Wall clock time and date at job start Tue Mar 31 2020 15:20:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86798 * 119.99722 * 2 1 4 4 H 1.48506 * 109.47297 * 239.99731 * 3 2 1 5 5 H 1.48503 * 109.47261 * 119.99912 * 3 2 1 6 6 H 1.48500 * 109.47454 * 359.97438 * 3 2 1 7 7 C 1.37880 * 120.00327 * 179.97438 * 2 1 3 8 8 H 1.07995 * 119.99932 * 180.02562 * 7 2 1 9 9 C 1.50695 * 119.99572 * 0.02562 * 7 2 1 10 10 C 1.53005 * 109.47088 * 180.02562 * 9 7 2 11 11 N 1.46499 * 109.47232 * 179.97438 * 10 9 7 12 12 C 1.34779 * 119.99872 * 179.97438 * 11 10 9 13 13 O 1.21278 * 120.00071 * 359.97438 * 12 11 10 14 14 C 1.50703 * 119.99944 * 180.02562 * 12 11 10 15 15 H 1.09000 * 115.54753 * 325.72485 * 14 12 11 16 16 C 1.52997 * 117.49937 * 111.39164 * 14 12 11 17 17 C 1.52997 * 117.49819 * 180.02562 * 14 12 11 18 18 H 1.09005 * 117.49966 * 0.02562 * 17 14 12 19 19 C 1.50701 * 117.49867 * 145.02096 * 17 14 12 20 20 C 1.38223 * 119.98569 * 59.72376 * 19 17 14 21 21 C 1.38363 * 120.01062 * 179.72758 * 20 19 17 22 22 Cl 1.73596 * 120.00573 * 180.27391 * 21 20 19 23 23 C 1.38331 * 119.98133 * 0.56943 * 21 20 19 24 24 C 1.38332 * 119.97899 * 359.70682 * 23 21 20 25 25 Cl 1.73596 * 120.00545 * 180.02562 * 24 23 21 26 26 C 1.38221 * 119.98319 * 240.00299 * 19 17 14 27 27 H 0.97006 * 119.99995 * 179.97438 * 1 2 3 28 28 H 1.09002 * 109.47261 * 300.00001 * 9 7 2 29 29 H 1.08998 * 109.47789 * 59.99853 * 9 7 2 30 30 H 1.09002 * 109.46935 * 300.00034 * 10 9 7 31 31 H 1.09001 * 109.46812 * 59.99693 * 10 9 7 32 32 H 0.97000 * 119.99832 * 0.02562 * 11 10 9 33 33 H 1.09004 * 117.50108 * 214.97919 * 16 14 12 34 34 H 1.09001 * 117.49797 * 359.97438 * 16 14 12 35 35 H 1.07994 * 119.99262 * 0.02562 * 20 19 17 36 36 H 1.08014 * 120.00623 * 179.68247 * 23 21 20 37 37 H 1.07993 * 119.99781 * 359.97438 * 26 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.1029 1.6965 -1.2125 5 1 3.1028 1.6965 1.2125 6 1 1.2840 2.7465 -0.0006 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 6 2.2453 -3.6620 0.0018 11 7 1.5129 -4.9308 0.0024 12 6 2.1868 -6.0980 0.0031 13 8 3.3996 -6.0979 0.0027 14 6 1.4333 -7.4031 0.0031 15 1 0.4942 -7.4037 0.5566 16 6 1.5093 -8.2628 -1.2602 17 6 2.2554 -8.6934 0.0045 18 1 3.3413 -8.5984 0.0057 19 6 1.7050 -9.8684 0.7709 20 6 0.4730 -10.3970 0.4341 21 6 -0.0303 -11.4794 1.1338 22 17 -1.5743 -12.1477 0.7061 23 6 0.6944 -12.0249 2.1782 24 6 1.9246 -11.4918 2.5186 25 17 2.8349 -12.1762 3.8287 26 6 2.4297 -10.4133 1.8142 27 1 -0.4850 -0.8401 -0.0004 28 1 0.6241 -2.5566 0.8903 29 1 0.6247 -2.5571 -0.8896 30 1 2.8727 -3.6047 -0.8877 31 1 2.8713 -3.6038 0.8923 32 1 0.5428 -4.9307 0.0016 33 1 0.6204 -8.8294 -1.5377 34 1 2.1040 -7.8842 -2.0916 35 1 -0.0945 -9.9682 -0.3785 36 1 0.2995 -12.8666 2.7281 37 1 3.3903 -9.9973 2.0796 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000273002006.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:20:18 Heat of formation + Delta-G solvation = -22.034353 kcal Electronic energy + Delta-G solvation = -21339.327185 eV Core-core repulsion = 17747.147448 eV Total energy + Delta-G solvation = -3592.179737 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 327.053 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.57196 -39.40361 -37.24638 -37.18752 -36.20261 -35.01395 -33.11968 -31.36055 -31.03141 -29.52719 -25.43086 -24.48686 -23.54538 -23.00254 -21.38187 -20.97633 -19.93093 -18.07261 -17.31498 -16.64377 -16.16916 -16.09578 -15.55266 -15.22783 -14.84409 -14.57405 -14.41555 -14.04504 -13.74043 -13.28732 -12.82487 -12.77895 -12.50374 -12.46471 -12.22664 -12.12411 -11.81277 -11.68145 -11.42145 -11.39303 -11.03384 -10.83760 -10.76249 -10.47555 -10.22191 -10.02340 -9.72902 -9.20495 -9.14093 -8.71733 -8.64707 -8.40866 -6.47365 -4.17691 0.50429 0.52555 1.35792 1.81656 2.56116 2.90500 3.38830 3.42475 3.43689 3.61309 3.71262 4.05467 4.40697 4.42661 4.48126 4.49617 4.54943 4.67036 4.74445 4.94120 5.06013 5.16154 5.30817 5.33961 5.55596 5.58216 5.65136 5.70833 5.98758 6.04744 6.12768 6.16138 6.54260 6.72383 7.19088 7.29677 7.84309 8.04337 8.34264 8.48452 8.76222 9.54278 10.93699 Molecular weight = 327.05amu Principal moments of inertia in cm(-1) A = 0.017922 B = 0.002045 C = 0.001940 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1561.956881 B =13685.322163 C =14430.134229 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.909 5.909 2 C 0.017 3.983 3 Si 1.071 2.929 4 H -0.287 1.287 5 H -0.286 1.286 6 H -0.282 1.282 7 C -0.603 4.603 8 H 0.053 0.947 9 C 0.000 4.000 10 C 0.129 3.871 11 N -0.718 5.718 12 C 0.534 3.466 13 O -0.548 6.548 14 C -0.171 4.171 15 H 0.126 0.874 16 C -0.142 4.142 17 C -0.091 4.091 18 H 0.135 0.865 19 C -0.021 4.021 20 C -0.108 4.108 21 C -0.020 4.020 22 Cl -0.057 7.057 23 C -0.109 4.109 24 C -0.020 4.020 25 Cl -0.056 7.056 26 C -0.095 4.095 27 H 0.268 0.732 28 H 0.013 0.987 29 H 0.014 0.986 30 H 0.058 0.942 31 H 0.059 0.941 32 H 0.398 0.602 33 H 0.108 0.892 34 H 0.109 0.891 35 H 0.143 0.857 36 H 0.144 0.856 37 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.044 -27.967 2.189 28.072 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.545 5.545 2 C -0.187 4.187 3 Si 0.899 3.101 4 H -0.213 1.213 5 H -0.213 1.213 6 H -0.207 1.207 7 C -0.642 4.642 8 H 0.071 0.929 9 C -0.038 4.038 10 C 0.007 3.993 11 N -0.367 5.367 12 C 0.320 3.680 13 O -0.427 6.427 14 C -0.192 4.192 15 H 0.144 0.856 16 C -0.179 4.179 17 C -0.109 4.109 18 H 0.152 0.848 19 C -0.022 4.022 20 C -0.126 4.126 21 C -0.047 4.047 22 Cl -0.028 7.028 23 C -0.128 4.128 24 C -0.047 4.047 25 Cl -0.027 7.027 26 C -0.114 4.114 27 H 0.078 0.922 28 H 0.032 0.968 29 H 0.032 0.968 30 H 0.077 0.923 31 H 0.077 0.923 32 H 0.232 0.768 33 H 0.126 0.874 34 H 0.128 0.872 35 H 0.161 0.839 36 H 0.162 0.838 37 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -0.421 -26.397 2.275 26.498 hybrid contribution -0.437 -1.809 0.200 1.871 sum -0.858 -28.206 2.476 28.327 Atomic orbital electron populations 1.70808 1.06885 1.30550 1.46271 1.25893 0.96488 1.02842 0.93450 0.83509 0.74878 0.75046 0.76701 1.21295 1.21289 1.20698 1.21878 0.94537 0.91367 1.56415 0.92865 1.19452 0.94846 0.92889 0.96594 1.21593 0.95728 0.80939 1.01079 1.46263 1.10556 1.06391 1.73474 1.19493 0.87522 0.84443 0.76586 1.90680 1.13799 1.87593 1.50583 1.22434 1.01849 0.90297 1.04638 0.85640 1.23167 1.02741 1.00781 0.91188 1.21046 0.99893 0.90636 0.99363 0.84768 1.18996 0.93124 0.95297 0.94775 1.21095 0.95909 0.95252 1.00376 1.20671 0.89138 0.97064 0.97796 1.98398 1.27103 1.84790 1.92520 1.20894 0.93310 1.01335 0.97303 1.20698 0.93644 0.97003 0.93341 1.98399 1.73567 1.84072 1.46683 1.21040 1.01236 0.94607 0.94524 0.92164 0.96829 0.96812 0.92312 0.92309 0.76839 0.87352 0.87222 0.83920 0.83838 0.83839 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -27.10 13.65 55.43 0.76 -26.35 16 2 C 0.02 0.49 5.46 -17.82 -0.10 0.40 16 3 Si 1.07 24.85 29.90 -169.99 -5.08 19.77 16 4 H -0.29 -6.35 7.11 56.52 0.40 -5.95 16 5 H -0.29 -6.36 7.11 56.52 0.40 -5.96 16 6 H -0.28 -6.53 7.11 56.52 0.40 -6.12 16 7 C -0.60 -16.82 9.11 -34.44 -0.31 -17.13 16 8 H 0.05 1.47 7.74 -52.49 -0.41 1.06 16 9 C 0.00 -0.01 4.40 -27.88 -0.12 -0.13 16 10 C 0.13 2.70 5.61 -4.04 -0.02 2.68 16 11 N -0.72 -11.97 5.56 -60.29 -0.33 -12.31 16 12 C 0.53 8.47 7.61 -10.98 -0.08 8.39 16 13 O -0.55 -10.69 16.26 5.56 0.09 -10.60 16 14 C -0.17 -1.87 5.82 -91.77 -0.53 -2.41 16 15 H 0.13 1.16 8.14 -51.93 -0.42 0.74 16 16 C -0.14 -1.24 9.56 -26.72 -0.26 -1.50 16 17 C -0.09 -0.89 5.55 -91.76 -0.51 -1.40 16 18 H 0.13 1.47 7.67 -51.93 -0.40 1.08 16 19 C -0.02 -0.19 5.61 -104.63 -0.59 -0.77 16 20 C -0.11 -0.86 9.08 -39.54 -0.36 -1.22 16 21 C -0.02 -0.16 6.32 -39.50 -0.25 -0.41 16 22 Cl -0.06 -0.44 28.96 -51.86 -1.50 -1.94 16 23 C -0.11 -0.86 9.61 -39.51 -0.38 -1.24 16 24 C -0.02 -0.17 6.32 -39.50 -0.25 -0.42 16 25 Cl -0.06 -0.46 28.96 -51.86 -1.50 -1.96 16 26 C -0.10 -0.84 9.52 -39.54 -0.38 -1.22 16 27 H 0.27 7.86 7.22 -40.82 -0.29 7.56 16 28 H 0.01 0.34 8.01 -51.93 -0.42 -0.08 16 29 H 0.01 0.34 8.01 -51.93 -0.42 -0.08 16 30 H 0.06 1.29 8.14 -51.93 -0.42 0.86 16 31 H 0.06 1.30 8.14 -51.93 -0.42 0.87 16 32 H 0.40 5.65 8.47 -40.82 -0.35 5.31 16 33 H 0.11 0.69 6.18 -51.93 -0.32 0.37 16 34 H 0.11 1.03 8.14 -51.93 -0.42 0.61 16 35 H 0.14 0.93 6.02 -52.49 -0.32 0.62 16 36 H 0.14 0.93 8.06 -52.48 -0.42 0.51 16 37 H 0.14 1.18 8.06 -52.49 -0.42 0.75 16 LS Contribution 352.20 15.07 5.31 5.31 Total: -1.00 -31.66 352.20 -10.65 -42.31 By element: Atomic # 1 Polarization: 6.40 SS G_CDS: -4.25 Total: 2.15 kcal Atomic # 6 Polarization: -12.24 SS G_CDS: -4.14 Total: -16.38 kcal Atomic # 7 Polarization: -39.08 SS G_CDS: 0.42 Total: -38.66 kcal Atomic # 8 Polarization: -10.69 SS G_CDS: 0.09 Total: -10.60 kcal Atomic # 14 Polarization: 24.85 SS G_CDS: -5.08 Total: 19.77 kcal Atomic # 17 Polarization: -0.90 SS G_CDS: -3.00 Total: -3.90 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -31.66 -10.65 -42.31 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273002006.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.277 kcal (2) G-P(sol) polarization free energy of solvation -31.658 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.381 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.654 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.311 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.034 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds