0.34 -2.91 16 19 C 0.13 1.63 11.17 -17.60 -0.20 1.43 16 20 N -0.50 -6.51 10.36 -13.32 -0.14 -6.65 16 21 C 0.15 1.78 10.94 -17.57 -0.19 1.59 16 22 C -0.19 -2.46 6.26 -39.20 -0.25 -2.70 16 23 Br -0.04 -0.42 32.65 -68.01 -2.22 -2.64 16 24 H 0.03 0.66 7.67 -51.93 -0.40 0.26 16 25 H 0.10 2.44 6.07 -51.93 -0.32 2.13 16 26 H 0.01 0.26 8.14 -51.93 -0.42 -0.16 16 27 H 0.26 6.92 8.31 -40.82 -0.34 6.58 16 28 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 29 H 0.05 0.58 6.30 -51.93 -0.33 0.26 16 30 H 0.09 1.50 7.02 -51.93 -0.36 1.13 16 31 H 0.41 5.53 5.66 -40.82 -0.23 5.30 16 32 H 0.16 2.76 6.27 -52.49 -0.33 2.43 16 33 H 0.16 1.62 8.06 -52.49 -0.42 1.19 16 34 H 0.16 1.49 8.06 -52.49 -0.42 1.06 16 LS Contribution 305.70 15.07 4.61 4.61 Total: -1.00 -29.62 305.70 -8.06 -37.68 By element: Atomic # 1 Polarization: 8.93 SS G_CDS: -3.53 Total: 5.40 kcal Atomic # 6 Polarization: 8.85 SS G_CDS: -1.88 Total: 6.97 kcal Atomic # 7 Polarization: -53.98 SS G_CDS: -0.08 Total: -54.05 kcal Atomic # 8 Polarization: -13.42 SS G_CDS: 0.07 Total: -13.35 kcal Atomic # 14 Polarization: 20.42 SS G_CDS: -5.02 Total: 15.39 kcal Atomic # 35 Polarization: -0.42 SS G_CDS: -2.22 Total: -2.64 kcal Total LS contribution 4.61 Total: 4.61 kcal Total: -29.62 -8.06 -37.68 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000272674916.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.612 kcal (2) G-P(sol) polarization free energy of solvation -29.620 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.992 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.060 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.680 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.932 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds