Wall clock time and date at job start Tue Mar 31 2020 15:20:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86802 * 120.00329 * 2 1 4 4 H 1.48499 * 109.47197 * 269.99808 * 3 2 1 5 5 H 1.48504 * 109.47070 * 29.99810 * 3 2 1 6 6 H 1.48503 * 109.47076 * 149.99955 * 3 2 1 7 7 C 1.37880 * 119.99980 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00091 * 179.97438 * 7 2 1 9 9 C 1.50694 * 119.99800 * 0.02562 * 7 2 1 10 10 C 1.53001 * 109.47400 * 179.97438 * 9 7 2 11 11 N 1.46500 * 109.47377 * 179.97438 * 10 9 7 12 12 C 1.34775 * 120.00054 * 180.02562 * 11 10 9 13 13 O 1.21287 * 119.99741 * 359.97438 * 12 11 10 14 14 C 1.50701 * 120.00263 * 179.97438 * 12 11 10 15 15 H 1.09000 * 115.54586 * 34.32711 * 14 12 11 16 16 C 1.52990 * 117.50044 * 248.61827 * 14 12 11 17 17 C 1.52994 * 60.00369 * 252.51158 * 16 14 12 18 18 H 1.09003 * 117.51596 * 252.52560 * 17 16 14 19 19 C 1.50691 * 117.50203 * 107.49032 * 17 16 14 20 20 C 1.38220 * 119.98849 * 171.38249 * 19 17 16 21 21 C 1.38358 * 120.01552 * 180.02562 * 20 19 17 22 22 Cl 1.73603 * 120.01029 * 180.02562 * 21 20 19 23 23 C 1.38335 * 119.98725 * 359.97438 * 21 20 19 24 24 C 1.38332 * 119.96971 * 359.97438 * 23 21 20 25 25 Cl 1.73608 * 120.00233 * 180.02562 * 24 23 21 26 26 C 1.38224 * 119.98609 * 351.35516 * 19 17 16 27 27 H 0.97004 * 119.99581 * 0.02562 * 1 2 3 28 28 H 1.09004 * 109.47648 * 59.99803 * 9 7 2 29 29 H 1.09006 * 109.47191 * 299.99411 * 9 7 2 30 30 H 1.09007 * 109.46807 * 59.99958 * 10 9 7 31 31 H 1.09002 * 109.47323 * 299.99984 * 10 9 7 32 32 H 0.96998 * 120.00384 * 0.02562 * 11 10 9 33 33 H 1.09006 * 117.50413 * 145.01537 * 16 14 12 34 34 H 1.09002 * 117.49957 * 0.02562 * 16 14 12 35 35 H 1.08002 * 119.99585 * 359.97438 * 20 19 17 36 36 H 1.07996 * 120.01281 * 179.73124 * 23 21 20 37 37 H 1.07991 * 119.99407 * 359.97438 * 26 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0464 -1.4001 5 1 1.4467 2.6527 0.7000 6 1 3.5468 1.4400 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4991 0.0005 10 6 2.2451 -3.6621 0.0005 11 7 1.5126 -4.9308 0.0012 12 6 2.1864 -6.0980 0.0018 13 8 3.3992 -6.0980 0.0014 14 6 1.4329 -7.4031 0.0030 15 1 0.4943 -7.4045 -0.5513 16 6 1.5085 -8.2614 1.2672 17 6 2.2550 -8.6935 0.0036 18 1 1.8571 -9.5439 -0.5503 19 6 3.7561 -8.5622 0.0029 20 6 4.4961 -9.0989 -1.0338 21 6 5.8745 -8.9792 -1.0347 22 17 6.8037 -9.6528 -2.3372 23 6 6.5121 -8.3215 0.0020 24 6 5.7708 -7.7836 1.0387 25 17 6.5700 -6.9576 2.3398 26 6 4.3925 -7.9045 1.0388 27 1 -0.4850 0.8401 -0.0004 28 1 0.6246 -2.5571 -0.8897 29 1 0.6240 -2.5567 0.8904 30 1 2.8718 -3.6044 0.8906 31 1 2.8718 -3.6045 -0.8895 32 1 0.5426 -4.9308 0.0011 33 1 0.6195 -8.8276 1.5452 34 1 2.1030 -7.8819 2.0984 35 1 3.9984 -9.6127 -1.8429 36 1 7.5883 -8.2316 0.0039 37 1 3.8138 -7.4845 1.8481 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000273002004.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:20:15 Heat of formation + Delta-G solvation = -6.330456 kcal Electronic energy + Delta-G solvation = -22324.735984 eV Core-core repulsion = 18733.237219 eV Total energy + Delta-G solvation = -3591.498765 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 327.053 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.58184 -38.88553 -36.92080 -36.73373 -35.90074 -34.79930 -32.87558 -30.96536 -30.60687 -29.64349 -25.59416 -24.28811 -23.51306 -22.76231 -21.08649 -20.79835 -19.74028 -17.89282 -16.75332 -16.31191 -15.89413 -15.69435 -15.20733 -15.04352 -14.59425 -14.44455 -14.26979 -13.96244 -13.81479 -13.05822 -12.82623 -12.41344 -12.33646 -12.29042 -11.98681 -11.81778 -11.44503 -11.22752 -11.10553 -11.05412 -10.96157 -10.70638 -10.66446 -10.54954 -10.33775 -9.84644 -9.54368 -9.28504 -8.74404 -8.56600 -8.40498 -8.27544 -6.11741 -4.14566 1.00797 1.07012 1.79922 2.28211 2.66920 3.28103 3.34064 3.36279 3.38961 3.55403 3.83554 4.28747 4.39936 4.55960 4.67790 4.77784 4.85478 4.96458 5.09878 5.15888 5.25517 5.34542 5.46866 5.54402 5.64058 5.73797 5.97905 6.09340 6.30024 6.31291 6.32388 6.52527 6.70421 6.87556 7.48445 7.58220 7.86323 7.97004 8.25047 8.60297 8.91432 9.50524 10.99826 Molecular weight = 327.05amu Principal moments of inertia in cm(-1) A = 0.013202 B = 0.002923 C = 0.002753 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2120.417296 B = 9575.456145 C =10167.696391 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.059 3.941 3 Si 0.896 3.104 4 H -0.279 1.279 5 H -0.286 1.286 6 H -0.272 1.272 7 C -0.522 4.522 8 H 0.059 0.941 9 C 0.013 3.987 10 C 0.123 3.877 11 N -0.715 5.715 12 C 0.526 3.474 13 O -0.534 6.534 14 C -0.176 4.176 15 H 0.129 0.871 16 C -0.147 4.147 17 C -0.088 4.088 18 H 0.126 0.874 19 C -0.020 4.020 20 C -0.099 4.099 21 C -0.032 4.032 22 Cl -0.071 7.071 23 C -0.104 4.104 24 C -0.028 4.028 25 Cl -0.066 7.066 26 C -0.032 4.032 27 H 0.262 0.738 28 H 0.022 0.978 29 H 0.022 0.978 30 H 0.056 0.944 31 H 0.056 0.944 32 H 0.397 0.603 33 H 0.112 0.888 34 H 0.104 0.896 35 H 0.133 0.867 36 H 0.137 0.863 37 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.524 -22.750 0.971 23.431 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.142 4.142 3 Si 0.724 3.276 4 H -0.205 1.205 5 H -0.211 1.211 6 H -0.197 1.197 7 C -0.560 4.560 8 H 0.077 0.923 9 C -0.024 4.024 10 C 0.001 3.999 11 N -0.364 5.364 12 C 0.312 3.688 13 O -0.412 6.412 14 C -0.197 4.197 15 H 0.147 0.853 16 C -0.184 4.184 17 C -0.106 4.106 18 H 0.144 0.856 19 C -0.021 4.021 20 C -0.118 4.118 21 C -0.059 4.059 22 Cl -0.042 7.042 23 C -0.123 4.123 24 C -0.055 4.055 25 Cl -0.037 7.037 26 C -0.050 4.050 27 H 0.072 0.928 28 H 0.040 0.960 29 H 0.040 0.960 30 H 0.074 0.926 31 H 0.074 0.926 32 H 0.231 0.769 33 H 0.130 0.870 34 H 0.122 0.878 35 H 0.151 0.849 36 H 0.155 0.845 37 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 6.403 -22.563 0.973 23.474 hybrid contribution -0.034 1.220 -0.177 1.233 sum 6.369 -21.343 0.796 22.287 Atomic orbital electron populations 1.69952 1.06091 1.26889 1.50375 1.24990 0.94890 0.99412 0.94953 0.86522 0.79874 0.82999 0.78237 1.20534 1.21143 1.19699 1.21045 0.93236 0.90390 1.51369 0.92281 1.19315 0.94179 0.91147 0.97784 1.21720 0.95995 0.81417 1.00767 1.46320 1.10548 1.06418 1.73131 1.19613 0.87725 0.84521 0.76988 1.90739 1.13382 1.86884 1.50210 1.22435 1.01884 0.90780 1.04600 0.85327 1.23159 1.02729 1.01230 0.91264 1.20996 0.89686 0.97424 1.02532 0.85643 1.18624 0.93028 0.96893 0.93537 1.20731 0.91456 1.00852 0.98730 1.20472 0.91843 1.02058 0.91520 1.98361 1.73522 1.84030 1.48287 1.20745 1.00532 0.98580 0.92462 1.20507 0.92681 1.00328 0.91934 1.98373 1.79962 1.77452 1.47892 1.20740 0.91805 0.94149 0.98345 0.92835 0.96014 0.95972 0.92571 0.92574 0.76906 0.87017 0.87775 0.84883 0.84506 0.85138 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.96 13.29 55.43 0.74 -25.22 16 2 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 3 Si 0.90 21.35 29.54 -169.99 -5.02 16.33 16 4 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 5 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 6 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 7 C -0.52 -14.39 9.11 -34.44 -0.31 -14.70 16 8 H 0.06 1.61 7.74 -52.49 -0.41 1.20 16 9 C 0.01 0.32 5.09 -27.89 -0.14 0.18 16 10 C 0.12 2.54 5.61 -4.04 -0.02 2.52 16 11 N -0.72 -11.68 5.56 -60.29 -0.33 -12.02 16 12 C 0.53 7.97 7.47 -10.99 -0.08 7.89 16 13 O -0.53 -9.59 11.70 5.55 0.06 -9.53 16 14 C -0.18 -1.82 6.19 -91.78 -0.57 -2.39 16 15 H 0.13 1.05 8.14 -51.93 -0.42 0.62 16 16 C -0.15 -1.22 9.57 -26.74 -0.26 -1.48 16 17 C -0.09 -0.81 6.04 -91.78 -0.55 -1.37 16 18 H 0.13 0.84 8.14 -51.93 -0.42 0.42 16 19 C -0.02 -0.24 4.37 -104.64 -0.46 -0.69 16 20 C -0.10 -1.13 9.52 -39.54 -0.38 -1.51 16 21 C -0.03 -0.39 6.32 -39.50 -0.25 -0.64 16 22 Cl -0.07 -0.76 28.96 -51.86 -1.50 -2.27 16 23 C -0.10 -1.30 9.62 -39.51 -0.38 -1.68 16 24 C -0.03 -0.37 6.32 -39.50 -0.25 -0.62 16 25 Cl -0.07 -0.86 28.96 -51.86 -1.50 -2.36 16 26 C -0.03 -0.41 5.96 -39.54 -0.24 -0.65 16 27 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 28 H 0.02 0.55 8.14 -51.93 -0.42 0.13 16 29 H 0.02 0.56 8.14 -51.93 -0.42 0.14 16 30 H 0.06 1.21 8.14 -51.92 -0.42 0.79 16 31 H 0.06 1.23 8.14 -51.93 -0.42 0.80 16 32 H 0.40 5.62 8.47 -40.82 -0.35 5.27 16 33 H 0.11 0.65 8.14 -51.93 -0.42 0.23 16 34 H 0.10 0.96 6.18 -51.93 -0.32 0.64 16 35 H 0.13 1.24 8.06 -52.49 -0.42 0.82 16 36 H 0.14 1.51 8.06 -52.49 -0.42 1.09 16 37 H 0.13 1.71 5.78 -52.49 -0.30 1.40 16 LS Contribution 345.54 15.07 5.21 5.21 Total: -1.00 -30.85 345.54 -10.65 -41.50 By element: Atomic # 1 Polarization: 6.23 SS G_CDS: -4.32 Total: 1.92 kcal Atomic # 6 Polarization: -9.58 SS G_CDS: -3.98 Total: -13.57 kcal Atomic # 7 Polarization: -37.64 SS G_CDS: 0.40 Total: -37.23 kcal Atomic # 8 Polarization: -9.59 SS G_CDS: 0.06 Total: -9.53 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -5.02 Total: 16.33 kcal Atomic # 17 Polarization: -1.62 SS G_CDS: -3.00 Total: -4.63 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -30.85 -10.65 -41.50 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273002004.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.174 kcal (2) G-P(sol) polarization free energy of solvation -30.854 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.320 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.650 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.505 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.330 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds