Wall clock time and date at job start Tue Mar 31 2020 14:22:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09000 * 109.47251 * 2 1 4 4 C 1.50693 * 109.47541 * 120.00275 * 2 1 3 5 5 H 1.08007 * 120.00455 * 120.00035 * 4 2 1 6 6 C 1.37880 * 119.99885 * 299.99769 * 4 2 1 7 7 N 1.31515 * 119.99836 * 0.02562 * 6 4 2 8 8 Si 1.86802 * 120.00205 * 179.97438 * 6 4 2 9 9 H 1.48499 * 109.47327 * 270.00540 * 8 6 4 10 10 H 1.48505 * 109.46816 * 30.00289 * 8 6 4 11 11 H 1.48498 * 109.47177 * 149.99983 * 8 6 4 12 12 N 1.46509 * 109.47009 * 240.00130 * 2 1 3 13 13 C 1.46504 * 119.99802 * 299.99838 * 12 2 1 14 14 C 1.34776 * 120.00006 * 119.99721 * 12 2 1 15 15 O 1.21578 * 119.99935 * 0.02562 * 14 12 2 16 16 N 1.34769 * 120.00062 * 180.02562 * 14 12 2 17 17 C 1.39576 * 120.00250 * 175.78345 * 16 14 12 18 18 C 1.39386 * 120.86267 * 34.17282 * 17 16 14 19 19 C 1.37934 * 119.08763 * 179.97438 * 18 17 16 20 20 N 1.31977 * 120.85602 * 0.02562 * 19 18 17 21 21 C 1.31954 * 121.90414 * 359.97438 * 20 19 18 22 22 C 1.38047 * 120.81946 * 359.74349 * 21 20 19 23 23 Br 1.89099 * 120.47036 * 180.26259 * 22 21 20 24 24 H 1.09005 * 109.46864 * 180.02562 * 1 2 3 25 25 H 1.08999 * 109.46961 * 299.99279 * 1 2 3 26 26 H 1.08999 * 109.47571 * 60.00209 * 1 2 3 27 27 H 0.96998 * 119.99926 * 179.97438 * 7 6 4 28 28 H 1.09004 * 109.46709 * 89.99764 * 13 12 2 29 29 H 1.08999 * 109.46430 * 209.99658 * 13 12 2 30 30 H 1.08996 * 109.46674 * 330.00084 * 13 12 2 31 31 H 0.97001 * 120.00182 * 355.78596 * 16 14 12 32 32 H 1.07999 * 120.45301 * 359.95523 * 18 17 16 33 33 H 1.07999 * 119.57467 * 180.02562 * 19 18 17 34 34 H 1.08000 * 119.59241 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 1.2303 5 1 2.6534 -1.5885 1.1312 6 6 1.6994 -0.2394 2.4827 7 7 0.9429 0.8296 2.6034 8 14 2.3216 -1.1204 4.0079 9 1 1.3430 -2.1618 4.4118 10 1 3.6296 -1.7583 3.7120 11 1 2.4868 -0.1414 5.1122 12 7 2.0183 -0.6906 -1.1963 13 6 1.6644 -2.0932 -1.4281 14 6 2.7931 -0.0356 -2.0834 15 8 3.0872 1.1282 -1.8908 16 7 3.2419 -0.6707 -3.1841 17 6 3.9702 0.0305 -4.1464 18 6 4.8314 1.0631 -3.7792 19 6 5.5338 1.7314 -4.7604 20 7 5.3979 1.4046 -6.0318 21 6 4.5931 0.4337 -6.4201 22 6 3.8594 -0.2875 -5.4996 23 35 2.7147 -1.6819 -6.0664 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5137 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 0.7083 1.1608 3.4844 28 1 0.7374 -2.1444 -1.9993 29 1 2.4628 -2.5818 -1.9865 30 1 1.5295 -2.5968 -0.4709 31 1 3.0588 -1.6153 -3.3076 32 1 4.9470 1.3363 -2.7407 33 1 6.2036 2.5325 -4.4846 34 1 4.5108 0.1972 -7.4707 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000272674916.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:22:29 Heat of formation + Delta-G solvation = 4.697573 kcal Electronic energy + Delta-G solvation = -19893.341076 eV Core-core repulsion = 16679.476423 eV Total energy + Delta-G solvation = -3213.864653 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 327.032 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -42.10054 -40.62414 -37.56620 -36.44601 -34.84307 -33.54892 -32.26080 -30.97706 -30.25561 -27.75761 -27.30300 -25.20007 -24.23775 -22.95455 -21.03858 -19.73289 -18.79837 -18.23718 -17.47195 -17.18172 -16.75608 -16.43707 -16.03285 -15.45104 -15.24156 -15.01267 -14.67680 -14.46898 -14.13995 -13.55958 -13.18251 -13.11540 -12.93215 -12.73115 -12.66001 -12.49259 -12.22151 -12.13004 -11.87845 -11.64880 -11.31841 -11.17131 -10.59511 -10.51543 -10.07970 -9.84748 -9.34267 -8.14834 -6.31089 -0.22208 0.04639 0.39745 1.42261 1.43031 1.48134 1.54999 2.00292 2.41356 2.64600 2.86237 3.14030 3.43737 3.59023 3.79067 4.03775 4.25804 4.43086 4.60339 4.67362 4.72701 4.81294 4.88750 4.93919 5.03722 5.19511 5.35361 5.47393 5.54379 5.62788 5.86314 6.08762 6.15463 6.74972 6.79539 6.87937 7.31763 7.46567 8.89627 Molecular weight = 327.03amu Principal moments of inertia in cm(-1) A = 0.021372 B = 0.003796 C = 0.003444 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1309.835363 B = 7374.737368 C = 8127.621401 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.278 3.722 3 H 0.015 0.985 4 C -0.539 4.539 5 H 0.063 0.937 6 C 0.018 3.982 7 N -0.916 5.916 8 Si 0.965 3.035 9 H -0.268 1.268 10 H -0.271 1.271 11 H -0.287 1.287 12 N -0.605 5.605 13 C 0.076 3.924 14 C 0.695 3.305 15 O -0.614 6.614 16 N -0.672 5.672 17 C 0.231 3.769 18 C -0.190 4.190 19 C 0.135 3.865 20 N -0.504 5.504 21 C 0.154 3.846 22 C -0.189 4.189 23 Br -0.015 7.015 24 H 0.048 0.952 25 H 0.070 0.930 26 H 0.018 0.982 27 H 0.265 0.735 28 H 0.069 0.931 29 H 0.078 0.922 30 H 0.081 0.919 31 H 0.420 0.580 32 H 0.139 0.861 33 H 0.190 0.810 34 H 0.195 0.805 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.554 -7.913 -18.519 20.647 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.177 3.823 3 H 0.033 0.967 4 C -0.577 4.577 5 H 0.081 0.919 6 C -0.182 4.182 7 N -0.554 5.554 8 Si 0.790 3.210 9 H -0.193 1.193 10 H -0.196 1.196 11 H -0.213 1.213 12 N -0.338 5.338 13 C -0.066 4.066 14 C 0.397 3.603 15 O -0.494 6.494 16 N -0.322 5.322 17 C 0.123 3.877 18 C -0.213 4.213 19 C -0.020 4.020 20 N -0.215 5.215 21 C -0.005 4.005 22 C -0.274 4.274 23 Br 0.069 6.931 24 H 0.067 0.933 25 H 0.088 0.912 26 H 0.037 0.963 27 H 0.074 0.926 28 H 0.087 0.913 29 H 0.096 0.904 30 H 0.100 0.900 31 H 0.261 0.739 32 H 0.157 0.843 33 H 0.207 0.793 34 H 0.212 0.788 Dipole moment (debyes) X Y Z Total from point charges 4.628 -7.084 -18.944 20.748 hybrid contribution -0.250 -0.703 1.938 2.076 sum 4.378 -7.787 -17.006 19.210 Atomic orbital electron populations 1.21895 0.97005 1.00251 0.99989 1.18536 0.91479 0.92137 0.80190 0.96694 1.21552 1.32055 1.13199 0.90933 0.91928 1.25688 0.95033 0.95570 1.01886 1.70015 1.37163 1.23780 1.24487 0.85459 0.78801 0.78227 0.78523 1.19337 1.19615 1.21282 1.47516 1.50426 1.13335 1.22546 1.21855 1.00809 0.80554 1.03389 1.16055 0.79615 0.84567 0.80102 1.90849 1.63829 1.17332 1.77415 1.42738 1.55880 1.13761 1.19850 1.17770 0.89794 0.92955 0.87164 1.22408 0.97284 0.98464 1.03169 1.23162 0.95136 0.96863 0.86886 1.67930 1.18983 1.15682 1.18882 1.23123 0.88607 0.88417 1.00371 1.22903 1.06889 1.04061 0.93595 1.96708 1.62618 1.44258 1.89516 0.93324 0.91152 0.96257 0.92597 0.91273 0.90366 0.89999 0.73856 0.84343 0.79292 0.78810 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.24 8.97 71.98 0.65 -5.59 16 2 C 0.28 14.05 2.64 44.24 0.12 14.17 16 3 H 0.02 0.91 6.90 -2.39 -0.02 0.89 16 4 C -0.54 -28.26 7.99 25.60 0.20 -28.06 16 5 H 0.06 3.17 7.33 -2.91 -0.02 3.15 16 6 C 0.02 0.97 5.30 84.66 0.45 1.42 16 7 N -0.92 -51.48 11.32 21.45 0.24 -51.23 16 8 Si 0.96 41.91 29.54 68.60 2.03 43.93 16 9 H -0.27 -11.09 7.11 99.48 0.71 -10.38 16 10 H -0.27 -11.56 7.11 99.48 0.71 -10.85 16 11 H -0.29 -12.49 7.11 99.48 0.71 -11.78 16 12 N -0.60 -24.82 2.75 -844.85 -2.33 -27.14 16 13 C 0.08 2.28 9.23 127.77 1.18 3.46 16 14 C 0.69 28.45 8.14 179.06 1.46 29.90 16 15 O -0.61 -30.10 13.12 -3.96 -0.05 -30.15 16 16 N -0.67 -20.84 4.93 -316.64 -1.56 -22.41 16 17 C 0.23 6.81 6.35 38.48 0.24 7.05 16 18 C -0.19 -5.77 8.78 22.47 0.20 -5.58 16 19 C 0.13 3.32 11.17 84.60 0.95 4.27 16 20 N -0.50 -12.13 10.36 -196.05 -2.03 -14.16 16 21 C 0.15 3.29 10.94 84.63 0.93 4.21 16 22 C -0.19 -4.50 6.26 22.52 0.14 -4.36 16 23 Br -0.02 -0.29 32.65 -20.37 -0.67 -0.95 16 24 H 0.05 2.05 7.67 -2.38 -0.02 2.04 16 25 H 0.07 3.68 6.07 -2.39 -0.01 3.67 16 26 H 0.02 0.83 8.14 -2.39 -0.02 0.81 16 27 H 0.26 14.14 8.31 -92.71 -0.77 13.37 16 28 H 0.07 1.78 8.14 -2.38 -0.02 1.76 16 29 H 0.08 1.80 6.30 -2.39 -0.02 1.78 16 30 H 0.08 2.60 7.02 -2.39 -0.02 2.58 16 31 H 0.42 10.59 5.66 -92.71 -0.52 10.07 16 32 H 0.14 4.95 6.27 -2.91 -0.02 4.93 16 33 H 0.19 3.50 8.06 -2.91 -0.02 3.48 16 34 H 0.20 2.82 8.06 -2.91 -0.02 2.80 16 Total: -1.00 -65.65 305.70 2.76 -62.89 By element: Atomic # 1 Polarization: 17.70 SS G_CDS: 0.62 Total: 18.32 kcal Atomic # 6 Polarization: 14.40 SS G_CDS: 6.51 Total: 20.91 kcal Atomic # 7 Polarization: -109.27 SS G_CDS: -5.67 Total: -114.95 kcal Atomic # 8 Polarization: -30.10 SS G_CDS: -0.05 Total: -30.15 kcal Atomic # 14 Polarization: 41.91 SS G_CDS: 2.03 Total: 43.93 kcal Atomic # 35 Polarization: -0.29 SS G_CDS: -0.67 Total: -0.95 kcal Total: -65.65 2.76 -62.89 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000272674916.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.590 kcal (2) G-P(sol) polarization free energy of solvation -65.654 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.937 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.761 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.893 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.698 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds