Wall clock time and date at job start Tue Mar 31 2020 15:20:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86802 * 120.00329 * 2 1 4 4 H 1.48499 * 109.47197 * 269.99808 * 3 2 1 5 5 H 1.48504 * 109.47070 * 29.99810 * 3 2 1 6 6 H 1.48503 * 109.47076 * 149.99955 * 3 2 1 7 7 C 1.37880 * 119.99980 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00091 * 179.97438 * 7 2 1 9 9 C 1.50694 * 119.99800 * 0.02562 * 7 2 1 10 10 C 1.53001 * 109.47400 * 179.97438 * 9 7 2 11 11 N 1.46500 * 109.47377 * 179.97438 * 10 9 7 12 12 C 1.34775 * 120.00054 * 180.02562 * 11 10 9 13 13 O 1.21287 * 119.99741 * 359.97438 * 12 11 10 14 14 C 1.50701 * 120.00263 * 179.97438 * 12 11 10 15 15 H 1.09000 * 115.54586 * 34.32711 * 14 12 11 16 16 C 1.52990 * 117.50044 * 248.61827 * 14 12 11 17 17 C 1.52994 * 60.00369 * 252.51158 * 16 14 12 18 18 H 1.09003 * 117.51596 * 252.52560 * 17 16 14 19 19 C 1.50691 * 117.50203 * 107.49032 * 17 16 14 20 20 C 1.38220 * 119.98849 * 171.38249 * 19 17 16 21 21 C 1.38358 * 120.01552 * 180.02562 * 20 19 17 22 22 Cl 1.73603 * 120.01029 * 180.02562 * 21 20 19 23 23 C 1.38335 * 119.98725 * 359.97438 * 21 20 19 24 24 C 1.38332 * 119.96971 * 359.97438 * 23 21 20 25 25 Cl 1.73608 * 120.00233 * 180.02562 * 24 23 21 26 26 C 1.38224 * 119.98609 * 351.35516 * 19 17 16 27 27 H 0.97004 * 119.99581 * 0.02562 * 1 2 3 28 28 H 1.09004 * 109.47648 * 59.99803 * 9 7 2 29 29 H 1.09006 * 109.47191 * 299.99411 * 9 7 2 30 30 H 1.09007 * 109.46807 * 59.99958 * 10 9 7 31 31 H 1.09002 * 109.47323 * 299.99984 * 10 9 7 32 32 H 0.96998 * 120.00384 * 0.02562 * 11 10 9 33 33 H 1.09006 * 117.50413 * 145.01537 * 16 14 12 34 34 H 1.09002 * 117.49957 * 0.02562 * 16 14 12 35 35 H 1.08002 * 119.99585 * 359.97438 * 20 19 17 36 36 H 1.07996 * 120.01281 * 179.73124 * 23 21 20 37 37 H 1.07991 * 119.99407 * 359.97438 * 26 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0464 -1.4001 5 1 1.4467 2.6527 0.7000 6 1 3.5468 1.4400 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4991 0.0005 10 6 2.2451 -3.6621 0.0005 11 7 1.5126 -4.9308 0.0012 12 6 2.1864 -6.0980 0.0018 13 8 3.3992 -6.0980 0.0014 14 6 1.4329 -7.4031 0.0030 15 1 0.4943 -7.4045 -0.5513 16 6 1.5085 -8.2614 1.2672 17 6 2.2550 -8.6935 0.0036 18 1 1.8571 -9.5439 -0.5503 19 6 3.7561 -8.5622 0.0029 20 6 4.4961 -9.0989 -1.0338 21 6 5.8745 -8.9792 -1.0347 22 17 6.8037 -9.6528 -2.3372 23 6 6.5121 -8.3215 0.0020 24 6 5.7708 -7.7836 1.0387 25 17 6.5700 -6.9576 2.3398 26 6 4.3925 -7.9045 1.0388 27 1 -0.4850 0.8401 -0.0004 28 1 0.6246 -2.5571 -0.8897 29 1 0.6240 -2.5567 0.8904 30 1 2.8718 -3.6044 0.8906 31 1 2.8718 -3.6045 -0.8895 32 1 0.5426 -4.9308 0.0011 33 1 0.6195 -8.8276 1.5452 34 1 2.1030 -7.8819 2.0984 35 1 3.9984 -9.6127 -1.8429 36 1 7.5883 -8.2316 0.0039 37 1 3.8138 -7.4845 1.8481 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000273002004.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:20:14 Heat of formation + Delta-G solvation = -23.027746 kcal Electronic energy + Delta-G solvation = -22325.460033 eV Core-core repulsion = 18733.237219 eV Total energy + Delta-G solvation = -3592.222814 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 327.053 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.56168 -39.96473 -37.89233 -37.69433 -36.85824 -36.34271 -34.79532 -32.00876 -31.64955 -31.21880 -27.25828 -25.24621 -24.75976 -23.71076 -22.71056 -21.78128 -20.87258 -18.93124 -18.49066 -17.56500 -16.91516 -16.67954 -16.52988 -16.38411 -16.28989 -15.65904 -15.19392 -15.02806 -14.83364 -14.60133 -14.30753 -13.88669 -13.30045 -13.21828 -13.14914 -12.97857 -12.88487 -12.68964 -12.52193 -12.32819 -12.20663 -11.95842 -11.93733 -11.64576 -11.46250 -11.43387 -11.35968 -10.74857 -10.61532 -9.96478 -9.62286 -9.29782 -8.25705 -6.35896 0.08933 0.13008 0.86408 1.32640 1.40211 1.40251 1.51802 1.60065 2.26392 2.42500 2.49141 3.04454 3.09042 3.46749 3.78931 3.88503 3.91692 3.97043 4.05026 4.23936 4.29142 4.48435 4.50677 4.52363 4.66425 4.85673 4.88884 4.91427 5.04680 5.11100 5.17470 5.32285 5.45202 5.51918 5.58074 5.63696 5.78841 6.15822 6.71597 6.77572 7.33511 7.38258 8.85984 Molecular weight = 327.05amu Principal moments of inertia in cm(-1) A = 0.013202 B = 0.002923 C = 0.002753 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2120.417296 B = 9575.456145 C =10167.696391 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.925 5.925 2 C 0.009 3.991 3 Si 0.962 3.038 4 H -0.272 1.272 5 H -0.278 1.278 6 H -0.268 1.268 7 C -0.547 4.547 8 H 0.055 0.945 9 C 0.024 3.976 10 C 0.146 3.854 11 N -0.715 5.715 12 C 0.521 3.479 13 O -0.564 6.564 14 C -0.182 4.182 15 H 0.159 0.841 16 C -0.131 4.131 17 C -0.085 4.085 18 H 0.162 0.838 19 C -0.027 4.027 20 C -0.100 4.100 21 C -0.040 4.040 22 Cl -0.061 7.061 23 C -0.115 4.115 24 C -0.044 4.044 25 Cl -0.073 7.073 26 C -0.045 4.045 27 H 0.266 0.734 28 H 0.007 0.993 29 H 0.008 0.992 30 H 0.042 0.958 31 H 0.041 0.959 32 H 0.409 0.591 33 H 0.148 0.852 34 H 0.090 0.910 35 H 0.157 0.843 36 H 0.144 0.856 37 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.769 -24.102 0.447 24.573 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.565 5.565 2 C -0.190 4.190 3 Si 0.786 3.214 4 H -0.198 1.198 5 H -0.204 1.204 6 H -0.192 1.192 7 C -0.586 4.586 8 H 0.074 0.926 9 C -0.013 4.013 10 C 0.022 3.978 11 N -0.366 5.366 12 C 0.309 3.691 13 O -0.445 6.445 14 C -0.203 4.203 15 H 0.177 0.823 16 C -0.168 4.168 17 C -0.103 4.103 18 H 0.179 0.821 19 C -0.028 4.028 20 C -0.119 4.119 21 C -0.067 4.067 22 Cl -0.032 7.032 23 C -0.134 4.134 24 C -0.071 4.071 25 Cl -0.045 7.045 26 C -0.064 4.064 27 H 0.075 0.925 28 H 0.026 0.974 29 H 0.027 0.973 30 H 0.060 0.940 31 H 0.059 0.941 32 H 0.245 0.755 33 H 0.166 0.834 34 H 0.108 0.892 35 H 0.175 0.825 36 H 0.162 0.838 37 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 5.637 -23.944 0.450 24.603 hybrid contribution 0.232 1.593 -0.021 1.610 sum 5.869 -22.351 0.428 23.113 Atomic orbital electron populations 1.70047 1.07448 1.27987 1.50981 1.25835 0.95785 1.02966 0.94422 0.85496 0.78656 0.78672 0.78550 1.19754 1.20369 1.19227 1.21463 0.93454 0.92116 1.51549 0.92638 1.19110 0.94197 0.91765 0.96245 1.21103 0.94831 0.82560 0.99301 1.46147 1.11016 1.05476 1.73934 1.20496 0.87679 0.85548 0.75423 1.90739 1.15056 1.87495 1.51164 1.22413 1.02660 0.88055 1.07136 0.82333 1.23318 1.03495 0.99858 0.90097 1.21242 0.87898 0.97586 1.03549 0.82074 1.18970 0.94757 0.96101 0.92925 1.21050 0.91265 1.00458 0.99123 1.20638 0.92457 1.01946 0.91613 1.98361 1.73393 1.83811 1.47681 1.20883 1.01016 0.98885 0.92601 1.20694 0.93144 1.01036 0.92268 1.98360 1.80113 1.77702 1.48281 1.20841 0.91748 0.94817 0.98974 0.92511 0.97421 0.97336 0.93995 0.94106 0.75537 0.83442 0.89183 0.82529 0.83832 0.85786 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.04 13.29 21.45 0.28 -53.76 16 2 C 0.01 0.50 5.46 84.66 0.46 0.96 16 3 Si 0.96 43.78 29.54 68.60 2.03 45.80 16 4 H -0.27 -12.01 7.11 99.48 0.71 -11.31 16 5 H -0.28 -12.27 7.11 99.48 0.71 -11.56 16 6 H -0.27 -11.90 7.11 99.48 0.71 -11.19 16 7 C -0.55 -30.69 9.11 25.60 0.23 -30.45 16 8 H 0.06 3.07 7.74 -2.91 -0.02 3.05 16 9 C 0.02 1.21 5.09 29.85 0.15 1.37 16 10 C 0.15 6.18 5.61 86.38 0.48 6.66 16 11 N -0.72 -23.16 5.56 -463.04 -2.57 -25.74 16 12 C 0.52 15.29 7.47 87.66 0.65 15.94 16 13 O -0.56 -20.29 11.70 -3.05 -0.04 -20.32 16 14 C -0.18 -3.22 6.19 -11.54 -0.07 -3.29 16 15 H 0.16 1.90 8.14 -2.39 -0.02 1.88 16 16 C -0.13 -1.75 9.57 30.59 0.29 -1.46 16 17 C -0.08 -1.28 6.04 -11.54 -0.07 -1.35 16 18 H 0.16 1.32 8.14 -2.39 -0.02 1.30 16 19 C -0.03 -0.59 4.37 -19.87 -0.09 -0.67 16 20 C -0.10 -2.10 9.52 22.29 0.21 -1.89 16 21 C -0.04 -0.91 6.32 22.32 0.14 -0.77 16 22 Cl -0.06 -1.25 28.96 -2.72 -0.08 -1.33 16 23 C -0.11 -2.86 9.62 22.32 0.21 -2.64 16 24 C -0.04 -1.21 6.32 22.32 0.14 -1.07 16 25 Cl -0.07 -1.98 28.96 -2.72 -0.08 -2.05 16 26 C -0.04 -1.17 5.96 22.30 0.13 -1.04 16 27 H 0.27 14.59 8.31 -92.71 -0.77 13.82 16 28 H 0.01 0.39 8.14 -2.39 -0.02 0.37 16 29 H 0.01 0.43 8.14 -2.38 -0.02 0.42 16 30 H 0.04 1.87 8.14 -2.38 -0.02 1.85 16 31 H 0.04 1.83 8.14 -2.39 -0.02 1.81 16 32 H 0.41 11.25 8.47 -92.71 -0.79 10.47 16 33 H 0.15 0.98 8.14 -2.38 -0.02 0.96 16 34 H 0.09 1.51 6.18 -2.39 -0.01 1.50 16 35 H 0.16 2.44 8.06 -2.91 -0.02 2.42 16 36 H 0.14 3.21 8.06 -2.91 -0.02 3.19 16 37 H 0.12 3.29 5.78 -2.92 -0.02 3.28 16 Total: -1.00 -67.63 345.54 2.77 -64.86 By element: Atomic # 1 Polarization: 11.91 SS G_CDS: 0.33 Total: 12.24 kcal Atomic # 6 Polarization: -22.60 SS G_CDS: 2.89 Total: -19.71 kcal Atomic # 7 Polarization: -77.21 SS G_CDS: -2.29 Total: -79.49 kcal Atomic # 8 Polarization: -20.29 SS G_CDS: -0.04 Total: -20.32 kcal Atomic # 14 Polarization: 43.78 SS G_CDS: 2.03 Total: 45.80 kcal Atomic # 17 Polarization: -3.22 SS G_CDS: -0.16 Total: -3.38 kcal Total: -67.63 2.77 -64.86 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273002004.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.833 kcal (2) G-P(sol) polarization free energy of solvation -67.628 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.795 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.767 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.861 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.028 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds